CN188827

Overview
NameCN188827
Unique NameCN188827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_ARCFU (3-isopropylmalate dehydrogenase OS=Archaeoglobus fulgidus GN=leuB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.109e-34
Identity = 79/198 (39.90%), Postives = 119/198 (60.10%), Query Frame = 1
Query:  154 LFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            + PGDGIG E+ E+   +    ++P E+  +  G E   +    L  E+LE+ R++   L G      G+    + + LR+EL  +ANVRP  ++ G +  Y  ++++ +RENTE  Y G E      V E++++ITR+AS R+A YAF  AK  GR++V+A+HKAN+M+KT GLF   CREVA+ YPEI Y +  ID
Sbjct:    6 VIPGDGIGKEVMEAAMLILEKLDLPFEYSYYDAGDEALEKYGKALPDETLEACRKSDAVLFGAA----GETAADVIVRLRRELGTFANVRPAKAIEGIECLYPGLDIVVVRENTECLYMGFEFGF-GDVTEAIRVITREASERIARYAFELAKREGRKKVTALHKANVMKKTCGLFRDVCREVAKDYPEIQYNDYYID 198          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: IDH4_ARATH (Putative isocitrate dehydrogenase [NAD] subunit-like 4 OS=Arabidopsis thaliana GN=IDH4 PE=5 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.974e-32
Identity = 76/191 (39.79%), Postives = 120/191 (62.83%), Query Frame = 1
Query:  172 IGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKI-ITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQK-TDGLFLKCCREVAEKYPEITYEEV 738
            I   +  +V QV    + PV +E +     I  +  + LTWE ++S+R+NKV L G +   +  G        RKEL+L+A++  C++L G  +R+++V+++ IRENTEGEY+G EH+VV GV+ES ++ +T+  S R+A+YAF YA    R++V+A+H     +K  D  FL+ C+EVA+ YP ITY E+
Sbjct:    8 IDSNVTNAVHQVMDAMQAPVYFETYI----IKGKNMNHLTWEVVDSIRKNKVCLNGRVNNSLCGG-------ARKELDLFASLVDCFNLNGQPSRHENVDIVVIRENTEGEYAGREHEVVPGVIESFQVTMTKFWSDRIAKYAFEYAHFSKRKKVTAVHNNGKYEKLADAFFLESCQEVAKMYPNITYNEI 187          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_SULTO (3-isopropylmalate dehydrogenase OS=Sulfolobus tokodaii GN=leuB PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 3.723e-31
Identity = 77/205 (37.56%), Postives = 119/205 (58.05%), Query Frame = 1
Query:  145 TATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            T  L  GDGIGPEI    K++         +P+E+ E   G     R    L  +SL+ + +  + LKGP    +G+    + + LR+  ++YAN+RP  S+PG  T+Y +V+++ +RENTE  Y G EH V  GV   +KIITR AS R+A+   ++A    R++V+ +HKAN+M+ TDGLF + CR V +   ++ Y E+ +D
Sbjct:    4 TVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGP----VGESAADVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFA-LRRRKKVTCVHKANVMRITDGLFAEACRSVLK--GKVEYSEMYVD 201          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_METTH (3-isopropylmalate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=leuB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.415e-30
Identity = 73/198 (36.87%), Postives = 116/198 (58.59%), Query Frame = 1
Query:  154 LFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            + PGDGIG E+ E+   +  T ++ +E+     G     RT + L  E+LE+V   +  L G      G+    + + LR+E +L+AN+RP  SLPG    Y D++ + +RENTE  Y G E     G V   +IITR AS R++++AF YA+  G ++V+A+HKAN+++KTDG+F     +VA +YP++   +  +D
Sbjct:    8 VIPGDGIGVEVMEAALHILNTLDLDLEFIHADAGDACLKRTGTALPEETLEAVGEARATLFGAA----GESAADVIVRLRREFDLFANLRPVKSLPGVPCLYPDLDFVIVRENTEDLYVGDEEYTPEGAVAK-RIITRTASRRISQFAFQYAQKEGMQKVTAVHKANVLKKTDGIFRDEFYKVASEYPQMEATDYYVD 200          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_SULSO (3-isopropylmalate dehydrogenase OS=Sulfolobus solfataricus GN=leuB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.761e-26
Identity = 68/202 (33.66%), Postives = 113/202 (55.94%), Query Frame = 1
