CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_PHOLL (3-isopropylmalate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=leuB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.311e-30
Identity = 71/172 (41.28%), Postives = 111/172 (64.53%), Query Frame = -1
Query:  281 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGS 793
            R+A  AF  A+     +V++I KAN++Q +  L+ +   E+A+ YP++    + IDN  M L+K+P+ FDV++  N++GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGK +ANP A +LS+  +LR+ L  +D A+ I+ A+   + +G YRT DL G+
Sbjct:  174 RIARIAFESARKRSN-KVTSIDKANVLQSSV-LWREVVTEIAKAYPDVEINHMYIDNATMQLIKDPSQFDVMLCSNIFGDILSDECAMITGSMGMLPSASLNEKGFGLYEPAGGSAPDIAGKGIANPIAQILSAALLLRYSLGHNDAANAIEQAVNYALEQG-YRTTDLAGN 342          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_DESVH (3-isopropylmalate dehydrogenase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=leuB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.712e-30
Identity = 77/169 (45.56%), Postives = 106/169 (62.72%), Query Frame = -1
Query:  290 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADL 793
            R+A  AF  A+   R RV ++ KAN++  T  L+ +   EVA  YP++    + +DN  M LV+ PA FDV+V  NL+GDI+SD  A + G +G+ PS ++G GG AL E +HGSAPDIAG++ ANP A +LS   MLR    L  +AD I  A+   +AEG YRT D+
Sbjct:  171 RIARVAFDTARARKR-RVCSVDKANVLA-TSRLWREVVEEVARDYPDVELSHMYVDNAAMQLVRWPAQFDVIVTGNLFGDILSDEAAVITGSIGMLPSASMGSGGPALFEPIHGSAPDIAGQDKANPIATILSVGMMLRLGFGLAAEADAIDAAVRRVLAEG-YRTGDI 336          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_NITMU (3-isopropylmalate dehydrogenase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=leuB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.236e-30
Identity = 70/169 (41.42%), Postives = 108/169 (63.91%), Query Frame = -1
Query:  290 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 793
            R+A  AF  A+   R R+ ++ K N+++ T  L+     E A +YP++    +++DN  M LV+NP  FDV+V  N++GDI+SD  + L G +G+ PS ++ E    L E +HGSAPDIAGK++ANP A +LS   MLR+  +  ++A RI+ A+   +A+G YRTAD+
Sbjct:  167 RIARVAFQAARKRSR-RLCSVDKMNVLESTQ-LWRDVVTETAGEYPDVELSHMLVDNAAMQLVRNPRQFDVVVTGNMFGDILSDEASMLTGSIGMLPSASLDERNKGLYEPIHGSAPDIAGKDVANPLATVLSVAMMLRYTFDREEEASRIERAVKKVLADG-YRTADI 332          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_CORGL (3-isopropylmalate dehydrogenase OS=Corynebacterium glutamicum GN=leuB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.920e-30
Identity = 71/175 (40.57%), Postives = 109/175 (62.29%), Query Frame = -1
Query:  317 VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI--ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 835
            +     + TR  + RV  YAF  A++  R++++ +HK N++    GL+ +   EVA++YPE+  +   ID   + LV +P+ FDV+V  NL+GDI++D    + GG+GL  S NI   G   ++ E VHGSAPDIAG+ +A+PTA +LS+  +LRHL   D A RI+ AI + +A
Sbjct:  144 IANETSVNTRYGAERVIRYAFELAQSR-RKKLTLVHKTNVLVHGGGLWQRTVDEVAKEYPEVAVDYNHIDAATIYLVTDPSRFDVIVTDNLFGDILTDEAGAVSGGIGLAASGNIDATGTNPSMFEPVHGSAPDIAGQGIADPTAAILSAAMLLRHLGDEDNAVRIETAIAADVA 317          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BUCDN (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Diuraphis noxia GN=leuB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.920e-30
Identity = 71/190 (37.37%), Postives = 119/190 (62.63%), Query Frame = -1
Query:  239 LRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSST---TSDFTKAICDHL 796
            +R+A  AF  A++  + ++ +I KAN+++ +  L+ +   EV+++YP++    + IDN CM ++K+P  FDVL+  NL+GDIISD CA + G +G+ PS ++ E    L E   GSAPDI GKN+ANP A +LS   ++R+ + L+  A++I NA+++ + +G Y+T D+        T++    I D L
Sbjct:  173 VRIAHLAFKLARSR-KHKLCSIDKANVLESSI-LWREVVEEVSKEYPDVILSHLYIDNVCMQIIKDPNQFDVLLCSNLFGDIISDECAMITGSIGMLPSASLNEKNFGLYEPAGGSAPDIQGKNIANPIAQILSLSMLIRYSMNLNKIANKIDNAVINVLKKG-YKTMDISKDQNYLKTNEMGDVIADFL 359          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_SYNJB (3-isopropylmalate dehydrogenase OS=Synechococcus sp. GN=leuB PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.814e-30
Identity = 74/175 (42.29%), Postives = 109/175 (62.29%), Query Frame = -1
Query:  272 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTT 793
            R+A  AF  A+   R ++ ++ KAN+++ +  L+ +    +A +YPE+    + IDN  M LV+ P  FDV++  NL+GDI+SD  A L G +G+ PS ++G  G  L E VHGSAPDIAG++ ANP A +LS   MLR+ L+    ADRI+ A+ + +A+G YRT DL     T
