CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_THETN (3-isopropylmalate dehydrogenase OS=Thermoanaerobacter tengcongensis GN=leuB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.506e-31
Identity = 71/170 (41.76%), Postives = 110/170 (64.71%), Query Frame = -1
Query:  287 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLG 793
            R+A  AF  A    R++++++ KAN+++ +  L+ K   EVA++YPE+    + +DNC M LVKNP  FDV++  N++GDI+SD  A ++G +G+ PS ++    + L E +HGSAPDIAGK +ANP A +LS   ML++     + A  I+ A+   + EG +RTADLG
Sbjct:  169 RIAVIAFE-AALRRRKKITSVDKANVLESSR-LWRKTVEEVAKRYPEVELNHMYVDNCAMQLVKNPFQFDVILTNNMFGDILSDEAAQIVGSIGILPSASLRGDRVGLYEPIHGSAPDIAGKKIANPLATILSVAMMLQYSFGEEEAAQDIRKAVERALEEG-FRTADLG 335          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_THETH (3-isopropylmalate dehydrogenase OS=Thermus thermophilus GN=leuB PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.506e-31
Identity = 79/186 (42.47%), Postives = 113/186 (60.75%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 793
            RVA  AF  A+   R+ V ++ KAN+++  +  + K   EV   YP++  E   +D   M LV++PA FDV+V  N++GDI+SDL + L G LGL PS ++G  G  + E VHGSAPDIAGK +ANPTA +LS+  ML H   L + A ++++A+   + E      DLGGS+ T  FT  +  HL
Sbjct:  164 RVARVAFEAARKR-RKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAAAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_CORK4 (3-isopropylmalate dehydrogenase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=leuB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.506e-31
Identity = 74/187 (39.57%), Postives = 114/187 (60.96%), Query Frame = -1
Query:  287 VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI--ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA--EGKYRTADLG 835
            V     + TR    RV  YAF  A+   R++++ +HK N++    GL+ +   +VA++Y ++T +   ID   + +V +P+ FDV+V  NL+GDII+DL   + GG+GL  S NI   G   ++ E VHGSAPDIAGK +A+PTA +LS   + RHL   D+AD I+ A+ + +A  +G  RT ++G
Sbjct:  148 VANETSVNTRYGVERVVRYAFDRAQER-RKKLTLVHKTNVLVYAGGLWQRTVDQVAQEYLDVTVDYCHIDAATIYMVTDPSRFDVIVTDNLFGDIITDLAGAVTGGIGLAASGNIDATGTNPSMFEPVHGSAPDIAGKGIADPTAAILSGALLFRHLGKTDEADAIEAAVRNDVASRDGSIRTEEVG 333          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_THET8 (3-isopropylmalate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=leuB PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.884e-31
Identity = 79/186 (42.47%), Postives = 113/186 (60.75%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 793
            RVA  AF  A+   R+ V ++ KAN+++  +  + K   EV   YP++  E   +D   M LV++PA FDV+V  N++GDI+SDL + L G LGL PS ++G  G  + E VHGSAPDIAGK +ANPTA +LS+  ML H   L + A ++++A+   + E      DLGGS+ T  FT  +  HL
Sbjct:  164 RVARVAFEAARKR-RKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_VIBF1 (3-isopropylmalate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=leuB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.685e-31
Identity = 77/189 (40.74%), Postives = 116/189 (61.38%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSS---TTSDFTKAICDHL 793
            R+A+ AF  A+   +  V +I KAN++Q +  L+ +   EVA+ YP++T   + IDN  M L+K+P+ FDV++  N++GDIISD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS+  MLR+ L   + A  I+ A+   ++ G+  TADL G     TTS     I +++
Sbjct:  175 RIAKIAFESARLRNKN-VYSIDKANVLQSSI-LWREVVEEVAKGYPDVTLNHMYIDNATMQLIKDPSQFDVMLCSNIFGDIISDECAMITGSMGMLPSASLNESNFGLYEPAGGSAPDIAGKNIANPVAQILSAALMLRYSLGEEEAAQSIEAAVSKALSAGEL-TADLAGDKPALTTSAMGDKIAEYI 360          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_METCA (3-isopropylmalate dehydrogenase OS=Methylococcus capsulatus GN=leuB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.685e-31
Identity = 73/184 (39.67%), Postives = 113/184 (61.41%), Query Frame = -1
Query:  245 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 793
            R+A  AF  A+   R R+ +I KAN+++ T+ L+ +   EV + YP++    + +DN  M LV+NP  FDV++  N++GDI+SD  A L G +G+ PS ++ E G  + E +HGSAPDIAG+ +ANP A +LS   MLR+  +    A+RI  A+ + + +G +RTAD+    T    T A+ D
