CN188827

Overview
NameCN188827
Unique NameCN188827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:103..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_NOCFA (3-isopropylmalate dehydrogenase OS=Nocardia farcinica GN=leuB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.088e-14
Identity = 60/208 (28.85%), Postives = 95/208 (45.67%), Query Frame = 1
Query:  154 LFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNK---VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSG----LEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            + PGDGIGPE+     +V       VE  E+ +G +    T   L    L  +R +    +G  G  + P G   R L L  R EL+ + N+RP     G ++      D++ + +RE TEG Y+G    +  +    V   +   TR    RV  YAF  A+   R+ ++ +HK N++     L+ +   EV  ++PE+T     ID
Sbjct:    5 VIPGDGIGPEVIAEALKVLDVVVPGVEKTEYDLGAKRYHATGEILPDSVLPELREHDAILLGAIGDPSVPSGVLERGLLLRTRFELDHHVNLRPSRLFTGVRSPLAGAPDIDFVVVREGTEGPYTGTGGAIRVRTPHEVATEVSTNTRFGIERVVRYAFAKAQAR-RKHLTLVHKTNVLTFAGSLWQRTVDEVGAEFPEVTVAYQHID 211          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_STRCO (3-isopropylmalate dehydrogenase OS=Streptomyces coelicolor GN=leuB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.421e-14
Identity = 60/215 (27.91%), Postives = 103/215 (47.91%), Query Frame = 1
Query:  142 ITATLFPGDGIGPEI-AESVKQVFRTA--EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNK---VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQVVRG----VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            +   + PGDGIG E+ AE +K +      +V +E +E   G      T   LT   L++++ +    +G  G  + P G   R   L LR   + + N+RP   LPG  T      +++ + +RE TEG Y+G    + +G    V   + + T     RV   AF  A+   R++++ +HK N++     L+     +VA +YPE+T + + +D
Sbjct:    5 LNLAVIPGDGIGQEVVAEGLKVLSAVLPQDVKLETKEFDFGARRYHATGETLTDADLDALKAHDAILLGAIGDPSVPSGVLERGFLLKLRFAFDHHVNLRPSKLLPGVATPLAGQPEIDFVVVREGTEGPYTGNGGTIRKGTEHEVATEVSVNTAYGVERVVRDAFARAQARPRKKLTLVHKNNVLTFAGHLWTNIFNKVAAEYPEVTTDYLHVD 219          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_STRAW (3-isopropylmalate dehydrogenase OS=Streptomyces avermitilis GN=leuB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.424e-14
Identity = 58/215 (26.98%), Postives = 102/215 (47.44%), Query Frame = 1
Query:  142 ITATLFPGDGIGPEIAESVKQVFRTA---EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNK---VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQVVRG----VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            I   + PGDGIG E+     +V   A   +V +E +E   G      T   LT   L++++++    +G  G  + P G   R   L LR   + + N+RP   LPG +T      +++ + +RE TEG Y+G    +  G    V   + + T     RV   A+  A+   R++++ +HK N++     L+     +V E++P++T E + +D
Sbjct:    5 INLAVIPGDGIGQEVVAQGLKVLSAALPSDVKLETKEFDFGARRYHATGETLTDADLDALKQHDAILLGAIGDPSVPSGVLERGFLLKLRFAFDHHVNLRPSKLLPGVETPLAGQPEIDFVVVREGTEGPYTGNGGTIRTGTPHAVATEVSLNTAFGIERVVRDAYARAQARPRKKLALVHKNNVLVHAGHLWTDIFNKVGEEFPDVTTEYMHVD 219          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_BIFLI (3-isopropylmalate dehydrogenase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=leuB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.424e-14
Identity = 62/211 (29.38%), Postives = 96/211 (45.50%), Query Frame = 1
Query:  154 LFPGDGIGPEIAESVKQVFRTAEVPV---EWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKG---HRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQVVRG----VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            + PGDGIG E+    ++    A   V   E+E   +G E   R  + L  +    ++ N   L G +  P  K     R L L LR +L+ Y N+RP     G  +      D++ + +RE TEG Y G    V R     V   + I T     RV  YAF  A    ++ V+ +HK N++     ++ +   +V E+YPE+T++   ID