Sbjct:  179 RIARVAFELARKR-RRKLCSVDKANVLEVSQ-LWRERVNAIAAEYPEVELSHLYIDNAAMQLVRWPKQFDVILTGNLFGDILSDEAAMLTGSIGMLPSASLGSSGPGLYEPVHGSAPDIAGQDKANPIAQVLSGALMLRYSLDQPQAADRIEQAVEAVLAQG-YRTPDLYSEGMT 350          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_CORGB (3-isopropylmalate dehydrogenase OS=Corynebacterium glutamicum (strain R) GN=leuB PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.814e-30
Identity = 70/175 (40.00%), Postives = 109/175 (62.29%), Query Frame = -1
Query:  317 VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI--ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 835
            +     + TR  + RV  YAF  A++  R++++ +HK N++    GL+ +   EVA++YPE+  +   ID   + L+ +P+ FDV+V  NL+GDI++D    + GG+GL  S NI   G   ++ E VHGSAPDIAG+ +A+PTA +LS+  +LRHL   D A RI+ AI + +A
Sbjct:  144 IANETSVNTRYGAERVIRYAFELAQSR-RKKLTLVHKTNVLVHGGGLWQRTVDEVAKEYPEVAVDYNHIDAATIYLITDPSRFDVIVTDNLFGDILTDEAGAVSGGIGLAASGNIDATGTNPSMFEPVHGSAPDIAGQGIADPTAAILSAAMLLRHLGDEDNAVRIETAIAADVA 317          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_SULDN (3-isopropylmalate dehydrogenase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=leuB PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.981e-30
Identity = 74/177 (41.81%), Postives = 113/177 (63.84%), Query Frame = -1
Query:  290 IITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 817
            + TR+  +R+A  AF  A +  + RV +I KAN++  +  L+ +   EVA++YPE+    + +DN  M L+++P  FDV++  N++GDI+SD  + L G +GL PS ++G   I + E +HGSAPDIAG+ +ANP A +LS+  MLR+ L  H  AD+I  A+   + EG YRT DL
Sbjct:  159 VYTREEIVRIAHQAFKIAMSRSK-RVCSIDKANVLDVSQ-LWREVVIEVAKEYPEVELTHMYVDNAAMQLIRDPRQFDVMLTGNIFGDILSDEASMLSGSIGLLPSASVG-AKIGVYEPIHGSAPDIAGQGIANPIATILSASMMLRYALGEHGAADKIDAAVKRALKEG-YRTKDL 331          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_RALME (3-isopropylmalate dehydrogenase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=leuB PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.981e-30
Identity = 71/169 (42.01%), Postives = 109/169 (64.50%), Query Frame = -1
Query:  290 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 793
            R+A  AF  A   G+ ++ ++ KAN+++ T   +     +V+++YP++    + +DN  M LVK P +FDV+V  N++GDI+SD  A L G +G+ PS ++      L E  HGSAPDIAGK +ANP A +LS+  MLR+ L   ++ADRI+NA+   +A+G YRTAD+
Sbjct:  169 RIAHVAFQAAAKRGK-KLCSVDKANVLE-TFQFWKDIVIDVSKEYPDVELSHMYVDNAAMQLVKAPKSFDVIVTGNMFGDILSDEAAMLTGSIGMLPSASLDANNKGLYEPSHGSAPDIAGKGVANPLATILSAAMMLRYSLNRAEQADRIENAVKKVLAQG-YRTADI 334          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_PSEHT (3-isopropylmalate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=leuB PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.981e-30
Identity = 77/190 (40.53%), Postives = 114/190 (60.00%), Query Frame = -1
Query:  251 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADR-IQNAILSTIAEGKYRTADL--GGSSTTSDFTKAI 811
            +R+   R+A +AF  AK      V+++ KAN++  +  L+ +   EV++ YPE+  + + +DN  M LVK P+ FDVL+  NL+GDI+SD CA + G +GL PS ++ + G  L E   GSAPDIAGK +ANP A +LS+  MLR+    D+A R I+ A+   +A G   T D+      TT+D   AI
Sbjct:  168 SRKEIERIARFAFEAAKLRS-SHVTSVDKANVLASSV-LWREVVTEVSKDYPEVKLDYIYVDNAAMQLVKQPSQFDVLLCDNLFGDILSDECAMITGSMGLLPSASLNQSGFGLYEPAGGSAPDIAGKGVANPIAQILSAALMLRYSLGQDEAARTIEKAVAEAVAAG-VGTPDIFPNAGYTTNDVAAAI 354          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
LEU3_PHOLL1.311e-3041.283-isopropylmalate dehydrogenase OS=Photorhabdus lu... [more]
LEU3_DESVH1.712e-3045.563-isopropylmalate dehydrogenase OS=Desulfovibrio v... [more]
LEU3_NITMU2.236e-3041.423-isopropylmalate dehydrogenase OS=Nitrosospira mu... [more]
LEU3_CORGL2.920e-3040.573-isopropylmalate dehydrogenase OS=Corynebacterium... [more]
LEU3_BUCDN2.920e-3037.373-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_SYNJB3.814e-3042.293-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_CORGB3.814e-3040.003-isopropylmalate dehydrogenase OS=Corynebacterium... [more]
LEU3_SULDN4.981e-3041.813-isopropylmalate dehydrogenase OS=Sulfurimonas de... [more]
LEU3_RALME4.981e-3042.013-isopropylmalate dehydrogenase OS=Ralstonia metal... [more]
LEU3_PSEHT4.981e-3040.533-isopropylmalate dehydrogenase OS=Pseudoalteromon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
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