CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BUCPS (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Pemphigus spyrothecae GN=leuB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.570e-28
Identity = 66/190 (34.74%), Postives = 117/190 (61.58%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSS----TTSDFTKAICDHL 793
            R+A   F  A+   + +++++ KAN+++ +  L+ +    ++++YP++    + ID+  M ++KNP  FDV++  NL+GDI+SD CA + G +G+ PS ++ +    L E   GSAPDIAGKN+ANP A +LS   ++R+ ++L   +D I++A++ T+ +G YRT D+        +T+D    I D L
Sbjct:  173 RIAHIGFKLAQNR-KYKITSVDKANVLESSV-LWRETVNTISKEYPDVKLSHLYIDHAAMQIIKNPDKFDVILTSNLFGDILSDECAMITGSIGMLPSASLNDSNFGLYEPAGGSAPDIAGKNIANPIAQILSIAMLVRYTMKLPMISDHIESAVIDTLKKG-YRTLDIANDKEKYVSTNDIGDIISDIL 359          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_RHOFD (3-isopropylmalate dehydrogenase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=leuB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.662e-28
Identity = 71/175 (40.57%), Postives = 105/175 (60.00%), Query Frame = -1
Query:  272 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTT 793
            R+A  AF  A+   + RV+++ KAN+++ T   +     EV ++YP++  + + +DN  M LV+ P  FDV+V  NL+GDI+SD  A L G +G+ PS ++      L E  HGSAPDIAGK +ANP A +LS+  MLR  L     A RI+ A+   + +G  RTAD+  + TT
Sbjct:  169 RIAHVAFQAARKRSK-RVTSVDKANVLE-TFQFWRDVLTEVGQQYPDVELDHMYVDNAAMQLVRAPKKFDVVVTGNLFGDILSDEAAMLTGSIGMLPSASLNASSQGLYEPSHGSAPDIAGKGVANPLATILSAAMMLRFSLNQEVAAQRIEAAVKDVLVQG-LRTADIFSTGTT 340          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_NITEU (3-isopropylmalate dehydrogenase OS=Nitrosomonas europaea GN=leuB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.662e-28
Identity = 69/171 (40.35%), Postives = 105/171 (61.40%), Query Frame = -1
Query:  290 RVAEYAFHYAKTHGRE--RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 793
            R+A  AF  A   GR   R+ ++ K N+++ T  L+     E A+ YP++T   +++DN  M LV+NP  FDV+V  N++GDI+SD  + L G +G+ PS ++ +    L E +HGSAPDIAGK +ANP A +LS+  MLR+       A RI++A+  T+ +  YRT D+
Sbjct:  167 RIAHVAFQAA---GRRNGRLCSVDKMNVLECTQ-LWRDVVTETAQSYPDVTLSHMLVDNAAMQLVRNPRQFDVVVTGNMFGDILSDEASMLTGSIGMLPSASLDDRNKGLYEPIHGSAPDIAGKGIANPLATILSAAMMLRYSFNQETAASRIEHAVQKTLQQ-SYRTEDI 332          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_CAUCR (3-isopropylmalate dehydrogenase OS=Caulobacter crescentus GN=leuB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.662e-28
Identity = 82/195 (42.05%), Postives = 111/195 (56.92%), Query Frame = -1
Query:  251 KIITRQASLRVAEYAFHYAKTHGR-ERVSAIHKANIMQKTDGLFLK--CCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 820
            ++ T     RV   AF  A+  GR  +V +  K+N+M+   GL  K       A +YP++  E ++ DNC M LV+ P  FDV+V  NL+GDI+SD  A L G LG+ PS  +G  G   L E +HGSAPDIAGK LANP A +LS    LR  L+  + AD +  A+ + +  G  RT DLGGS TT+    A+
Sbjct:  157 QVYTTSEIERVGRVAFELAR--GRTNKVHSAEKSNVMES--GLLWKQVITELHAREYPDVQLEHILADNCAMQLVRAPKQFDVIVTDNLFGDILSDAAAMLTGSLGMLPSAALGAPGKPGLYEPIHGSAPDIAGKGLANPLAAILSFEMALRWSLKQTEAADALLAAVKAALDNGA-RTRDLGGSLTTTQMGDAV 346          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_STAES (3-isopropylmalate dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=leuB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.089e-28
Identity = 71/195 (36.41%), Postives = 116/195 (59.49%), Query Frame = -1
Query:  251 VESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 832
            ++SLK  +++   R+   AF+ A    R++++++ K N++  +  L+ +   +V + YPE+    +++D C M L+  P  FDV+V  NL+GDI+SD  + + G LGL+PS + G+ G  L E +HGSAPDIA ++ ANP  ++LS    LR  L  +D A+ +++ + S I   K  TADLGG   TS   K +
Sbjct:  152 LDSLKYSSQEIE-RIVRIAFNLANRR-RKKLTSVDKENVLSSSK-LWRQIVNDVKKDYPEVEVNHMLVDACSMHLITQPTQFDVIVTENLFGDILSDEASVIPGSLGLSPSASFGQTGTRLYEPIHGSAPDIANEDKANPFGMVLSLALCLRESLNQNDAANELESIVYSFIQSNK-TTADLGGQYRTSKIFKLL 342          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_CHRSD (3-isopropylmalate dehydrogenase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=leuB PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 6.089e-28
Identity = 70/184 (38.04%), Postives = 109/184 (59.24%), Query Frame = -1
Query:  245 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 793
            R+   AF  A+  G  ++ ++ KAN+++ T  L+ +    +A +YP++    + +DN  M LV+ P  FDV+V  N++GDI+SD  A L G +G+ PS ++ E    + E  HGSAPDIAG+ +ANP A +LS   MLR+ LE    A+RI+ A+  T+ +   RTAD+    T    T+A+ D
