CN181984

Overview
NameCN181984
Unique NameCN181984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECO55 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain 55989 / EAEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECO24 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: LCFA_YERPE (Long-chain-fatty-acid--CoA ligase OS=Yersinia pestis GN=fadD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 48/149 (32.21%), Postives = 78/149 (52.35%), Query Frame = -2
Query:  125 ELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 571
            EL VR   VM GY+   + T   + K+GWL T                  K++I   GF V P E+E ++  H  V ++AV+ +P+E +GE     VV N +A  + ++++      +  YK  +++ F D +PKS+ GKI+RR L+D+
Sbjct:  406 ELWVRGPQVMLGYWQRPDATDDVL-KDGWLATGDIATMDEDGFLRIVDRKKDMILVSGFNVYPNEIEEVVALHAKVLESAVIGVPNEVSGEAVKVFVVKN-DASLTPEELLTHCRRYLTGYKVPKIVEFRDELPKSNVGKILRRELRDE 552          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_SALAR (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=caiC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 42/150 (28.00%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+   + TA+ ++ NGWLHT                    ++K  G  V+  ELE I+  HP ++D  V+ + D+   E   A VV+N     +E+D   F   N+A +K    L   + +P++ SGKI+++ LK
Sbjct:  368 EICIKGIPGKTLFKSYFERPDATAKALEPNGWLHTGDSGYRDEEGFFYFVDRRCNMVKRGGENVSCVELENIIAGHPKIQDVVVIGIKDDIRDEAIKAFVVLNEGETLTEEDFFTFCEENMAKFKVPSYLEIREDLPRNCSGKIIKKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECOUT (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain UTI89 / UPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECOL6 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O6 GN=caiC PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECOL5 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECOK1 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O1:K1 / APEC GN=caiC PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECO8A (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O8 (strain IAI1) GN=caiC PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVVNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CN181984 vs. ExPASy Swiss-Prot
Match: CAIC_ECO81 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O81 (strain ED1a) GN=caiC PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  131 ELCVRS---QCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 571
            E+C++    + + + Y+ N + TA+ ++ +GWLHT                    +IK  G  V+  ELE I+ THP ++D  VV + D    E   A VV+N     SE++   F   N+A +K    L     +P++ SGKI+R+ LK
Sbjct:  368 EICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
The following BLAST results are available for this feature:
BLAST of CN181984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
CAIC_ECO554.983e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO244.983e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
LCFA_YERPE6.508e-1532.21Long-chain-fatty-acid--CoA ligase OS=Yersinia pest... [more]
CAIC_SALAR6.508e-1528.00Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_ECOUT6.508e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOL66.508e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOL56.508e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOK16.508e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO8A6.508e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO816.508e-1530.67Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181984 ID=CN181984; Name=CN181984; organism=Citrus sinensis; type=EST; length=572bp
TATCGAAGGACACAAAGTTAACACATAGAGCGATGAATGTTAAGCATCCA
ACAACAAGTGATCAAAGGGGAGAAAATTAATAAGCCGGCTGCGTCAGATT
TCACTTTCGCATCTTCTCAAGCATCTTGTCTTTGAGAATCCTTCTCATTA
TTTTCCCAGAGTGAGACTTTGGGATGCCATCCACAAAGTGCAAGACTCTC
ACTTTCTTATAAGTTGCAACGTTGGAGGCCACGAAGTCCATAATATCATC
TTCACTTTCTTTGGCATTTGGGTTCATCACGACACAGGCGGCTGGGATTT
CCCCCGCCTCTTCATCAGGCAGCGACACAACCGCAGCATCTTCAACCGAG
GGATGAGTTAAAAGGATGGCTTCAAGCTCAGCCGGGGCTACTTGAAACCC
CTTGTACTTGATTAACTCTTTGATGCGATCAACAATAAAAATATCTCCGT
CATCATCTATGTATCCAATGTCACCGGTATGTAGCCACCCATTCTTGTCA
ATGGTCCTTGCAGTTTCCTCTTCATTGTTATAGTAACCTTGCATTACACA
TTGACTTCTGACGCAAAGCTCA
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