CN188827

Overview
NameCN188827
Unique NameCN188827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_VIBVU (3-isopropylmalate dehydrogenase OS=Vibrio vulnificus GN=leuB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.276e-11
Identity = 68/222 (30.63%), Postives = 102/222 (45.95%), Query Frame = 1
Query:  154 LFPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYV-GTEID----PRTQSFLT-WESLESVRRNKV-GLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCY---SLPGYKTRYDDV-----NLITIRENTEGEY----SGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN 750
            + PGDGIGPE+     +V    E    +  E EEH V G  ID    P  QS +T  E  ++V    V G K     P  +  R   L LRK   L+ N+RP      L  +     D+     +++ +RE T G Y     G E +         +I  R    R+A+ AF  A+   R++V +I KAN++Q +  L+ +   E+A+ YP++    + IDN
Sbjct:   10 VLPGDGIGPEVMAQAHKVLDAIEKKHAIHFEREEHDVGGIAIDNHGCPLPQSTVTACEESDAVLFGSVGGPKWEHLPPNDQPERGALLPLRKHFQLFCNLRPAQIHSGLEAFSPLRADISGRGFDIVVVRELTGGIYFGQPKGREGEGANEKAYDTEIYHRFEIERIAKIAFESARLR-RKKVCSIDKANVLQSSI-LWREVVEELAKDYPDVELSHMYIDN 229          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_VIBPA (3-isopropylmalate dehydrogenase OS=Vibrio parahaemolyticus GN=leuB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.276e-11
Identity = 66/222 (29.73%), Postives = 102/222 (45.95%), Query Frame = 1
Query:  154 LFPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYV-GTEID----PRTQSFLT-WESLESVRRNKV-GLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCY---SLPGYKTRYDDV-----NLITIRENTEGEY----SGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN 750
            + PGDGIGPE+     +V    E    +  E EEH V G  ID    P  +S +T  E  ++V    V G K     P  +  R   L LRK   L+ N+RP      L  +     D+     +++ +RE T G Y     G E +         ++  R    R+A+ AF  A+   R++V +I KAN++Q +  L+ +   E+A+ YP++    + IDN
Sbjct:   10 VLPGDGIGPEVMAQAHKVLDAIEQKHGISFEREEHDVGGIAIDNHGCPLPESTVTACEESDAVLFGSVGGPKWEHLPPNDQPERGALLPLRKHFQLFCNLRPAQIHAGLEAFSPLRADISGRGFDIVVVRELTGGIYFGQPKGREGEGANEKAFDTEVYHRYEIERIAKIAFESARLR-RKKVCSIDKANVLQSSI-LWREVVEEIAKDYPDVELSHMYIDN 229          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_THEMA (3-isopropylmalate dehydrogenase OS=Thermotoga maritima GN=leuB PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.276e-11
Identity = 64/218 (29.36%), Postives = 95/218 (43.58%), Query Frame = 1
Query:  154 LFPGDGIGPEIAESVKQVFRTAEVPV--EWEE---HYVGTEID------PRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC--------YSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN 750
            + PGDGIGPE+     +V    E      +E+   H  G  ID      P     +  E+      +  G K     P  +      L LRK LNLYAN+RP          S    K     V+L+T+RE + G Y G    +         I  R+   R+A  AF  AK   R++V+++ KAN++  +  L+ K   EVA +YP++    + +DN
Sbjct:    5 VLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWDDLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTMIYDRKTVERIARTAFEIAKNR-RKKVTSVDKANVLY-SSMLWRKVVNEVAREYPDVELTHIYVDN 220          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_MYCSS (3-isopropylmalate dehydrogenase OS=Mycobacterium sp. (strain MCS) GN=leuB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.276e-11
Identity = 59/207 (28.50%), Postives = 95/207 (45.89%), Query Frame = 1
Query:  154 LFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNK---VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC--YS-LPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRG----VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYP--EITYEEV 738
            +  GDGIGPE+     +V       VE   + +G      T   L    LE ++ +    +G  G  + P G   R L L +R  L+ + N+RP   YS + G      +++ + +RE TEG Y+G    +  G    V   + + T     RV E AF  A+   R+ ++ +HK N++     L+ +  +EV  +YP  EI Y+ V
