CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BORA1 (3-isopropylmalate dehydrogenase OS=Bordetella avium (strain 197N) GN=leuB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.110e-29
Identity = 73/184 (39.67%), Postives = 111/184 (60.33%), Query Frame = -1
Query:  245 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 793
            R+A   F  A+   + ++ ++ KAN+++ T   +     EVA +YP++    + +DN  M LV+NP  FDV+V  NL+GDI+SD  A L G +G+ PS ++   G  L E  HGSAPDIAG+ +ANP A +LS+  +LR+ L    +ADRI+ A+   +A+G  RTAD+  + TT   T  + D
Sbjct:  171 RIAHVGFETARKRNK-KLCSVDKANVLE-TSQFWRDIVIEVAREYPDVELSHMYVDNAAMQLVRNPRQFDVIVTGNLFGDILSDEAAMLTGSIGMLPSASLNASGQGLYEPSHGSAPDIAGQGIANPLATILSAAMLLRYSLNQPAQADRIEAAVRKVLAQG-LRTADIHEAGTTKVSTSQMGD 351          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_THIDA (3-isopropylmalate dehydrogenase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=leuB PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.449e-29
Identity = 72/174 (41.38%), Postives = 107/174 (61.49%), Query Frame = -1
Query:  275 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELH-DKADRIQNAILSTIAEGKYRTADLGGSST 793
            RVA  AF  A   G+ ++ ++ KAN+++ ++ L+ +   EVA+ YPE+    + +DN  M L++ P  FD +V  N++GDI+SD  + L G +G+ PS ++ E    + E +HGSAPDIAGKNLANP A +LS   M R+       ADRI+NA+   IA+G YRT D+    T
Sbjct:  167 RVAHVAFGIAMKRGK-KLCSVEKANVLECSE-LWKEIMIEVAKDYPEVELSHMYVDNAAMQLIRAPKQFDTIVTGNIFGDILSDAASMLSGSIGMLPSASLDEHNKGMYEPIHGSAPDIAGKNLANPLATILSVAMMYRYTFADLATADRIENAVKQVIAKG-YRTGDIWTEGT 337          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_STRCO (3-isopropylmalate dehydrogenase OS=Streptomyces coelicolor GN=leuB PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.449e-29
Identity = 74/190 (38.95%), Postives = 112/190 (58.95%), Query Frame = -1
Query:  272 VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGG--IALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTT 835
            V   + + T     RV   AF  A+   R++++ +HK N++     L+     +VA +YPE+T + + +D   + LV +PA FDV+V  NL+GDII+DL A + GG+G+  S NI   G   ++ E VHGSAPDIAG+  A+PTA +LS   +LRHL   D+A RI++A+ + + E      DL   ST+
Sbjct:  150 VATEVSVNTAYGVERVVRDAFARAQARPRKKLTLVHKNNVLTFAGHLWTNIFNKVAAEYPEVTTDYLHVDAATIFLVTDPARFDVIVTDNLFGDIITDLAAAVSGGIGVAASGNINPSGDFPSMFEPVHGSAPDIAGQGKADPTATVLSVALLLRHLGYEDEAARIEDAVSADLGE----RGDLPARSTS 335          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_RALEJ (3-isopropylmalate dehydrogenase OS=Ralstonia eutropha (strain JMP134) GN=leuB PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.449e-29
Identity = 70/169 (41.42%), Postives = 108/169 (63.91%), Query Frame = -1
Query:  290 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 793
            R+A  AF  A   G+ ++ ++ KAN+++ T   +     +V+++YP++    + +DN  M LVK P +FDV+V  N++GDI+SD  A L G +G+ PS ++      L E  HGSAPDIAGK +ANP A +LS+  MLR+ L   ++ADRI+NA+   +A+G YRT D+
Sbjct:  169 RIAHVAFQAAAKRGK-KLCSVDKANVLE-TFQFWKDIVIDVSKEYPDVELSHMYVDNAAMQLVKAPKSFDVIVTGNMFGDILSDEAAMLTGSIGMLPSASLDANNKGLYEPSHGSAPDIAGKGVANPLATILSAAMMLRYSLNKAEQADRIENAVKKVLAQG-YRTGDI 334          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BLOPB (3-isopropylmalate dehydrogenase OS=Blochmannia pennsylvanicus (strain BPEN) GN=leuB PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.449e-29
Identity = 75/184 (40.76%), Postives = 110/184 (59.78%), Query Frame = -1
Query:  245 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 793
            R+A  AF  A+   R+RVS+I KAN++  T  L+ +    +A+ YP++  E + IDN  M L+ NP+ FD+++ PNL+GDI+SD CA + G +G+ PS +I E    L E   GSAPDIA KN+ANP A +LS   + R+ L+L   A +I+ A+   +  G YRT D+      S  T  + D
Sbjct:  174 RIANIAFKLAQKR-RKRVSSIDKANVLH-TSMLWREVVSHLAKNYPDVELEHLYIDNASMQLINNPSKFDIILCPNLFGDILSDECAMISGSIGMLPSASINEHNFGLYEPAGGSAPDIAEKNIANPIAHILSIALLFRYSLKLDHIAIKIEKAVSQALMLG-YRTIDIAKKHEKSISTNEMGD 354          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_THIFE (3-isopropylmalate dehydrogenase OS=Thiobacillus ferrooxidans GN=leuB PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.893e-29
Identity = 74/182 (40.66%), Postives = 113/182 (62.09%), Query Frame = -1
Query:  251 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 793
            R+A  AF  A+   R+++ ++ KAN+++ T  L+ +   EVA  YP++    + +DN  M L++ PA FDVL+  N++GDI+SD  + L G +G+ PS ++GEG  A+ E +HGSAPDIAG++ ANP A +LS   MLRH L     A R++ A+   + +G  RTAD+    T    TKA+
