CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_RHOOB (3-isopropylmalate dehydrogenase OS=Rhodococcus opacus (strain B4) GN=leuB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.602e-28
Identity = 71/188 (37.77%), Postives = 111/188 (59.04%), Query Frame = -1
Query:  287 VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI--ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI---LSTIAEGKYRTADLG 835
            +   + I T   + RV  YAF  A+T  R+ V+ IHK N++     ++ +    V+ +YP++      ID   + +V +P+ FDV+V  NL+GDII+DL   + GG+GL  S NI   G   ++ E VHGSAPDIAG+ +A+PTA +LS+  +LRHL     A RI+ A+   L++  + K  T+++G
Sbjct:  143 IATEVSINTWFGAERVVRYAFALAQTR-RKHVTLIHKTNVLSNAGAIWTRAVETVSAEYPDVETAYCHIDAATIYMVTDPSRFDVIVTDNLFGDIITDLAGAVTGGIGLAASGNIDASGTNPSMFEPVHGSAPDIAGQGIADPTAAILSAALLLRHLGRDGDAARIETAVEADLASRGDSKVVTSEVG 329          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_STAHJ (3-isopropylmalate dehydrogenase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=leuB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.093e-28
Identity = 69/183 (37.70%), Postives = 107/183 (58.47%), Query Frame = -1
Query:  266 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSD 811
            T++   R+A  AF  A    +++++++ K N++  T  L+ K   E++ ++P++    +++D C M L+  P  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIA +NLANP  ++LS    LR      D A  ++ A+   I +GK  T DL G  TTSD
Sbjct:  158 TKKEIERIAMVAFELASQR-KKKLTSVDKENVLA-TSKLWRKTINEISHEFPDVKVNHLLVDACSMQLISQPTNFDVIVTENLFGDILSDEASTIPGSLGLSPSASFSLEGPRLYEPIHGSAPDIANQNLANPFGMILSLAMCLRESFNFEDAASELEQAVYQLIKDGK-TTKDLNGHYTTSD 337          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_MOOTA (3-isopropylmalate dehydrogenase OS=Moorella thermoacetica (strain ATCC 39073) GN=leuB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.093e-28
Identity = 72/175 (41.14%), Postives = 108/175 (61.71%), Query Frame = -1
Query:  290 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 811
            TR    R+   AF  A+   R  ++++ KAN++  T  L+     ++  ++PE+T E + +DNC M LV+ PA FDV+V  N +GDI+SD  + L G +G+ PS +IG G +AL E  HGSAPDIAG+  ANP A +LS+  ML++  ++   A  I+ A+   +A+G YRT DL
Sbjct:  163 TRAEIERIVRLAFTIARQR-RCHLTSVDKANVLT-TSRLWRDTVEDIKGEFPEVTVEHMYVDNCAMQLVRRPAQFDVIVTENTFGDILSDQASVLTGSIGMLPSASIG-GAVALYEPCHGSAPDIAGQQKANPLATILSAAMMLKYSFKMDQAAAAIEAAVGRVLAKG-YRTPDL 333          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_GLOVI (3-isopropylmalate dehydrogenase OS=Gloeobacter violaceus GN=leuB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.093e-28
Identity = 65/168 (38.69%), Postives = 101/168 (60.12%), Query Frame = -1
Query:  290 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADL 793
            R+   AF  A+   R ++ ++ KAN+++ +  L+ +    +A +YP++    + +DNC M LV+ P  FD +V  N++GDI+SD  A L G +G+ PS ++G GG  L E VHGSAPDIAG++ ANP A +LS   +LRH     +A +     + T+ E  YRT D+
Sbjct:  173 RIGRVAFEAARER-RGKLCSVDKANVLEVSQ-LWREVLVGLAPEYPDVELTHMYVDNCAMQLVRRPRQFDTIVTENMFGDILSDEAAMLTGSIGMLPSASLGSGGPGLYEPVHGSAPDIAGQDKANPLAQVLSGAMLLRHSLRQPEAAQAVERAVQTVLEQGYRTGDI 338          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BUCUA (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Uroleucon aeneum GN=leuB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.093e-28
Identity = 70/180 (38.89%), Postives = 113/180 (62.78%), Query Frame = -1
Query:  257 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTK 793
            R+A  AF  ++T    +V +I K+N++  +  L+ +  ++V++ YP++    + IDN  M ++K+P  FDVL+  NL+GDIISD CA + G +G+ PS ++ E    L E   GSAPDI GKN+ANP A +LS   ++R+ + L   AD+I  +++S + +G YRTAD+   S  +D+ K
Sbjct:  174 RIAHLAFQLSQTRNY-KVCSIDKSNVLNSSI-LWREIVKKVSKHYPDVHLSHLYIDNATMQIIKDPNQFDVLLCSNLFGDIISDECAMITGSIGMLPSASLNEKKFGLYEPAGGSAPDIEGKNIANPIAQILSLSMLVRYSMNLKKIADKIDQSVISVLKKG-YRTADI---SNNNDYLK 347          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BACSU (3-isopropylmalate dehydrogenase OS=Bacillus subtilis GN=leuB PE=3 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 2.093e-28
Identity = 71/186 (38.17%), Postives = 115/186 (61.83%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 793
            RV    F  A    + +V+++ KAN+++ +  L+ +   +VA+++P++  E +++DN  M L+  P  FDV+V  N++GDI+SD  + L G LG+ PS ++   G+ L E VHGSAPDIAGK +ANP A +LS+  +LR    L ++A  +++A+   +A GK RT DL  S   S  T+AI + +
