CN181984
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ESCF3 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=caiC PE=3 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15 Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2 Query: 131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571 E+C++ + + + Y+ N + TAR ++ +GWLHT +IK G V+ ELE I+ HP ++D VV + D E A VV+N SE++ +F N+A +K L +P++ SGKI+R+ LK Sbjct: 368 EICIKGVPGKTIFKEYFLNPQATARVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGEILSEEEFFNFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKALK 517
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECO27 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=caiC PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15 Identity = 46/150 (30.67%), Postives = 75/150 (50.00%), Query Frame = -2 Query: 131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571 E+C++ + + + Y+ N + TA+ ++ +GWLHT +IK G V+ ELE I+ THP ++D VV + D E A VV+N SE++ F N+A +K + L +P++ SGKI+R+ LK Sbjct: 368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVLSYLEIRKDLPRNCSGKIIRKNLK 517
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_PROMH (Probable crotonobetaine/carnitine-CoA ligase OS=Proteus mirabilis (strain HI4320) GN=caiC PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15 Identity = 43/150 (28.67%), Postives = 76/150 (50.67%), Query Frame = -2 Query: 131 ELCVRSQ---CVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571 E+CV+ + + + YYN + T + ++ +GWLHT +IK G V+ E+E I+ +HP ++D AV+ +PD+ E A VV+ SE+ F N+A +K + F G+P++ SGK++++ L+ Sbjct: 369 EICVKGEPGKTLFKEYYNRPDATEKALEPDGWLHTGDYGYQDDEGFFYFVDRSCNMIKRGGENVSCIEIENIIASHPKIQDVAVIGVPDDIRDEAIKAFVVLVDGETLSEEAFFAFCEQNMAKFKVPSAVEFKQGLPRNCSGKVIKKHLQ 518
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_SHISS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella sonnei (strain Ss046) GN=caiC PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15 Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2 Query: 131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571 E+C++ + + + Y+ N + TA+ ++ +GWLHT +IK G V+ ELE I+ THP ++D VV + D E A VV+N SE++ F N+A +K L +P++ SGKI+R+ LK Sbjct: 368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_SHIFL (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella flexneri GN=caiC PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15 Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2 Query: 131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571 E+C++ + + + Y+ N + TA+ ++ +GWLHT +IK G V+ ELE I+ THP ++D VV + D E A VV+N SE++ F N+A +K L +P++ SGKI+R+ LK Sbjct: 368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSM (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiC PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15 Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2 Query: 131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571 E+C++ + + + Y+ N + TA+ ++ +GWLHT +IK G V+ ELE I+ THP ++D VV + D E A VV+N SE++ F N+A +K L +P++ SGKI+R+ LK Sbjct: 368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSE (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SE11) GN=caiC PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15 Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2 Query: 131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571 E+C++ + + + Y+ N + TA+ ++ +GWLHT +IK G V+ ELE I+ THP ++D VV + D E A VV+N SE++ F N+A +K L +P++ SGKI+R+ LK Sbjct: 368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECOHS (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O9:H4 (strain HS) GN=caiC PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15 Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2 Query: 131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571 E+C++ + + + Y+ N + TA+ ++ +GWLHT +IK G V+ ELE I+ THP ++D VV + D E A VV+N SE++ F N+A +K L +P++ SGKI+R+ LK Sbjct: 368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECO5E (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=caiC PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15 Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2 Query: 131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571 E+C++ + + + Y+ N + TA+ ++ +GWLHT +IK G V+ ELE I+ THP ++D VV + D E A VV+N SE++ F N+A +K L +P++ SGKI+R+ LK Sbjct: 368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECO57 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O157:H7 GN=caiC PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15 Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2 Query: 131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571 E+C++ + + + Y+ N + TA+ ++ +GWLHT +IK G V+ ELE I+ THP ++D VV + D E A VV+N SE++ F N+A +K L +P++ SGKI+R+ LK Sbjct: 368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517 The following BLAST results are available for this feature:
BLAST of CN181984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 164
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181984 ID=CN181984; Name=CN181984; organism=Citrus sinensis; type=EST; length=572bpback to top |