CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_STAS1 (3-isopropylmalate dehydrogenase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=leuB PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.506e-30
Identity = 73/192 (38.02%), Postives = 114/192 (59.38%), Query Frame = -1
Query:  239 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDK-ADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 811
            TR    R+A   F  A+    ++++++ K N++  +  L+     EV++ YP++    +++D C M L+ NP+ FDV+V  NL+GDI+SD  + + G LGL+PS +  E G  L E +HGSAPDIA +++ANP  +LLS    LR     DK AD+++N I   I EGK  T DL G+  TS+    + ++L
Sbjct:  158 TRDEIERIARVGFELAQKR-HKKLTSVDKENVLSSSK-LWRNVINEVSQSYPDVEVNHLLVDACAMHLITNPSQFDVIVTENLFGDILSDEASVIPGSLGLSPSASFSEQGPRLYEPIHGSAPDIANQDIANPFGMLLSVAMCLRESLNEDKAADKLENVIYQLIKEGK-TTRDLNGNYLTSEIFNYVKENL 346          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_SALTI (3-isopropylmalate dehydrogenase OS=Salmonella typhi GN=leuB PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.506e-30
Identity = 75/179 (41.90%), Postives = 114/179 (63.69%), Query Frame = -1
Query:  266 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 793
            R+A  AF  A+   R +V++I KAN++Q +  L+ +   +VA+ YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS   +LR+ L+  + A  I+ AI   + EG  RT+DL  G ++ ++D
Sbjct:  174 RIARIAFESARKR-RRKVTSIDKANVLQSSI-LWREIVNDVAKAYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQEFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADEAATAIEQAINRALEEG-VRTSDLARGAAAVSTD 349          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_CORA7 (3-isopropylmalate dehydrogenase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=leuB PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.506e-30
Identity = 72/180 (40.00%), Postives = 111/180 (61.67%), Query Frame = -1
Query:  287 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI--ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA---EGKYRTADLG 811
            TR    RV   AF  A    R+ V+ +HK N++    GL+ +   EVA+++PE+T +   ID   + +V +PA +DV+V  NL+GDI++DL   + GG+GL  S NI   G   ++ E VHGSAPDIAGK +A+PTA +LS+  +LRHL   + A RI+ A+ + ++   + + RT ++G
Sbjct:  152 TRFGVERVVRDAFQRAMGR-RKHVTLVHKTNVLVNAGGLWQRTVNEVAQEFPEVTVDYNHIDAATIYMVTDPARYDVIVTDNLFGDILTDLAGAVTGGIGLAASGNIDASGANPSMFEPVHGSAPDIAGKGIADPTAAILSAAMLLRHLGDEENAVRIEEAVAADVSARGDAQARTTEIG 330          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_WOLSU (3-isopropylmalate dehydrogenase OS=Wolinella succinogenes GN=leuB PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.497e-30
Identity = 75/169 (44.38%), Postives = 108/169 (63.91%), Query Frame = -1
Query:  290 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 793
            R+A  AF  A    ++RV ++ KAN++  +  L+ +    +A++YPE+    + IDN  M L++NP  FDV++  NL+GDI+SD  + L G +GL PS +IG G  AL E +HGSAPDIAG+ +ANP A + S+  MLRH L   + AD I  AI+ T+ EG YRT D+
Sbjct:  167 RIAHVAFKAAMRR-QKRVCSVDKANVLDVSQ-LWRETVTRIAKEYPEVELSHMYIDNAAMQLIRNPKQFDVILTGNLFGDILSDEASMLSGSIGLLPSASIG-GKAALYEPIHGSAPDIAGQGIANPIATIASASMMLRHSLGEVEAADAIDKAIVKTLKEG-YRTKDI 331          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_NITOC (3-isopropylmalate dehydrogenase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=leuB PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.497e-30
Identity = 73/184 (39.67%), Postives = 114/184 (61.96%), Query Frame = -1
Query:  245 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 793
            R+A+ AF  A    R RV ++ KAN+++ T+ L+ +   EVA ++PE+    + +DN  M LV+ P  FDV+V  N++GDI+SD  A L G +G+ PS ++ + G  + E +HGSAPDIAG+ +ANP A +LS   MLR+ L+   +A R++ A+ + + +G  RT D+    TT   T A+ D
Sbjct:  171 RIAQVAFTIAMKRDR-RVCSVDKANVLEATE-LWREVMSEVAAEFPEVELSHMYVDNAAMQLVRAPKQFDVVVTTNMFGDILSDCAAMLTGSIGMLPSASLDQSGRGMYEPIHGSAPDIAGQGIANPLATILSVAMMLRYSLDSPAQATRLEKAVGAVLDQG-LRTPDIYSPGTTQVSTGAMGD 351          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BUCUS (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Uroleucon solidaginis GN=leuB PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.497e-30
Identity = 70/173 (40.46%), Postives = 110/173 (63.58%), Query Frame = -1
Query:  278 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSS 793