Sbjct:    9 VIPGDGIGKEVTPWAQKALEKAAEGVADFEYENFDLGAERYLRDGAILPEDEEGRIKANDAILLGAVGDPRIKAGILERGLLLKLRFDLDQYVNLRPSKLYKGVTSPLANPGDIDFVVVREGTEGLYCGAGGAVRRNTPQEVATEVSINTAYGVERVVRYAFKLAMKR-KKHVTLVHKKNVLVNAGDMWQRIVDKVGEEYPEVTHDYQHID 218          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: DLPA_LEGPH (Protein dlpA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=dlpA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.424e-14
Identity = 61/237 (25.74%), Postives = 108/237 (45.57%), Query Frame = 1
Query:  139 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFL---TWESLESVRRNKVGL---------KGPMATPIGKGHR---SLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESL-------------------KIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            PI   + PGDGIG E+ E+   VF   +VPV      +G E   +  + +   TW+ + S     +G          K  ++  + K +    S  + LR+ L+L+ANVRPC+S+      +   N   IREN+EG Y G ++  +   + SL                   ++ ++    R+ ++AF +A   G  RV+   K N+++++     K     A++YP+I  + + +D
Sbjct:    6 PIKIAVLPGDGIGIEVTEATLPVFEVLDVPVILNYGDIGWEFWKKEGAAIPSRTWQLIASSDTVLLGAITSKPQREAKQELSNALKKSNPYYVSPVIQLRQGLDLFANVRPCFSIDDQSKPF---NFCIIRENSEGLYCGFDYFPLPKAIHSLLAESQHWQTIPADEASCALRLQSKSGLTRLFDFAFKHAMQTGMPRVTLADKPNVLRESGEFTRKIFESTAQRYPKIQADILNVD 239          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_MYCLE (3-isopropylmalate dehydrogenase OS=Mycobacterium leprae GN=leuB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 58/204 (28.43%), Postives = 94/204 (46.08%), Query Frame = 1
Query:  163 GDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNK---VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQVVRG----VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYP--EITYEEV 738
            GDGIGPE+     ++       V+   + +G      T   L    L  +R +    +G  G  + P G   R L L LR EL+ + N+RP    PG  +      D++ + +RE TEG Y+G    +  G    V   + + T     RV + AF  A+   R+ ++ +HK N++     L+ +  +EV EKYP  E+ Y+ +
Sbjct:    8 GDGIGPEVVAQAVKILDVVLPGVQKTTYDLGARRYHTTGELLPESVLAELREHDAILLGAVGDPSVPSGVLERGLLLRLRFELDHHINLRPARLYPGVNSLLAGKPDIDFVVVREGTEGPYTGTGGAIRVGTPNEVATEVSVNTAFGVRRVVQDAFERARQR-RKHLTLVHKNNVLTYAGTLWCRIVQEVGEKYPDVEVVYQHI 210          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_MYCLB (3-isopropylmalate dehydrogenase OS=Mycobacterium leprae (strain Br4923) GN=leuB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 58/204 (28.43%), Postives = 94/204 (46.08%), Query Frame = 1
Query:  163 GDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNK---VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQVVRG----VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYP--EITYEEV 738
            GDGIGPE+     ++       V+   + +G      T   L    L  +R +    +G  G  + P G   R L L LR EL+ + N+RP    PG  +      D++ + +RE TEG Y+G    +  G    V   + + T     RV + AF  A+   R+ ++ +HK N++     L+ +  +EV EKYP  E+ Y+ +
Sbjct:    8 GDGIGPEVVAQAVKILDVVLPGVQKTTYDLGARRYHTTGELLPESVLAELREHDAILLGAVGDPSVPSGVLERGLLLRLRFELDHHINLRPARLYPGVNSLLAGKPDIDFVVVREGTEGPYTGTGGAIRVGTPNEVATEVSVNTAFGVRRVVQDAFERARQR-RKHLTLVHKNNVLTYAGTLWCRIVQEVGEKYPDVEVVYQHI 210          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: IDH_SYNY3 (Isocitrate dehydrogenase [NADP] OS=Synechocystis sp. (strain PCC 6803) GN=icd PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 61/215 (28.37%), Postives = 96/215 (44.65%), Query Frame = 1
Query:  163 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPR--TQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLE----------------------------HQVVRGVVESLKIITRQASLRVAEYAFHYAK--THGRERVSAIHKANIMQKTDGLF 681
            GDG G +I  + + V   A          + W + Y G E      T      ++L +++   V +KGP+ TP+G G RSLN+ LR+  +LY  VRPC   PG  + +   + +++I  RENTE  Y G+E                             Q+       +K I++  S R+   A  +AK     ++ V+ +HK NIM+ T+G F
Sbjct:   34 GDGTGVDIWPATELVINAAIAKAYGGREEINWFKVYAGDEACELYGTYQIFPEDTLTAIKEYGVAIKGPLTTPVGGGIRSLNVALRQIFDLYTCVRPCRYYPGTPSPHKTPEKLDIIVYRENTEDIYLGIEWAEGTEGAKKLIAYLNDELIPTTPALGKKQIRLDSGIGIKPISKTGSQRLVRRAILHAKRLPKAKQMVTLVHKGNIMKFTEGPF 248          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_LACLA (3-isopropylmalate dehydrogenase OS=Lactococcus lactis subsp. lactis GN=leuB PE=3 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.400e-14