Sbjct:  170 RIGRVAFEMARERGG-KLCSVDKANVLEATI-LWREVMERLAPEYPDVALSHMYVDNAAMQLVRAPKQFDVIVTGNMFGDILSDAAAMLTGSIGMLPSASLNEQRQGMYEPCHGSAPDIAGQGIANPLATILSVAMMLRYSLEAPQLAERIERAV-GTVLDQGLRTADIAFEGTAPVSTQAMGD 350          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU31_DECAR (3-isopropylmalate dehydrogenase 1 OS=Dechloromonas aromatica (strain RCB) GN=leuB1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.089e-28
Identity = 69/184 (37.50%), Postives = 110/184 (59.78%), Query Frame = -1
Query:  245 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 793
            R+   AF  A+   + R+ ++ K N+++ T  L+     E++  YP++    +++DN  M LVK P  FDV+V  N++GDI+SD  + L G +G+ PS ++ +    L E  HGSAPDIAGK +ANP A +LS+  MLR+   L ++A R++NA+   +A+G YRT D+    T    T+ + D
Sbjct:  164 RIGHVAFQAAQKRDK-RLCSVDKMNVLECTQ-LWRDVMIEISRDYPDVELSHMLVDNAAMQLVKAPKQFDVMVTGNMFGDILSDEASMLTGSIGMLPSASLDDKNKGLYEPSHGSAPDIAGKGVANPLATILSAAMMLRYTFGLEEQALRVENAVKKVLAQG-YRTGDIYERGTNKVGTREMGD 344          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_CHLTE (3-isopropylmalate dehydrogenase OS=Chlorobium tepidum GN=leuB PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.953e-28
Identity = 73/186 (39.25%), Postives = 110/186 (59.14%), Query Frame = -1
Query:  251 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGS----STTSDFTKAI 793
            R+A  AF YA+  G  +V++I KAN+++ +   +     EV + +PEI   ++ +DN  M +V+NP  F+V+V  NL+GDI+SD+   + G LG+ PS +IG    AL E +HGSAPDIAG+N ANP A + S   M  +     + A  I  AI   +A G +RT D+  +    S+T++ T AI
Sbjct:  166 RIARLAFEYAQKRGNAKVTSIDKANVLEVSQ-FWRNIVHEVHQDFPEIELVDMYVDNAAMQVVRNPKQFEVIVTSNLFGDILSDISGMITGSLGMLPSASIGSEH-ALYEPIHGSAPDIAGQNKANPIATIASVAMMFENSFNRPEVAADIYAAIEGALAAG-FRTGDIAAAGEAISSTTEMTAAI 348          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BUCTS (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Thelaxes suberi GN=leuB PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.953e-28
Identity = 73/189 (38.62%), Postives = 115/189 (60.85%), Query Frame = -1
Query:  257 KIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTK 820
            +I  R    R+A+ AF  A++  ++++ +I KAN++ K+  L+     ++A K+P +  E + IDN  M L+KNP++FDV++  NL+GDIISD CA +IG +GL PS ++ + G  L E   GSAP+IAGK +ANP A +LS   +L++ L L   +  I  A+   + + KY T D+  S    +F K
Sbjct:  165 EIYFRSEIKRIAKIAFQIAQSR-KKKIVSIDKANVL-KSSILWRDTVNKMAYKFPNVKLEHMYIDNATMELIKNPSSFDVILCSNLFGDIISDECAAIIGSIGLLPSASLNKSGFGLYEPAGGSAPNIAGKTIANPIAQILSLSMLLKYSLHLPFLSSCIDEAVHEALVK-KYMTMDI--SKNPQNFLK 348          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_THEEB (3-isopropylmalate dehydrogenase OS=Thermosynechococcus elongatus (strain BP-1) GN=leuB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.039e-27
Identity = 69/175 (39.43%), Postives = 107/175 (61.14%), Query Frame = -1
Query:  272 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTT 793
            R+   AF  A+   + ++ ++ KAN+++ +  L+      ++ +YP++    + +DN  M LV+ P  FD +V  NL+GDI+SD+ A L G +G+ PS ++GE G AL E VHGSAPDIAG++ ANP A++LS+  MLR+ L     A  I+ AI + + +G YRT DL     T
Sbjct:  173 RIGRVAFETARKR-QGKLCSVDKANVLEVSQ-LWRDRLTALSAEYPDVELTHLYVDNAAMQLVRAPKQFDTIVTSNLFGDILSDIAAMLTGSIGMLPSASLGESGPALFEPVHGSAPDIAGQDKANPLAMVLSAAMMLRYGLNQPAAAQAIEEAITAVLDQG-YRTGDLMSEGCT 344          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
LEU3_BUCPS3.570e-2834.743-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_RHOFD4.662e-2840.573-isopropylmalate dehydrogenase OS=Rhodoferax ferr... [more]
LEU3_NITEU4.662e-2840.353-isopropylmalate dehydrogenase OS=Nitrosomonas eu... [more]
LEU3_CAUCR4.662e-2842.053-isopropylmalate dehydrogenase OS=Caulobacter cre... [more]
LEU3_STAES6.089e-2836.413-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_CHRSD6.089e-2838.043-isopropylmalate dehydrogenase OS=Chromohalobacte... [more]
LEU31_DECAR6.089e-2837.503-isopropylmalate dehydrogenase 1 OS=Dechloromonas... [more]
LEU3_CHLTE7.953e-2839.253-isopropylmalate dehydrogenase OS=Chlorobium tepi... [more]
LEU3_BUCTS7.953e-2838.623-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_THEEB1.039e-2739.433-isopropylmalate dehydrogenase OS=Thermosynechoco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
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