CN181984

Overview
NameCN181984
Unique NameCN181984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ESCF3 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=caiC PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TAR ++ +GWLHT                    +IK  G  V+  ELE I+  HP ++D  VV + D    E   A VV+N     SE++  +F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPQATARVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGEILSEEEFFNFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKALK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECO27 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 46/150 (30.67%), Postives = 75/150 (50.00%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K +  L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVLSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_PROMH (Probable crotonobetaine/carnitine-CoA ligase OS=Proteus mirabilis (strain HI4320) GN=caiC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 43/150 (28.67%), Postives = 76/150 (50.67%), Query Frame = -2
Query:  131 ELCVRSQ---CVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+CV+ +    + + YYN  + T + ++ +GWLHT                    +IK  G  V+  E+E I+ +HP ++D AV+ +PD+   E   A VV+      SE+    F   N+A +K    + F  G+P++ SGK++++ L+
Sbjct:  369 EICVKGEPGKTLFKEYYNRPDATEKALEPDGWLHTGDYGYQDDEGFFYFVDRSCNMIKRGGENVSCIEIENIIASHPKIQDVAVIGVPDDIRDEAIKAFVVLVDGETLSEEAFFAFCEQNMAKFKVPSAVEFKQGLPRNCSGKVIKKHLQ 518          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_SHISS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella sonnei (strain Ss046) GN=caiC PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_SHIFL (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella flexneri GN=caiC PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSM (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSE (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SE11) GN=caiC PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECOHS (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O9:H4 (strain HS) GN=caiC PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECO5E (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECO57 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O157:H7 GN=caiC PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
The following BLAST results are available for this feature:
BLAST of CN181984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
CAIC_ESCF32.921e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO272.921e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_PROMH3.816e-1528.67Probable crotonobetaine/carnitine-CoA ligase OS=Pr... [more]
CAIC_SHISS4.983e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_SHIFL4.983e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_ECOSM4.983e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOSE4.983e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOHS4.983e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO5E4.983e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO574.983e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181984 ID=CN181984; Name=CN181984; organism=Citrus sinensis; type=EST; length=572bp
TATCGAAGGACACAAAGTTAACACATAGAGCGATGAATGTTAAGCATCCA
ACAACAAGTGATCAAAGGGGAGAAAATTAATAAGCCGGCTGCGTCAGATT
TCACTTTCGCATCTTCTCAAGCATCTTGTCTTTGAGAATCCTTCTCATTA
TTTTCCCAGAGTGAGACTTTGGGATGCCATCCACAAAGTGCAAGACTCTC
ACTTTCTTATAAGTTGCAACGTTGGAGGCCACGAAGTCCATAATATCATC
TTCACTTTCTTTGGCATTTGGGTTCATCACGACACAGGCGGCTGGGATTT
CCCCCGCCTCTTCATCAGGCAGCGACACAACCGCAGCATCTTCAACCGAG
GGATGAGTTAAAAGGATGGCTTCAAGCTCAGCCGGGGCTACTTGAAACCC
CTTGTACTTGATTAACTCTTTGATGCGATCAACAATAAAAATATCTCCGT
CATCATCTATGTATCCAATGTCACCGGTATGTAGCCACCCATTCTTGTCA
ATGGTCCTTGCAGTTTCCTCTTCATTGTTATAGTAACCTTGCATTACACA
TTGACTTCTGACGCAAAGCTCA
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