CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_STRMU (3-isopropylmalate dehydrogenase OS=Streptococcus mutans GN=leuB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.472e-29
Identity = 75/186 (40.32%), Postives = 115/186 (61.83%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 793
            R+   AF  A+   + +V++I K N++  T  L+ +   EVA++Y ++T E  ++D+  M+++ NPA FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAGK +ANP +++LS   MLR        A+ I++A+  T+ +G   T DLGG + T   T AI  +L
Sbjct:  162 RIMRKAFAIARGRSK-KVTSIDKQNVLA-TSKLWRQIAEEVAKEYSDVTLEHQLVDSAAMVMITNPACFDVVVTENLFGDILSDESSVLPGTLGVMPSASHSESGPSLYEPIHGSAPDIAGKGIANPISMILSVAMMLRDSFGETAGAEMIEHAVNKTLTQG-ILTRDLGGLANTKQMTAAIIANL 344          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_PROMA (3-isopropylmalate dehydrogenase OS=Prochlorococcus marinus GN=leuB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.472e-29
Identity = 74/169 (43.79%), Postives = 109/169 (64.50%), Query Frame = -1
Query:  290 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADL 793
            R+A+ AF  ++T  R+++ +I KAN+++ +  L+ +   +  E+YP I      +DN  M LV+ PA FDV++  NL+GDIISD  A L G +G+ PS ++GE G  + E VHGSAPDIA KNLANP A++LS+  MLR  L  +  A  ++NAI   + +G +RT DL
Sbjct:  172 RIAKIAFDLSETR-RKKICSIDKANVLEVSQ-LWRERVIKAQEQYPNIELTHQYVDNAAMQLVREPAQFDVILTSNLFGDIISDEAAMLTGSIGMLPSASLGEDGPGVFEPVHGSAPDIAHKNLANPIAMILSTAMMLRTGLMEYKAATDLENAIDKVLGKG-FRTIDL 337          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_PELLD (3-isopropylmalate dehydrogenase OS=Pelodictyon luteolum (strain DSM 273) GN=leuB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.472e-29
Identity = 75/190 (39.47%), Postives = 112/190 (58.95%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGG----SSTTSDFTKAICDHL 793
            R+A  AF  A+  G +RV +I KAN+++ +   +      V   +P++   ++ +DN  M +V+NP  FDV+V  NL+GDI+SD+   + G LG+ PS +IG    AL E +HGSAPDIAGKN+ANP A + S   M  H   + D ++ I  AI   ++EG  RTAD+      S +T++ T+ I  HL
Sbjct:  165 RIARLAFEAAQKRGSKRVMSIDKANVLEVSQ-FWRNEVHRVHRDFPDVELSDMYVDNAAMQIVRNPKQFDVIVTGNLFGDILSDIAGMITGSLGMLPSASIGRVH-ALYEPIHGSAPDIAGKNIANPIATIASVAMMFEHSFCMADISNEIHAAIEGALSEG-LRTADIAAPGQKSVSTTEMTEGIIRHL 351          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_COREF (3-isopropylmalate dehydrogenase OS=Corynebacterium efficiens GN=leuB PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.472e-29
Identity = 74/181 (40.88%), Postives = 107/181 (59.12%), Query Frame = -1
Query:  287 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI--ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA----EGKYRTADLG 811
            TR  + RV  YAF  A++  R  ++ +HK N++    GL+ +   EVA +YPE+T +   ID   + LV +P+ FDV+V  NL+GDI++D    + GG+GL  S NI   G   ++ E VHGSAPDI GK +A+PTA +LS+  MLRHL     A RI+ A+   +A    E    T ++G
Sbjct:  152 TRYGAERVIRYAFELAQSR-RRHLTLVHKTNVLVHGGGLWQRTVDEVAREYPEVTVDYNHIDAATIYLVTDPSRFDVIVTDNLFGDILTDEAGAISGGIGLAASGNIDATGTNPSMFEPVHGSAPDIMGKGIADPTAAILSAAMMLRHLGDEANAVRIEEAVARDVAGRDPEAPISTTEVG 331          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_CORDI (3-isopropylmalate dehydrogenase OS=Corynebacterium diphtheriae GN=leuB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.472e-29
Identity = 69/180 (38.33%), Postives = 110/180 (61.11%), Query Frame = -1
Query:  287 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI--ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAE---GKYRTADLG 811
            TR    RV   AF  A+   ++ ++ +HK N++    GL+ +   E+A +YPE+T +   ID   + +V +P+ +DV+V  NL+GDI++DL   + GG+GL  S NI   G+  ++ E VHGSAPDIAG+ +A+PTA +LS+  +LRH+     A RI+ A+   +AE   G  +T ++G
Sbjct:  152 TRYGVERVVRDAFERAQNR-KKHLTLVHKTNVLVNAGGLWQRTVNEIATEYPEVTVDYNHIDAATIYMVTDPSRYDVIVTDNLFGDILTDLAGAVTGGIGLAASGNIDATGVNPSMFEPVHGSAPDIAGQGIADPTAAILSAAMLLRHVGDESNAQRIEAAVTYDVAERPAGPVKTVEVG 330          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_CHRVO (3-isopropylmalate dehydrogenase OS=Chromobacterium violaceum GN=leuB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.472e-29
Identity = 69/169 (40.83%), Postives = 108/169 (63.91%), Query Frame = -1
Query:  290 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 793