            R+A  AF  AKT    +V +I K+N++  +  L+ +  ++V++ YP++    + IDN  M ++KNP  FD+L+  NL+GDIISD CA + G +G+ PS ++ E    L E   GSAPDI GKN+ANP A +LS   ++R+ + L   AD+I  +++S + +G YRTAD+  +S
Sbjct:  174 RIAHLAFQLAKTRNY-KVCSIDKSNVLNSSI-LWREIVQKVSKNYPDVHLSHLYIDNATMQIIKNPNQFDILLCSNLFGDIISDECAMITGSIGMLPSASLNEKKFGLYEPAGGSAPDIEGKNIANPIAQILSVSMLVRYSMNLKTIADKIDQSVISVLKKG-YRTADISNNS 343          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BORPA (3-isopropylmalate dehydrogenase OS=Bordetella parapertussis GN=leuB PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 8.497e-30
Identity = 72/184 (39.13%), Postives = 111/184 (60.33%), Query Frame = -1
Query:  245 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 793
            R+A   F  A+   + ++ ++ KAN+++ T   +     EV+  YP++    + +DN  M LV+NP  FDV+V  NL+GDI+SD  A L G +G+ PS ++   G  L E  HGSAPDIAG+ +ANP A +LS+  +LR+ L L  +ADR++ A+   +A+G  RTAD+  + TT   T  + D
Sbjct:  171 RIARIGFESARKRNK-KLCSVDKANVLE-TSQFWRDLVIEVSRDYPDVELSHMYVDNAAMQLVRNPRQFDVIVTGNLFGDILSDEAAMLTGSIGMLPSASLNAAGQGLYEPSHGSAPDIAGQGIANPLATILSAAMLLRYSLNLAPQADRVEAAVRKVLADG-LRTADIHEAGTTKVSTSQMGD 351          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU32_BORBR (3-isopropylmalate dehydrogenase 2 OS=Bordetella bronchiseptica GN=leuB2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.497e-30
Identity = 72/184 (39.13%), Postives = 111/184 (60.33%), Query Frame = -1
Query:  245 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 793
            R+A   F  A+   + ++ ++ KAN+++ T   +     EV+  YP++    + +DN  M LV+NP  FDV+V  NL+GDI+SD  A L G +G+ PS ++   G  L E  HGSAPDIAG+ +ANP A +LS+  +LR+ L L  +ADR++ A+   +A+G  RTAD+  + TT   T  + D
Sbjct:  171 RIARIGFESARKRNK-KLCSVDKANVLE-TSQFWRDLVIEVSRDYPDVELSHMYVDNAAMQLVRNPRQFDVIVTGNLFGDILSDEAAMLTGSIGMLPSASLNAAGQGLYEPSHGSAPDIAGQGIANPLATILSAAMLLRYSLNLAPQADRVEAAVRKVLADG-LRTADIHEAGTTKVSTSQMGD 351          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_PHOPR (3-isopropylmalate dehydrogenase OS=Photobacterium profundum GN=leuB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.110e-29
Identity = 72/170 (42.35%), Postives = 103/170 (60.59%), Query Frame = -1
Query:  284 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGG 793
            R+A  AF  A     + V +I KAN++Q +  L+ +   EVA+ YPE+T   + IDN  M L+K+P+ FDV++  N++GDIISD CA + G +G+ PS ++ +    + E   GSAPDIAGKN+ANP A +LS+  MLR+    +KA R     +S   E    TADL G
Sbjct:  174 RIARIAFESAMLR-EKNVYSIDKANVLQSSI-LWREVVEEVAKDYPEVTLNHMYIDNATMQLIKDPSQFDVMLCSNIFGDIISDECAMITGSMGMLPSASLNQEKFGMYEPAGGSAPDIAGKNIANPVAQILSAALMLRYSLDEEKAARAIEQAVSQALEAGELTADLAG 341          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_PELCD (3-isopropylmalate dehydrogenase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=leuB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.110e-29
Identity = 72/169 (42.60%), Postives = 104/169 (61.54%), Query Frame = -1
Query:  290 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 793
            R+   AF  A+  G++ VS I KAN++  T  L+ +    V+  YP++    + +DN  M LVK P  FDVL+ PN++GDI+SD  A L G LG+ PS ++ EG   + E   GSAPDIAGKN+ANP A +LS+  +LR+   L D AD ++ A+ + +A G  RT D+
Sbjct:  174 RITRVAFDAARKRGKKLVS-IDKANVLS-TSVLWREVVERVSADYPDVVLSHMYVDNAAMQLVKAPKQFDVLLCPNMFGDILSDEAAMLTGSLGMLPSASLAEGSFGMYEPAGGSAPDIAGKNIANPVAQILSAAMLLRYSCGLADAADAVEKAVENCLAAG-LRTGDI 339          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
LEU3_STAS16.506e-3038.023-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_SALTI6.506e-3041.903-isopropylmalate dehydrogenase OS=Salmonella typh... [more]
LEU3_CORA76.506e-3040.003-isopropylmalate dehydrogenase OS=Corynebacterium... [more]
LEU3_WOLSU8.497e-3044.383-isopropylmalate dehydrogenase OS=Wolinella succi... [more]
LEU3_NITOC8.497e-3039.673-isopropylmalate dehydrogenase OS=Nitrosococcus o... [more]
LEU3_BUCUS8.497e-3040.463-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_BORPA8.497e-3039.133-isopropylmalate dehydrogenase OS=Bordetella para... [more]
LEU32_BORBR8.497e-3039.133-isopropylmalate dehydrogenase 2 OS=Bordetella br... [more]
LEU3_PHOPR1.110e-2942.353-isopropylmalate dehydrogenase OS=Photobacterium ... [more]
LEU3_PELCD1.110e-2942.603-isopropylmalate dehydrogenase OS=Pelobacter carb... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
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