Identity = 61/216 (28.24%), Postives = 102/216 (47.22%), Query Frame = 1
Query:  163 GDGIGPEIAESVKQVFRTAEVPVEWE-----EHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLN----------LTLRKELNLYANVRPCYSLPGYK-----TRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN 750
            GDGIGPEI  +   V +     +++E     + + G  ID      L  E+L++V+     L   +      GH   N          L LRKEL LYANVRP    P  K        ++V+ + IRE T G Y G +H++       +   +     R+  +AF  A++  R+ ++++ K N++  T  L+ K   E+A++YP++  E  ++D+
Sbjct:   10 GDGIGPEIMSAGLSVLKAVSKKIDFEYELEAKDFGGIAIDKHGHP-LPEETLQAVKNADAILLAAI------GHPKYNNAKVRPEQGLLALRKELGLYANVRPLKIYPALKKLSPIRNVENVDFLVIRELTGGIYFG-QHELADDKARDVNDYSADEIRRILHFAFKSAQSRPRKLLTSVDKQNVL-ATSKLWRKMADEIADEYPDVRLEHQLVDS 216          
BLAST of CN188827 vs. ExPASy Swiss-Prot
Match: LEU3_CORJK (3-isopropylmalate dehydrogenase OS=Corynebacterium jeikeium (strain K411) GN=leuB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.053e-14
Identity = 60/206 (29.13%), Postives = 93/206 (45.15%), Query Frame = 1
Query:  163 GDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKG----PMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQVVRG----VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 747
            GDGIG E+     +V       VE  ++ +G     R    LT E L+S+R +   L G    P   P G   R L L LR +L+   N+RP    PG  +      D++ + +RE TEG Y G    +  G    V   +   T     RV   AF  A++  R++++ +HK N++     L+ +    V ++YPE+  +   ID
Sbjct:    8 GDGIGTEVTAEALKVLHALRDDVETTDYDLGARRYLRNGELLTDEDLDSLREHDAILLGAIGDPRTVPAGVLERGLLLPLRFKLDHAVNLRPSKLYPGSSSPLANPGDIDFVVVREGTEGLYCGNGGTLRAGTDYEVASEVSQNTYYGVERVVRDAFERAQSR-RKKLTWVHKTNVLVNAGSLWQRAIETVGQEYPEVQVDYNHID 212          
The following BLAST results are available for this feature:
BLAST of CN188827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
LEU3_NOCFA1.088e-1428.853-isopropylmalate dehydrogenase OS=Nocardia farcin... [more]
LEU3_STRCO1.421e-1427.913-isopropylmalate dehydrogenase OS=Streptomyces co... [more]
LEU3_STRAW2.424e-1426.983-isopropylmalate dehydrogenase OS=Streptomyces av... [more]
LEU3_BIFLI2.424e-1429.383-isopropylmalate dehydrogenase OS=Bifidobacterium... [more]
DLPA_LEGPH2.424e-1425.74Protein dlpA OS=Legionella pneumophila subsp. pneu... [more]
LEU3_MYCLE4.135e-1428.433-isopropylmalate dehydrogenase OS=Mycobacterium l... [more]
LEU3_MYCLB4.135e-1428.433-isopropylmalate dehydrogenase OS=Mycobacterium l... [more]
IDH_SYNY34.135e-1428.37Isocitrate dehydrogenase [NADP] OS=Synechocystis s... [more]
LEU3_LACLA5.400e-1428.243-isopropylmalate dehydrogenase OS=Lactococcus lac... [more]
LEU3_CORJK7.053e-1429.133-isopropylmalate dehydrogenase OS=Corynebacterium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188827 ID=CN188827; Name=CN188827; organism=Citrus sinensis; type=EST; length=751bp
GCGTTAAGGATCAATCAATGGCAACGCAGCTGCTGAGACGAGCTCCTGGG
AAGCCGATCGCGCCAGATCCTCTCAGCCACAAACCCCAACCCTAATTTAG
CTTTGCCTATAGCCAGGGCCTTCTCCTCCGATATTACTCCGATCACCGCC
ACTCTCTTTCCCGGCGACGGAATCGGCCCCGAGATCGCCGAGTCCGTTAA
ACAGGTATTTAGGACAGCTGAGGTGCCAGTTGAATGGGAGGAGCATTATG
TGGGGACTGAAATAGATCCTAGAACACAAAGTTTTCTGACATGGGAAAGT
TTAGAATCTGTGAGAAGGAACAAGGTGGGCTTGAAAGGGCCTATGGCAAC
ACCAATTGGAAAGGGTCATCGTTCATTGAATCTTACTTTGAGGAAAGAAC
TTAATTTGTATGCCAATGTTAGGCCTTGCTACAGCCTCCCTGGATATAAA
ACTCGCTATGATGATGTGAATCTTATCACTATCCGTGAGAACACAGAAGG
AGAGTACAGTGGACTTGAACATCAAGTGGTGAGAGGTGTGGTTGAAAGTC
TCAAAATCATTACTCGTCAGGCTAGTTTGAGAGTTGCTGAATATGCGTTT
CACTATGCGAAGACACATGGAAGAGAAAGAGTATCTGCAATACACAAAGC
AAATATTATGCAGAAAACTGATGGGCTTTTTTTGAAGTGTTGTCGTGAGG
TTGCCGAGAAGTACCCTGAGATAACATATGAGGAAGTTGTTATCGACAAT
T
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