Sbjct:    5 IIAGDGIGPEVIGEAVKVLDAVLPEVEKTTYDLGARRYHATGEILPDSVLEELKVHDAILLGAIGDPSVPSGVLERGLLLRIRFALDHHINLRPAKLYSGVTGPLAGNPEIDFVVVREGTEGPYTGTGGAIRVGTPHEVATEVSLNTAFGVRRVVEDAFRRAQQR-RKHLTLVHKNNVLTFAGALWWRTVQEVGAEYPDVEIAYQHV 210          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_MYCSK (3-isopropylmalate dehydrogenase OS=Mycobacterium sp. (strain KMS) GN=leuB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.276e-11
Identity = 59/207 (28.50%), Postives = 95/207 (45.89%), Query Frame = 1
Query:  154 LFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNK---VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC--YS-LPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRG----VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYP--EITYEEV 738
            +  GDGIGPE+     +V       VE   + +G      T   L    LE ++ +    +G  G  + P G   R L L +R  L+ + N+RP   YS + G      +++ + +RE TEG Y+G    +  G    V   + + T     RV E AF  A+   R+ ++ +HK N++     L+ +  +EV  +YP  EI Y+ V
Sbjct:    5 IIAGDGIGPEVIGEAVKVLDAVLPEVEKTTYDLGARRYHATGEILPDSVLEELKVHDAILLGAIGDPSVPSGVLERGLLLRIRFALDHHINLRPAKLYSGVTGPLAGNPEIDFVVVREGTEGPYTGTGGAIRVGTPHEVATEVSLNTAFGVRRVVEDAFRRAQQR-RKHLTLVHKNNVLTFAGALWWRTVQEVGAEYPDVEIAYQHV 210          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_MYCSJ (3-isopropylmalate dehydrogenase OS=Mycobacterium sp. (strain JLS) GN=leuB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.276e-11
Identity = 59/207 (28.50%), Postives = 95/207 (45.89%), Query Frame = 1
Query:  154 LFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNK---VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC--YS-LPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRG----VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYP--EITYEEV 738
            +  GDGIGPE+     +V       VE   + +G      T   L    LE ++ +    +G  G  + P G   R L L +R  L+ + N+RP   YS + G      +++ + +RE TEG Y+G    +  G    V   + + T     RV E AF  A+   R+ ++ +HK N++     L+ +  +EV  +YP  EI Y+ V
Sbjct:    5 IIAGDGIGPEVIGEAVKVLDAVLPEVEKTTYDLGARRYHATGEILPDSVLEELKVHDAILLGAIGDPSVPSGVLERGLLLRIRFALDHHINLRPAKLYSGVTGPLAGNPEIDFVVVREGTEGPYTGTGGAIRVGTPHEVATEVSLNTAFGVRRVVEDAFRRAQQR-RKHLTLVHKNNVLTFAGALWWRTVQEVGAEYPDVEIAYQHV 210          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_BACHD (3-isopropylmalate dehydrogenase OS=Bacillus halodurans GN=leuB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.276e-11
Identity = 65/221 (29.41%), Postives = 109/221 (49.32%), Query Frame = 1
Query:  154 LFPGDGIGPEIAESVKQVFRTAEV----PVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK---GHRSLN---LTLRKELNLYANVRPCY---SLPGYKTRYDDV----NLITIRENTEGEYSGLEHQVVRGVVESLKII-----TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN 750
            + PGDGIGPE+ ++  +V +           +++  +G        + L  E+L+  R     L G +  P      GH       L LRK LNL+AN+RP     SL    T  +DV    +L+ +RE T G Y G E +  RG  E+ +++     TR    R+   AF  A    +  V+++ KAN+++ +  ++ +   EVA+++PE+T E +++DN
Sbjct:    7 VLPGDGIGPEVTDAAIEVLQAVADRFGHTFSYKKALLGGCAIDEVGTPLPEETLDVCRHADGILLGAVGGPKWDTLPGHLRPEKGLLGLRKGLNLFANLRPVTVYDSLADASTLKNDVIDGVDLLIVRELTGGLYFG-EPRERRGEGETEEVVDTLLYTRGEMRRIIRKAFELAMVRNKH-VTSVDKANVLESSR-MWREVANEVAQEFPEVTLEHMLVDN 224          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_STAAS (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=leuB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.279e-11
Identity = 60/213 (28.17%), Postives = 99/213 (46.48%), Query Frame = 1
Query:  160 PGDGIGPEIAES----VKQVFRTAEVPVEWEEH-YVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMA-----TPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT-------RYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            PGDGIGPEI       ++ +        + E H + G  ID   +  LT ++L + +R    L G +       P  +  + L L LRK LNL+AN+RP   + G  +       R +  +L+ +RE T G Y G                TR+   R+   AF  A +  R +++++ K N++  +  L+ K   EV++ YPE+T   +++D