            R+A  AF  A    R ++ ++ KAN+++ T+  + +   EVA++YP++    + +DN  M LV+NP  FDV+V  N++GDI+SD  + L G +G+ PS ++ +    L E  HGSAPDIAG+NLANP A +LS+  MLR+       A R+++A+   +A+G YRTAD+
Sbjct:  168 RIAHVAFGIAMKRNR-KLCSVDKANVLETTE-FWKEIMIEVAKEYPQVELSHMYVDNAAMQLVRNPKQFDVMVTGNIFGDILSDEASMLTGSIGMLPSASLDQNNKGLYEPSHGSAPDIAGQNLANPLATILSAAMMLRYSFGQEAAARRVEDAVKKVLAQG-YRTADI 333          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BUCRP (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Rhopalosiphum padi GN=leuB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.472e-29
Identity = 69/169 (40.83%), Postives = 106/169 (62.72%), Query Frame = -1
Query:  290 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 793
            R+A  AF  A +  R +V +I K+N++  +  L+ +   EV++ YP I    + IDN CM ++KNP+ FDVL+  N++GDIISD CA + G +G+ PS ++      L E   GSAPDI GKN+ANP A +LS   ++RH + L++ AD+I +++   +  G YRT D+
Sbjct:  174 RIAHLAFELASSR-RCKVCSIDKSNVLASSI-LWREIVEEVSKNYPNIILSHLYIDNACMQIIKNPSQFDVLLCSNIFGDIISDECAMITGSIGMLPSASLNSKKFGLYEPAGGSAPDIEGKNIANPIAQILSLSMLIRHSMNLNEIADKIDSSVYRALKAG-YRTLDI 339          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_RALSO (3-isopropylmalate dehydrogenase OS=Ralstonia solanacearum GN=leuB PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.229e-29
Identity = 71/169 (42.01%), Postives = 106/169 (62.72%), Query Frame = -1
Query:  290 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 793
            R+A  AF  A   G+ ++ ++ KAN+++ T   +     +V ++YPE+    + +DN  M LVK P  FDV+V  N++GDI+SD  A L G +G+ PS ++      L E  HGSAPDIAGK +ANP A +LS+  MLR+ L   ++ADRI+NA+   +A+G YRT D+
Sbjct:  170 RIAHVAFQAAAKRGK-KLCSVDKANVLE-TFQFWKDIVTDVHKEYPEVELSHMYVDNAAMQLVKAPKNFDVVVTGNMFGDILSDEAAMLTGSIGMLPSASLDANNKGLYEPSHGSAPDIAGKGIANPLATILSAAMMLRYTLGKAEQADRIENAVKKVLAQG-YRTGDI 335          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BUCAI (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=leuB PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.229e-29
Identity = 68/170 (40.00%), Postives = 110/170 (64.71%), Query Frame = -1
Query:  290 LRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 796
            +R+A  AF  A++  +++V +I K+N++Q +  L+ +    V++KYP++    + IDN  M ++K+P  FDVL+  NL+GDIISD CA + G +G+ PS +  E    L E   GSAPDI GKN+ANP A +LS   ++R+ + L+  AD+I  A+ + + +G YRT+D+
Sbjct:  173 IRIAHLAFKLARSR-KKKVCSIDKSNVLQSSI-LWREVVESVSKKYPDVHLSHLYIDNAAMQIIKDPNQFDVLLCSNLFGDIISDECATITGSIGMLPSASFNEKNFGLYEPAGGSAPDIEGKNIANPIAQILSLSMLVRYGMNLNQIADKIDKAVNNVLKKG-YRTSDI 339          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_OCEIH (3-isopropylmalate dehydrogenase OS=Oceanobacillus iheyensis GN=leuB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.217e-29
Identity = 74/205 (36.10%), Postives = 124/205 (60.49%), Query Frame = -1
Query:  239 GVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL----GGSSTTSDFTKAICDHL 838
            GVV++L+  +R+   R+ E  F  A+   ++ ++++ KAN+++ +  L+ +   E ++ YP++    +++D   M LV  P+ FDV+V  NL+GDI+SD  + L G LG+ PS ++   G+ L E VHGSAPDIAGK +ANP A++LS+  ML H   L D+A  I+ A+   + +G + TAD+    G    T   T A+ +++
Sbjct:  152 GVVDTLQY-SREEIERIVERGFEAARIR-KKHLTSVDKANVLESSK-LWREIVEEKSKDYPDVAVNHLLVDAAAMKLVTQPSFFDVIVTENLFGDILSDEASVLTGSLGMLPSASLRADGLGLYEPVHGSAPDIAGKGIANPLAMILSAALMLEHSFGLVDEAKEIERAVNDCLLQG-FHTADIHIPGGVQVGTKQMTDAVLENV 352          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
LEU3_STRMU2.472e-2940.323-isopropylmalate dehydrogenase OS=Streptococcus m... [more]
LEU3_PROMA2.472e-2943.793-isopropylmalate dehydrogenase OS=Prochlorococcus... [more]
LEU3_PELLD2.472e-2939.473-isopropylmalate dehydrogenase OS=Pelodictyon lut... [more]
LEU3_COREF2.472e-2940.883-isopropylmalate dehydrogenase OS=Corynebacterium... [more]
LEU3_CORDI2.472e-2938.333-isopropylmalate dehydrogenase OS=Corynebacterium... [more]
LEU3_CHRVO2.472e-2940.833-isopropylmalate dehydrogenase OS=Chromobacterium... [more]
LEU3_BUCRP2.472e-2940.833-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_RALSO3.229e-2942.013-isopropylmalate dehydrogenase OS=Ralstonia solan... [more]
LEU3_BUCAI3.229e-2940.003-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_OCEIH4.217e-2936.103-isopropylmalate dehydrogenase OS=Oceanobacillus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
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