Sbjct:  171 RIAHSAFQIARKRNR-RLCSIDKANVLECTE-LWREVVIEVGKDYPDVALSHMYVDNAAMQLVRNPKQFDVMLTDNMFGDILSDCAAMLTGSIGMLPSASLAESGKGMYEPIHGSAPDIAGRGIANPIATILSLAMMLRYSFDDAVSAERIGKAVQTALDQG-FRTADIASEGTVEVGTAAMGD 351          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BUCUE (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Uroleucon erigeronensis GN=leuB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.685e-31
Identity = 67/173 (38.73%), Postives = 113/173 (65.32%), Query Frame = -1
Query:  278 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSS 793
            R+A  AF  A+   +++V ++ K+N++ K+  L+ +   ++++ YP++    + IDN  M ++K+P+ FDV++  NL+GDI+SD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS   ++RH + L   AD+I  +++S + +G YRTAD+  +S
Sbjct:  174 RIAHLAFQLARNR-KKKVCSLDKSNVL-KSSILWKEIVEKISKNYPDVHLSHLYIDNAIMQIIKDPSQFDVILCSNLFGDIVSDECAAITGSIGMLPSASLNEKNFGLYEPAGGSAPDIAGKNIANPIAQILSVSMLVRHGMNLKKIADKIDESVVSVLKQG-YRTADISNNS 343          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_SHIBS (3-isopropylmalate dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=leuB PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.004e-30
Identity = 76/179 (42.46%), Postives = 113/179 (63.13%), Query Frame = -1
Query:  266 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 793
            R+A  AF  A+   R +V++I KAN++Q +  L+ +   E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDI GKN+ANP A +LS   +LR+ L+  D A  I+ AI   + EG  RT DL  G ++ ++D
Sbjct:  174 RIARIAFESARKR-RHKVTSIDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDITGKNIANPIAQILSLALLLRYSLDADDAACAIERAINRALEEG-IRTGDLARGAAAVSTD 349          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_ANADE (3-isopropylmalate dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=leuB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.004e-30
Identity = 74/186 (39.78%), Postives = 114/186 (61.29%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 793
            RV E AF  AK   +++V+++ KAN+++ +  L+ +    + +  P++  + +++D   M LV +PA  DV+V  N++GDI++D  + L G +G+ PS +IGE G  L E +HGSAPDIAGK +ANP   +LS+  +LRH L L  +A  I+ A+  TI +G  RTADLGG  +T      I   L
Sbjct:  170 RVVELAFRIAKGR-KKKVTSVDKANVLESSR-LWRELATAIGQANPDVALDHMLVDTAAMRLVTSPATLDVVVTENMFGDILTDEASVLAGSMGMLPSASIGEQGPGLYEPIHGSAPDIAGKGIANPVGTVLSAALLLRHSLGLEPEAAAIERAVDQTITDG-CRTADLGGKLSTRAMADEILKRL 352          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_VIBPA (3-isopropylmalate dehydrogenase OS=Vibrio parahaemolyticus GN=leuB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.311e-30
Identity = 76/189 (40.21%), Postives = 117/189 (61.90%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSS---TTSDFTKAICDHL 793
            R+A+ AF  A+   R++V +I KAN++Q +  L+ +   E+A+ YP++    + IDN  M L+K+PA FDV++  N++GDIISD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS+  MLR+ L     A  I++A+   ++ G+  TADL       TTS+    I +++
Sbjct:  175 RIAKIAFESARLR-RKKVCSIDKANVLQSSI-LWREVVEEIAKDYPDVELSHMYIDNATMQLIKDPAQFDVMLCSNIFGDIISDECAMITGSMGMLPSASLNESKFGLYEPAGGSAPDIAGKNIANPVAQILSAALMLRYSLGEEAAAQDIESAVSKALSAGEL-TADLASDKPALTTSEMGDKIAEYI 360          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
LEU3_THETN4.506e-3141.763-isopropylmalate dehydrogenase OS=Thermoanaerobac... [more]
LEU3_THETH4.506e-3142.473-isopropylmalate dehydrogenase OS=Thermus thermop... [more]
LEU3_CORK44.506e-3139.573-isopropylmalate dehydrogenase OS=Corynebacterium... [more]
LEU3_THET85.884e-3142.473-isopropylmalate dehydrogenase OS=Thermus thermop... [more]
LEU3_VIBF17.685e-3140.743-isopropylmalate dehydrogenase OS=Vibrio fischeri... [more]
LEU3_METCA7.685e-3139.673-isopropylmalate dehydrogenase OS=Methylococcus c... [more]
LEU3_BUCUE7.685e-3138.733-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_SHIBS1.004e-3042.463-isopropylmalate dehydrogenase OS=Shigella boydii... [more]
LEU3_ANADE1.004e-3039.783-isopropylmalate dehydrogenase OS=Anaeromyxobacte... [more]
LEU3_VIBPA1.311e-3040.213-isopropylmalate dehydrogenase OS=Vibrio parahaem... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
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