CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH3G_MACFA (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial (Fragment) OS=Macaca fascicularis GN=IDH3G PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.474e-55
Identity = 105/202 (51.98%), Postives = 140/202 (69.31%), Query Frame = -1
Query:  239 VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 844
            V GVVESLKIIT+  SLR+AEYAF  A+  GR++V+A+HKANIM+  DGLFL+CCREVA +YP+IT+E +++DN  M LV  P  FDV+VMPNLYG+I++++CAGL+GG GL    N G        A   +   IA KN+ANPTA LL+S  ML HL+LH  A  I+ A+L+++      T D+GG  TTS+  + I  H+
Sbjct:  144 VAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQGTTSEAIQDIIRHI 345          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH3G_HUMAN (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Homo sapiens GN=IDH3G PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.844e-55
Identity = 104/202 (51.49%), Postives = 140/202 (69.31%), Query Frame = -1
Query:  239 VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 844
            V GVVESLKIIT+  SLR+AEYAF  A+  GR++V+A+HKANIM+  DGLFL+CCREVA +YP+IT+E +++DN  M LV  P  FDV+VMPNLYG+I++++CAGL+GG GL    N G        A   +   IA KN+ANPTA LL+S  ML HL+LH  A  I+ A+L+++      T D+GG  TTS+  + +  H+
Sbjct:  182 VAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQGTTSEAIQDVIRHI 383          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH2_YEAST (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Saccharomyces cerevisiae GN=IDH2 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.632e-55
Identity = 117/207 (56.52%), Postives = 152/207 (73.43%), Query Frame = -1
Query:  239 VVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDLCAGL-IGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEG-KYRTADLGGSSTTSDFTKAICDHL 847
            V  GVV+S+K+ITR AS RV  YAF YA+  GR RV  +HK+ I +  DGLF+   +E++++YP++T E  +IDN  + +V NP+A+   V V PNLYGDI+SDL +GL  G LGLTPS NIG   I++ EAVHGSAPDIAG++ ANPTALLLSSV ML H+ L + AD+IQNA+LSTIA G + RT DL G++TTS FT+A+   L
Sbjct:  164 VCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGH-KISIFEAVHGSAPDIAGQDKANPTALLLSSVMMLNHMGLTNHADQIQNAVLSTIASGPENRTGDLAGTATTSSFTEAVIKRL 369          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH1_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial OS=Arabidopsis thaliana GN=IDH1 PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 9.968e-55
Identity = 107/202 (52.97%), Postives = 140/202 (69.31%), Query Frame = -1
Query:  251 VVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIAL---AEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 847
            VV GVVESLK+IT+  S R+A+YAF YA  + R++V+A+HKANIM+  DGLFL+ CREVA+KYP ITY E+++DNCCM LV  P  FDV+V PNLYG+++++  AG+ GG G+ P  N+G         A A +     I  +N ANP ALLLSS  MLRHL+    ADR++ A+   IAEGK RT DLGG+STT +   A+
Sbjct:  161 VVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPSITYNEIIVDNCCMQLVAKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKDKIVLENKANPVALLLSSAMMLRHLQFPSFADRLETAVKKVIAEGKCRTKDLGGTSTTQEVVDAV 362          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH3G_RAT (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Rattus norvegicus GN=Idh3g PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.700e-54
Identity = 104/202 (51.49%), Postives = 139/202 (68.81%), Query Frame = -1
Query:  239 VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 844
            V GVVESLKIIT+  SLR+AEYAF  A+  GR++V+A+HKANIM+  DGLFL+CCREVA +YP+IT++ +++DN  M LV  P  FDV+VMPNLYG+I++++CAGL+GG GL    N G        A   +   IA KN+ANPTA LL+S  ML HL+LH  A  I+ A+L+++      T D+GG  TTS   + I  H+
Sbjct:  182 VAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARYPQITFDSMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQGTTSQAIQDIIRHI 383          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH3G_MOUSE (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Mus musculus GN=Idh3g PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.788e-54
Identity = 104/202 (51.49%), Postives = 138/202 (68.32%), Query Frame = -1
Query:  239 VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 844
            V GVVESLKIIT+  SLR+AEYAF  A+  GR++V+A+HKANIM+  DGLFL+CCREVA  YP+IT++ +++DN  M LV  P  FDV+VMPNLYG+I++++CAGL+GG GL    N G        A   +   IA KN+ANPTA LL+S  ML HL+LH  A  I+ A+L+++      T D+GG  TTS   + I  H+
