CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:627..1471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH3A_RAT (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Idh3a PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.639e-65
Identity = 121/200 (60.50%), Postives = 159/200 (79.50%), Query Frame = -1
Query:  248 VVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAIC 847
            +V GVV+S+K+IT  AS R+AE+AF YA+ + R  V+A+HKANIM+ +DGLFL+ CREVAE   +I + E+ +D  C+ +V++P+ FDVLVMPNLYGDI+SDLCAGLIGGLG+T S NIG  G+A+ E+VHG+APDIAGK++ANPTALLLS+V MLRH+ L D A +I+ A  +TI +GK  T DLGG+S  SDFT+ IC
Sbjct:  160 IVDGVVQSIKLITEGASKRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTQSGNIGANGVAIFESVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLFDHAAKIEAACFATIKDGKSLTKDLGGNSKCSDFTEEIC 359          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH3A_CAEEL (Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=F43G9.1 PE=1 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 9.945e-63
Identity = 115/200 (57.50%), Postives = 157/200 (78.50%), Query Frame = -1
Query:  248 VVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAIC 847
            +V GVV+S+K+IT  AS  VA +AF YA+ +GR+ V+A+HKANIM+++DGLFL  CRE A  YP+I ++E  +D  C+ +V++P+ +DVLVMPNLYGDI+SDLCAGL+GGLG+TPS NIG+G  A+ E+VHG+APDIAG++ ANPTALLLS+V MLR++ L   A RI+ A+   IA+G+ +T DLGG+ T S FT  +C
Sbjct:  153 IVPGVVQSIKLITETASRNVASFAFEYARQNGRKVVTAVHKANIMRQSDGLFLSICREQAALYPDIKFKEAYLDTVCLNMVQDPSQYDVLVMPNLYGDILSDLCAGLVGGLGVTPSGNIGKGA-AVFESVHGTAPDIAGQDKANPTALLLSAVMMLRYMNLPQHAARIEKAVFDAIADGRAKTGDLGGTGTCSSFTADVC 351          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDHB_DICDI (Isocitrate dehydrogenase [NAD] regulatory subunit B, mitochondrial OS=Dictyostelium discoideum GN=idhB PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.033e-60
Identity = 109/200 (54.50%), Postives = 151/200 (75.50%), Query Frame = -1
Query:  239 GVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 838
            GVV+SLKIIT++AS R+A YAF YAK +GR++V+A+HKANI ++TDGLFL  C ++A++YPEI +E  +IDNCCM LVK+P  +DV+V PNLYG+I+S++ A L+GG GL    N+GEG I      H  A DIAGK+ ANPT LLL+SV ML+HL L++ A +++NA+ + I EG   T+D+GG S+T  FT A+ D++
Sbjct:  157 GVVQSLKIITKEASERIARYAFEYAKANGRKKVTAVHKANIQKQTDGLFLATCTQIAKEYPEIKFENTIIDNCCMQLVKSPEQYDVMVTPNLYGNIVSNIGAALVGGPGLAGGANVGEGSIIFEMGAHHVAADIAGKDKANPTGLLLASVMMLKHLGLNEHATKVENAVKAVIKEGTL-TSDIGGKSSTKQFTGAVIDYI 355          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH2_SCHPO (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Schizosaccharomyces pombe GN=idh2 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.994e-59
Identity = 116/206 (56.31%), Postives = 151/206 (73.30%), Query Frame = -1
Query:  239 VVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEG-KYRTADLGGSSTTSDFTKAICDHL 847
            V+ GVV+S+K+ITR AS RV  YAF YA+  G+  ++ +HKA IM+  DGLFL+C +E+A +YP+I   E ++DN C+ +V +P  ++  V+VMPNLYGDI+SD+CAGLIGGLGLTPS NIG    ++ EAVHG+APDIAGK LANPTALLLSSV ML+H+ L+D A RI++AI  T+A     RT DLGG S    +T AI   L
Sbjct:  173 VIPGVVQSIKLITRAASERVIRYAFQYARQTGKNNITVVHKATIMRMADGLFLECAKELAPEYPDIELREEILDNACLKIVTDPVPYNNTVMVMPNLYGDIVSDMCAGLIGGLGLTPSGNIGNQA-SIFEAVHGTAPDIAGKGLANPTALLLSSVMMLKHMNLNDYAKRIESAIFDTLANNPDARTKDLGGKSNNVQYTDAIISKL 377          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH3B_BOVIN (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Bos taurus GN=IDH3B PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 6.903e-56
Identity = 106/201 (52.74%), Postives = 138/201 (68.66%), Query Frame = -1
Query:  239 RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 841
            RGV+E LKI+TR  S R+A++AF YA   GR +V+A+HKANIM+  DGLFL+CC EVAE YP+I +E+++IDNCCM LV+NP  FDVLVMPNLYG+II +L AGL+GG G+ P  +                    G+N+ANPTA+LLS+  MLRHL L   ++ I  A+   I  GK RT D+GG STT+DF K++  HL
Sbjct:  180 RGVIECLKIVTRTKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFEKMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEHHSNMIAEAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 380          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH3B_MACFA (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Macaca fascicularis GN=IDH3B PE=2 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 9.015e-56