Sbjct:    9 PGDGIGPEILNGSLSLLEIISNKYNFNYQIEHHEFGGASIDTFGEP-LTEKTLNACKRADAILLGAIGGPKWTDPNNRPEQGL-LKLRKSLNLFANIRPTTVVKGASSLSPLKEERVEGTDLVIVRELTSGIYFGEPRHFNNHEALDSLTYTREEIERIVHVAFKLAASR-RGKLTSVDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVD 217          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_STAAN (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain N315) GN=leuB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.279e-11
Identity = 60/213 (28.17%), Postives = 99/213 (46.48%), Query Frame = 1
Query:  160 PGDGIGPEIAES----VKQVFRTAEVPVEWEEH-YVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMA-----TPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT-------RYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            PGDGIGPEI       ++ +        + E H + G  ID   +  LT ++L + +R    L G +       P  +  + L L LRK LNL+AN+RP   + G  +       R +  +L+ +RE T G Y G                TR+   R+   AF  A +  R +++++ K N++  +  L+ K   EV++ YPE+T   +++D
Sbjct:    9 PGDGIGPEILNGSLSLLEIISNKYNFNYQIEHHEFGGASIDTFGEP-LTEKTLNACKRADAILLGAIGGPKWTDPNNRPEQGL-LKLRKSLNLFANIRPTTVVKGASSLSPLKEERVEGTDLVIVRELTSGIYFGEPRHFNNHEALDSLTYTREEIERIVHVAFKLAASR-RGKLTSVDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVD 217          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_STAAM (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=leuB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.279e-11
Identity = 60/213 (28.17%), Postives = 99/213 (46.48%), Query Frame = 1
Query:  160 PGDGIGPEIAES----VKQVFRTAEVPVEWEEH-YVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMA-----TPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT-------RYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            PGDGIGPEI       ++ +        + E H + G  ID   +  LT ++L + +R    L G +       P  +  + L L LRK LNL+AN+RP   + G  +       R +  +L+ +RE T G Y G                TR+   R+   AF  A +  R +++++ K N++  +  L+ K   EV++ YPE+T   +++D
Sbjct:    9 PGDGIGPEILNGSLSLLEIISNKYNFNYQIEHHEFGGASIDTFGEP-LTEKTLNACKRADAILLGAIGGPKWTDPNNRPEQGL-LKLRKSLNLFANIRPTTVVKGASSLSPLKEERVEGTDLVIVRELTSGIYFGEPRHFNNHEALDSLTYTREEIERIVHVAFKLAASR-RGKLTSVDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVD 217          
The following BLAST results are available for this feature:
BLAST of CN188827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
LEU3_VIBVU3.276e-1130.633-isopropylmalate dehydrogenase OS=Vibrio vulnific... [more]
LEU3_VIBPA3.276e-1129.733-isopropylmalate dehydrogenase OS=Vibrio parahaem... [more]
LEU3_THEMA3.276e-1129.363-isopropylmalate dehydrogenase OS=Thermotoga mari... [more]
LEU3_MYCSS3.276e-1128.503-isopropylmalate dehydrogenase OS=Mycobacterium s... [more]
LEU3_MYCSK3.276e-1128.503-isopropylmalate dehydrogenase OS=Mycobacterium s... [more]
LEU3_MYCSJ3.276e-1128.503-isopropylmalate dehydrogenase OS=Mycobacterium s... [more]
LEU3_BACHD3.276e-1129.413-isopropylmalate dehydrogenase OS=Bacillus halodu... [more]
LEU3_STAAS4.279e-1128.173-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_STAAN4.279e-1128.173-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_STAAM4.279e-1128.173-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188827 ID=CN188827; Name=CN188827; organism=Citrus sinensis; type=EST; length=751bp
GCGTTAAGGATCAATCAATGGCAACGCAGCTGCTGAGACGAGCTCCTGGG
AAGCCGATCGCGCCAGATCCTCTCAGCCACAAACCCCAACCCTAATTTAG
CTTTGCCTATAGCCAGGGCCTTCTCCTCCGATATTACTCCGATCACCGCC
ACTCTCTTTCCCGGCGACGGAATCGGCCCCGAGATCGCCGAGTCCGTTAA
ACAGGTATTTAGGACAGCTGAGGTGCCAGTTGAATGGGAGGAGCATTATG
TGGGGACTGAAATAGATCCTAGAACACAAAGTTTTCTGACATGGGAAAGT
TTAGAATCTGTGAGAAGGAACAAGGTGGGCTTGAAAGGGCCTATGGCAAC
ACCAATTGGAAAGGGTCATCGTTCATTGAATCTTACTTTGAGGAAAGAAC
TTAATTTGTATGCCAATGTTAGGCCTTGCTACAGCCTCCCTGGATATAAA
ACTCGCTATGATGATGTGAATCTTATCACTATCCGTGAGAACACAGAAGG
AGAGTACAGTGGACTTGAACATCAAGTGGTGAGAGGTGTGGTTGAAAGTC
TCAAAATCATTACTCGTCAGGCTAGTTTGAGAGTTGCTGAATATGCGTTT
CACTATGCGAAGACACATGGAAGAGAAAGAGTATCTGCAATACACAAAGC
AAATATTATGCAGAAAACTGATGGGCTTTTTTTGAAGTGTTGTCGTGAGG
TTGCCGAGAAGTACCCTGAGATAACATATGAGGAAGTTGTTATCGACAAT
T
back to top