Sbjct:  171 RVIREGFKMAAAR-KGKVTSVDKANVLESSR-LWREVAEDVAQEFPDVKLEHMLVDNAAMQLIYAPNQFDVVVTENMFGDILSDEASMLTGSLGMLPSASLSSSGLHLFEPVHGSAPDIAGKGMANPFAAILSAAMLLRTSFGLEEEAKAVEDAVNKVLASGK-RTRDLARSEEFSS-TQAITEEV 352          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_STAEQ (3-isopropylmalate dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=leuB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.733e-28
Identity = 71/195 (36.41%), Postives = 117/195 (60.00%), Query Frame = -1
Query:  251 VESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 832
            ++SLK  +++   R+   AF+ A    R++++++ K N++  +  L+ +   +V + YPE+    +++D C M L+  P  FDV+V  NL+GDI+SD  + + G LGL+PS + G+ G  L E +HGSAPDIA ++ ANP  ++LS    LR  L  +D A+ +++ + S I   K  TADLGG   TS+  K +
Sbjct:  152 LDSLKYSSQEIE-RIVRIAFNLANRR-RKKLTSVDKENVLSSSK-LWRQIVNDVKKDYPEVEVNHMLVDACSMHLITQPTQFDVIVTENLFGDILSDEASVIPGSLGLSPSASFGQTGTRLYEPIHGSAPDIANEDKANPFGMVLSLALCLRESLNQNDAANELESIVYSFIQSNK-TTADLGGQYRTSEIFKLL 342          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_RHOSR (3-isopropylmalate dehydrogenase OS=Rhodococcus sp. (strain RHA1) GN=leuB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.733e-28
Identity = 71/188 (37.77%), Postives = 111/188 (59.04%), Query Frame = -1
Query:  287 VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI--ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI---LSTIAEGKYRTADLG 835
            +   + I T   + RV  YAF  A+T  R+ V+ IHK N++     ++ +    V+ +YP++      ID   + +V +P+ FDV+V  NL+GDII+DL   + GG+GL  S NI   G   ++ E VHGSAPDIAG+ +A+PTA +LS+  +LRHL     A RI+ A+   L++  + K  T+++G
Sbjct:  143 IATEVSINTWFGAERVVRYAFALAQTR-RKHVTLIHKTNVLSNAGAIWTRAVETVSAEYPDVETAYCHIDAATIYMVTDPSRFDVIVTDNLFGDIITDLAGAVTGGIGLAASGNIDASGTNPSMFEPVHGSAPDIAGQGIADPTAAILSAALLLRHLGRDGDAARIEAAVEADLASRGDSKVVTSEVG 329          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_RHORT (3-isopropylmalate dehydrogenase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=leuB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.733e-28
Identity = 74/175 (42.29%), Postives = 108/175 (61.71%), Query Frame = -1
Query:  290 LRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI-----ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 796
            +RVA+ AF  A   G+ R+ ++ KAN+M+ +  L+ +   ++   YPEI    +  DNC M LV+ P  FDV+V  NL+GDI+SD  A L G LG+ PS ++G         A+ E VHGSAPDIAG++ ANP A +LS   MLR+  +L ++AD + NA+   +A+G  RT D+
Sbjct:  173 VRVAKVAFDLAGKRGK-RLCSVEKANVME-SGLLWREEVTKLGADYPEIALSHMYADNCAMQLVRQPKQFDVIVTDNLFGDILSDCAAMLTGSLGMLPSASLGAADAAGNRRAMYEPVHGSAPDIAGQDKANPLATILSFSMMLRYSFDLAEEADLVDNAVRGVLAKG-LRTGDI 344          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_DEIGD (3-isopropylmalate dehydrogenase OS=Deinococcus geothermalis (strain DSM 11300) GN=leuB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.733e-28
Identity = 72/185 (38.92%), Postives = 117/185 (63.24%), Query Frame = -1
Query:  245 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK-YPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 793
            RVA  AF +A    R RV+++ KAN+++ ++ L+ +  + + ++ Y  +      +D+  M++V NP+ +DV++  NL+GDI+SDL A + G LGL PS ++G+G   L E +HGSAPDIAG+ +ANP A ++S   +LRH LE    A++++ A+   + E  + T DLGG + T  FT A+ D
Sbjct:  164 RVARVAF-WAAEQRRGRVTSVDKANVLEVSE-LWRRDVQALRDREYRNVHLNHEYVDSVAMLIVANPSRYDVILTENLFGDILSDLAAVIPGSLGLMPSASLGDGP-GLFEPIHGSAPDIAGQGIANPAAAIMSVAMLLRHGLERPQVANQVERAVALALRE--HPTRDLGGQADTRTFTHAVLD 343          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
LEU3_RHOOB1.602e-2837.773-isopropylmalate dehydrogenase OS=Rhodococcus opa... [more]
LEU3_STAHJ2.093e-2837.703-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_MOOTA2.093e-2841.143-isopropylmalate dehydrogenase OS=Moorella thermo... [more]
LEU3_GLOVI2.093e-2838.693-isopropylmalate dehydrogenase OS=Gloeobacter vio... [more]
LEU3_BUCUA2.093e-2838.893-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_BACSU2.093e-2838.173-isopropylmalate dehydrogenase OS=Bacillus subtil... [more]
LEU3_STAEQ2.733e-2836.413-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_RHOSR2.733e-2837.773-isopropylmalate dehydrogenase OS=Rhodococcus sp.... [more]
LEU3_RHORT2.733e-2842.293-isopropylmalate dehydrogenase OS=Rhodospirillum ... [more]
LEU3_DEIGD2.733e-2838.923-isopropylmalate dehydrogenase OS=Deinococcus geo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
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