Sbjct:  169 RIAHVAFRAAQGR-RKQLCSVDKANVLETTR-LWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLGEGR-AMYEPIHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEAAVQRVLDQG-LRTADIAAPGTPVIGTKAM 346          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_RHOE4 (3-isopropylmalate dehydrogenase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=leuB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.893e-29
Identity = 72/194 (37.11%), Postives = 110/194 (56.70%), Query Frame = -1
Query:  269 VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI--ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI---LSTIAEGKYRTADLGGSSTTS 835
            +   + I T   + RV  YAF  A+T  +  ++ IHK N++     ++ +    V  +YP++      ID   + +V +P+ FDV+V  NL+GDII+DL   + GG+GL  S NI   G   ++ E VHGSAPDIAGK +A+PTA +LS+  +LRHL   D A R++  +   L+T  EG   T ++G   T +
Sbjct:  144 IATEVSINTWFGAERVVRYAFALAQTRSKH-LTLIHKTNVLSNAGAIWTRAIETVGAEYPDVETAYCHIDAATIYMVTDPSRFDVIVTDNLFGDIITDLAGAVTGGIGLAASGNIDASGTNPSMFEPVHGSAPDIAGKGIADPTAAILSAALLLRHLGREDDAARVEAVVAADLATRGEGPISTTEIGDRITAA 336          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_HAHCH (3-isopropylmalate dehydrogenase OS=Hahella chejuensis (strain KCTC 2396) GN=leuB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.893e-29
Identity = 72/182 (39.56%), Postives = 112/182 (61.54%), Query Frame = -1
Query:  251 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 793
            R+   AF  A+   + R+ ++ KAN+++ T  L+ +   E+A++YP++    + +DN  M LV+ P  FDV+V  N++GDI+SD  A L G +G+ PS ++   G  + E  HGSAPDIAG+N+ANP A +LS+  MLR+ L   D A  I+ A+   + +G  RT D+ GSS  S  T+A+
Sbjct:  171 RIGRVAFEAAQKRNK-RLCSVDKANVLEVTV-LWREVMDELAKEYPDVELSHMYVDNAAMQLVRAPKQFDVIVTGNMFGDILSDEAAMLTGSIGMLPSASLNAAGKGMYEPCHGSAPDIAGQNMANPLATILSAAMMLRYSLAAEDAAAAIEQAVSDVLDQG-LRTRDIAGSSGESVSTQAM 349          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BACLD (3-isopropylmalate dehydrogenase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=leuB PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.893e-29
Identity = 72/182 (39.56%), Postives = 113/182 (62.09%), Query Frame = -1
Query:  260 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSS---TTSDFT 793
            RV   AF  A++  + +V+++ KAN+++ +  L+ K   EVA+++P++  E +++DN  M L+  P  FD++V  N++GDI+SD  + L G LG+ PS ++   G+ L E VHGSAPDIAG+N+ANP A +LS+  MLR    L  +A  +++A+   +  GK RT DL   S   TT   T
Sbjct:  171 RVIREAFQMAQSR-KGKVTSVDKANVLESSK-LWRKTAEEVAKEFPDVKLEHMLVDNAAMQLIYAPGQFDIIVTENMFGDILSDEASMLTGSLGMLPSASLSSSGLHLYEPVHGSAPDIAGQNIANPLAAILSAAMMLRTSFGLEAEAQAVEHAVDQVLRAGK-RTKDLAKGSEHCTTQSIT 349          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_SYNJA (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain JA-3-3Ab) GN=leuB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.472e-29
Identity = 70/175 (40.00%), Postives = 110/175 (62.86%), Query Frame = -1
Query:  272 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTT 793
            R+A  AF  A+   R ++ ++ KAN+++ +  L+ +    +A +YP++    + +DN  M LV+ P  FDV++  NL+GDI+SD  A L G +G+ PS ++G  G  + E VHGSAPDIAG++ ANP A +LS   +LR+ L+    ADRI+ A+ + +A+G YRTAD+     T
Sbjct:  179 RIARVAFELARKR-RRKLCSVDKANVLEVSQ-LWRERVTAIAAEYPDVELSHLYVDNAAMQLVRWPKQFDVILTENLFGDILSDEAAMLTGSIGMLPSASLGSSGPGVYEPVHGSAPDIAGQDKANPIAQVLSGAMLLRYSLDQPQAADRIEQAVEAVLAQG-YRTADIYSEGMT 350          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
LEU3_BORA11.110e-2939.673-isopropylmalate dehydrogenase OS=Bordetella aviu... [more]
LEU3_THIDA1.449e-2941.383-isopropylmalate dehydrogenase OS=Thiobacillus de... [more]
LEU3_STRCO1.449e-2938.953-isopropylmalate dehydrogenase OS=Streptomyces co... [more]
LEU3_RALEJ1.449e-2941.423-isopropylmalate dehydrogenase OS=Ralstonia eutro... [more]
LEU3_BLOPB1.449e-2940.763-isopropylmalate dehydrogenase OS=Blochmannia pen... [more]
LEU3_THIFE1.893e-2940.663-isopropylmalate dehydrogenase OS=Thiobacillus fe... [more]
LEU3_RHOE41.893e-2937.113-isopropylmalate dehydrogenase OS=Rhodococcus ery... [more]
LEU3_HAHCH1.893e-2939.563-isopropylmalate dehydrogenase OS=Hahella chejuen... [more]
LEU3_BACLD1.893e-2939.563-isopropylmalate dehydrogenase OS=Bacillus lichen... [more]
LEU3_SYNJA2.472e-2940.003-isopropylmalate dehydrogenase OS=Synechococcus s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
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