Identity = 106/201 (52.74%), Postives = 138/201 (68.66%), Query Frame = -1
Query:  239 RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 841
            RGV+E LKI+TR  S R+A++AF YA   GR +V+A+HKANIM+  DGLFL+CC EVAE YP+I +E ++IDNCCM LV+NP  FDVLVMPNLYG+II +L AGL+GG G+ P  +                    G+N+ANPTA+LLS+  MLRHL L   ++ I +A+   I  GK RT D+GG STT+DF K++  HL
Sbjct:  180 RGVIECLKIVTRAKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 380          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH3B_RAT (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Rattus norvegicus GN=Idh3B PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.177e-55
Identity = 106/201 (52.74%), Postives = 137/201 (68.16%), Query Frame = -1
Query:  239 RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 841
            RGV+E LKI+TR  S R+A++AF YA   GR +V+A+HKANIM+  DGLFL+CC EVAE YP+I +E ++IDNCCM LV+NP  FDVLVMPNLYG+II +L AGL+GG G+ P  +                    G+N+ANPTA+LLS+  MLRHL L   +  I +A+   I  GK RT D+GG STT+DF K++  HL
Sbjct:  180 RGVIECLKIVTRTKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 380          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH3B_HUMAN (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Homo sapiens GN=IDH3B PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 2.008e-55
Identity = 106/201 (52.74%), Postives = 137/201 (68.16%), Query Frame = -1
Query:  239 RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 841
            RGV+E LKI+TR  S R+A++AF YA   GR +V+A+HKANIM+  DGLFL+CC EVAE YP+I +E ++IDNCCM LV+NP  FDVLVMPNLYG+II +L AGL+GG G+ P  +                    G+N+ANPTA+LLS+  MLRHL L   +  I +A+   I  GK RT D+GG STT+DF K++  HL
Sbjct:  180 RGVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 380          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH3B_PONAB (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Pongo abelii GN=IDH3B PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.623e-55
Identity = 106/201 (52.74%), Postives = 136/201 (67.66%), Query Frame = -1
Query:  239 RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 841
            RGV+E LKI+TR  S R+A++AF YA   GR +V A+HKANIM+  DGLFL+CC EVAE YP+I +E ++IDNCCM LV+NP  FDVLVMPNLYG+II +L AGL+GG G+ P  +                    G+N+ANPTA+LLS+  MLRHL L   +  I +A+   I  GK RT D+GG STT+DF K++  HL
Sbjct:  180 RGVIECLKIVTRAKSQRIAKFAFDYATKKGRSKVIAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 380          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH3G_BOVIN (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Bos taurus GN=IDH3G PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.426e-55
Identity = 105/202 (51.98%), Postives = 140/202 (69.31%), Query Frame = -1
Query:  239 VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 844
            V GVVESLKIIT+  SLR+AEYAF  A+  GR++V+A+HKANIM+  DGLFL+CCREVA +YP+IT+E +++DN  M LV  P  FDV+VMPNLYG+I++++CAGL+GG GL    N G        A   +   IA KN+ANPTA LL+S  ML HL+LH  A  I+ A+L+++      T D+GG  TTS+  + I  H+
Sbjct:  181 VAGVVESLKIITKAKSLRIAEYAFQLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQGTTSEAIQDIIRHI 382          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
IDH3A_RAT1.639e-6560.50Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_CAEEL9.945e-6357.50Probable isocitrate dehydrogenase [NAD] subunit al... [more]
IDHB_DICDI6.033e-6054.50Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH2_SCHPO2.994e-5956.31Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDH3B_BOVIN6.903e-5652.74Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH3B_MACFA9.015e-5652.74Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH3B_RAT1.177e-5552.74Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH3B_HUMAN2.008e-5552.74Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH3B_PONAB2.623e-5552.74Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH3G_BOVIN3.426e-5551.98Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
back to top