Query:  154 LFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            + PGDGIGPE+ E  K++         + ++  E   G     +    L   +L+ + +  + LKGP    +G+    + + LR+  ++YAN+RP  SLP  +++Y +V+L+ +RENTE  Y G E     GV  ++K+ T  AS R+   A +YA    R +V+ +HKAN+M+ TDGLF   CRE+ +   ++ +EE+ +D
Sbjct:    7 VIPGDGIGPELYEGSKRIIAKLIEKYNLDIDLIEVEAGDVALNKYGEALPRHTLDVIEKADMILKGP----VGETAMDVVVKLRQMYDMYANIRPAKSLPNVQSKYPNVDLVIVRENTEDLYKGFEFVTSTGVTIAIKVTTEFASKRIVNVALNYALMR-RRKVTCVHKANVMRVTDGLFASVCREILK--GKVNFEEMYVD 201          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: IDH_ARCFU (Isocitrate dehydrogenase [NADP] OS=Archaeoglobus fulgidus GN=icd PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.052e-25
Identity = 74/214 (34.58%), Postives = 113/214 (52.80%), Query Frame = 1
Query:  157 FPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT---RYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKI----------------------ITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK 711
            F GDGIG ++  +  +V   A       V W + Y G +      ++L  ++L +++  +V LKGP+ TP+G G+RSLN+T+R+ L+LYANVRP Y L G  +     + VN +  RENTE  Y+G+E    RG  E+LK+                      I+  A+ R+   A  YA  + R+ V+ +HK NIM+ T+G F     EVA++
Sbjct:   33 FEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPLTTPVGGGYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWP--RGSEEALKLIRFLKNEFGVTIREDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQ 244          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_METJA (3-isopropylmalate/3-methylmalate dehydrogenase OS=Methanocaldococcus jannaschii GN=leuB PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.206e-25
Identity = 70/199 (35.18%), Postives = 109/199 (54.77%), Query Frame = 1
Query:  163 GDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYA---KTHGRE-RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            GDGIG E+  +  QV     +P E+     G E+  RT   L  E++E+       L G      G+    + + LR  L+ YAN+RP  +  G K    D++ + +RENTEG Y G+E ++  G+  + ++IT +A  R+  +AF+ A   K  G+E +V+  HKAN+++ TDGLF K   +VAE+Y +I  E+  ID
Sbjct:    9 GDGIGKEVVPATIQVLEATGLPFEFVYAEAGDEVYKRTGKALPEETIETALDCDAVLFGAA----GETAADVIVKLRHILDTYANIRPVKAYKGVKCLRPDIDYVIVRENTEGLYKGIEAEIDEGITIATRVITEKACERIFRFAFNLARERKKMGKEGKVTCAHKANVLKLTDGLFKKIFYKVAEEYDDIKAEDYYID 203          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: IDH_BACSU (Isocitrate dehydrogenase [NADP] OS=Bacillus subtilis GN=icd PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.800e-25
Identity = 70/216 (32.41%), Postives = 110/216 (50.93%), Query Frame = 1
Query:  163 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC---YSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESL-----------------------KIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK 711
            GDG GP+I  +  +V   A       E  + W+E Y G +   +T  +L  E+L+ +R   + +KGP+ TP+G G RSLN+ LR+EL+L+  +RP      +P    R +D +++  RENTE  Y+G+E+      V+ L                       K ++ + + R+   A  YA  HGR+ V+ +HK NIM+ T+G F     E+AEK
Sbjct:   27 GDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLTTPVGGGIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEK 242          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: IDH_STRSL (Isocitrate dehydrogenase [NADP] OS=Streptococcus salivarius GN=icd PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.675e-23
Identity = 77/236 (32.63%), Postives = 122/236 (51.69%), Query Frame = 1