Sbjct:  182 VAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAAHYPQITFDSMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQGTTSQAIQDIIRHI 383          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_ARCFU (3-isopropylmalate dehydrogenase OS=Archaeoglobus fulgidus GN=leuB PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.461e-54
Identity = 105/199 (52.76%), Postives = 143/199 (71.86%), Query Frame = -1
Query:  239 VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 835
            V E++++ITR+AS R+A YAF  AK  GR++V+A+HKAN+M+KT GLF   CREVA+ YPEI Y +  ID  CM LV +P  FDV+V  N++GDI+SDL AGL+GGLGL PS N+GE   A+ E VHG+A DIAGK +ANPTA++L++  MLRH    ++A +++ A+  TI EGK +T DLGG+  T +F   +   L
Sbjct:  129 VTEAIRVITREASERIARYAFELAKREGRKKVTALHKANVMKKTCGLFRDVCREVAKDYPEIQYNDYYIDAACMYLVMDPFRFDVIVTTNMFGDIVSDLAAGLVGGLGLAPSANVGE-RTAIFEPVHGAAFDIAGKGIANPTAMILTACMMLRHFGYVEEAKKVEEAVEKTIKEGK-KTPDLGGNLKTMEFANEVASLL 325          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH2_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial OS=Arabidopsis thaliana GN=IDH2 PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.714e-52
Identity = 105/209 (50.24%), Postives = 141/209 (67.46%), Query Frame = -1
Query:  239 VVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNL------ANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 847
            VV GVVESLK+IT+  S R+A+YAF YA  + R++V+A+HKANIM+  DGLFL+ C+EVA+KYP I Y E+++DNCCM LV  P  FDV+V PNLYG+++++  AG+ GG G+ P  N+   G   A    G++    GK+       ANP ALLLSS  MLRHL+    ADR++ A+   IAEG  RT DLGG+STT +   A+  +L
Sbjct:  161 VVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCQEVAKKYPSIAYNEIIVDNCCMQLVARPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNV---GAEYAVFEQGASAGNVGKDTTEEQKNANPVALLLSSAMMLRHLQFPSFADRLETAVKRVIAEGNCRTEDLGGNSTTQEVVDAVIANL 366          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH2_KLULA (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Kluyveromyces lactis GN=IDH2 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.630e-52
Identity = 109/207 (52.66%), Postives = 150/207 (72.46%), Query Frame = -1
Query:  239 VVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDLCAGL-IGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA-EGKYRTADLGGSSTTSDFTKAICDHL 847
            V  GVV+S+K+IT+ AS RV  YAF YA+   R +V  +HK+ I +  DGLF+   ++++ +YP+I  +  ++DN  +  V++P A+D  V+V PNLYGDI+SDL +GL  G LGLTPS NIG   +++ EAVHGSAPDIAG+N ANPTALLLSSV ML H+ L + AD+I+ A+L+TIA + K RT DLGGS++TS FT A+ + L
Sbjct:  163 VAPGVVQSIKLITQDASERVIRYAFEYARAVDRSKVLVVHKSTIQRLADGLFVDVAKKLSSEYPDIELQTELLDNTVLKTVQHPEAYDDVVVVCPNLYGDILSDLNSGLSAGSLGLTPSANIGH-TVSIFEAVHGSAPDIAGQNKANPTALLLSSVMMLNHMGLTEHADKIEKAVLTTIASDAKNRTGDLGGSASTSSFTDAVIERL 368          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH3_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial OS=Arabidopsis thaliana GN=IDH3 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.298e-51
Identity = 105/202 (51.98%), Postives = 136/202 (67.33%), Query Frame = -1
Query:  251 VVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPD--IAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 847
            VV GVVESLK+IT+  S R+A YAF YA  + R++V+A+HKANIM+  DGLFL+ CREVA+ Y  ITY E+++DNCCM LV  P  FDV+V PNLYG++I++  AG+ GG G+ P  N+G E  I    A  G+  +  +  +  ANP ALLLSS  MLRHL     ADR++ A+   I EGKYRT DLGG  TT +   A+
Sbjct:  162 VVPGVVESLKVITKFCSERIARYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKHYSGITYNEIIVDNCCMQLVAKPEQFDVMVTPNLYGNLIANTAAGIAGGTGVMPGGNVGAEHAIFEQGASAGNVGNDKMVEQKKANPVALLLSSAMMLRHLRFPTFADRLETAVKQVIKEGKYRTKDLGGDCTTQEVVDAV 363          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
IDH3G_MACFA4.474e-5551.98Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
IDH3G_HUMAN5.844e-5551.49Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
IDH2_YEAST7.632e-5556.52Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDH1_ARATH9.968e-5552.97Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH3G_RAT1.700e-5451.49Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
IDH3G_MOUSE3.788e-5451.49Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
LEU3_ARCFU6.461e-5452.763-isopropylmalate dehydrogenase OS=Archaeoglobus f... [more]
IDH2_ARATH2.714e-5250.24Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH2_KLULA4.630e-5252.66Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDH3_ARATH2.298e-5151.98Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
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