Query:  163 GDGIGPEIAESVKQVF-RTAEVP------VEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT---RYDDVNLITIRENTEGEYSGLEHQV----VRGVVE-------------------SLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYPE------ITYEEVVIDN 750
            GDG+G +I ++ + +F +  EV       +EW+E   G +   +T  +L  E+LE++R + V +KGP+ TP+G G RSLN+ LR+EL+LYA VRP     G  +     +  N+   RENTE  Y+G+E +     V+ V+E                    +K I+ + S R+   A  YA  +  ++V+ +HK NI + T+G F K   EVA E Y E      +   +++ DN
Sbjct:   25 GDGVGHDIWKNAQAIFDKAVEVAYEGKRHIEWQELLAGKKAYDKTGEWLPKETLEAIRESLVAIKGPLETPVGGGIRSLNVALRQELDLYACVRPVRYFDGVASPLKEPEKTNITIFRENTEDIYAGIEWEAGTADVKRVIEFLQTEMNVNKIRFPESSSIGIKPISIEGSKRLIRSAIDYALKNNLKKVTLVHKGNIQKFTEGGFRKWGYEVAQEDYKEELLAGRLEINDIIADN 260          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: IDH_STAES (Isocitrate dehydrogenase [NADP] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=icd PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.675e-23
Identity = 67/206 (32.52%), Postives = 111/206 (53.88%), Query Frame = 1
Query:  163 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC---YSLPGYKTRYDDVNLITIRENTEGEYSGLEHQ----VVRGVVE-------------------SLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLF 681
            GDGIGP+I ++  +V   A       E  +EW+E   G +    T  +L  E+LE+++   + +KGP+ TPIG G RSLN+ LR+EL+L+  +RP      +P    R +DV+++  RENTE  Y+G+E +     V+ V++                    +K ++++ + R+   A  YA  + R+ V+ +HK NIM+ T+G F
Sbjct:   26 GDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAYDETGEWLPQETLETIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPEDVDMVIFRENTEDIYAGIEFKQGTSEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYALDNNRKSVTLVHKGNIMKFTEGSF 231          
The following BLAST results are available for this feature:
BLAST of CN188827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
LEU3_ARCFU2.109e-3439.903-isopropylmalate dehydrogenase OS=Archaeoglobus f... [more]
IDH4_ARATH1.974e-3239.79Putative isocitrate dehydrogenase [NAD] subunit-li... [more]
LEU3_SULTO3.723e-3137.563-isopropylmalate dehydrogenase OS=Sulfolobus toko... [more]
LEU3_METTH1.415e-3036.873-isopropylmalate dehydrogenase OS=Methanobacteriu... [more]
LEU3_SULSO2.761e-2633.663-isopropylmalate dehydrogenase OS=Sulfolobus solf... [more]
IDH_ARCFU3.052e-2534.58Isocitrate dehydrogenase [NADP] OS=Archaeoglobus f... [more]
LEU3_METJA5.206e-2535.183-isopropylmalate/3-methylmalate dehydrogenase OS=... [more]
IDH_BACSU6.800e-2532.41Isocitrate dehydrogenase [NADP] OS=Bacillus subtil... [more]
IDH_STRSL1.675e-2332.63Isocitrate dehydrogenase [NADP] OS=Streptococcus s... [more]
IDH_STAES1.675e-2332.52Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188827 ID=CN188827; Name=CN188827; organism=Citrus sinensis; type=EST; length=751bp
GCGTTAAGGATCAATCAATGGCAACGCAGCTGCTGAGACGAGCTCCTGGG
AAGCCGATCGCGCCAGATCCTCTCAGCCACAAACCCCAACCCTAATTTAG
CTTTGCCTATAGCCAGGGCCTTCTCCTCCGATATTACTCCGATCACCGCC
ACTCTCTTTCCCGGCGACGGAATCGGCCCCGAGATCGCCGAGTCCGTTAA
ACAGGTATTTAGGACAGCTGAGGTGCCAGTTGAATGGGAGGAGCATTATG
TGGGGACTGAAATAGATCCTAGAACACAAAGTTTTCTGACATGGGAAAGT
TTAGAATCTGTGAGAAGGAACAAGGTGGGCTTGAAAGGGCCTATGGCAAC
ACCAATTGGAAAGGGTCATCGTTCATTGAATCTTACTTTGAGGAAAGAAC
TTAATTTGTATGCCAATGTTAGGCCTTGCTACAGCCTCCCTGGATATAAA
ACTCGCTATGATGATGTGAATCTTATCACTATCCGTGAGAACACAGAAGG
AGAGTACAGTGGACTTGAACATCAAGTGGTGAGAGGTGTGGTTGAAAGTC
TCAAAATCATTACTCGTCAGGCTAGTTTGAGAGTTGCTGAATATGCGTTT
CACTATGCGAAGACACATGGAAGAGAAAGAGTATCTGCAATACACAAAGC
AAATATTATGCAGAAAACTGATGGGCTTTTTTTGAAGTGTTGTCGTGAGG
TTGCCGAGAAGTACCCTGAGATAACATATGAGGAAGTTGTTATCGACAAT
T
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