CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_CORJK (3-isopropylmalate dehydrogenase OS=Corynebacterium jeikeium (strain K411) GN=leuB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.829e-25
Identity = 65/174 (37.36%), Postives = 102/174 (58.62%), Query Frame = -1
Query:  287 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNI--GEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAE---GKYRTADLG 793
            RV   AF  A++  R++++ +HK N++     L+ +    V ++YPE+  +   ID   + +V  P  +DV+V  NL+GDI++DL   + GG+GL  S NI       ++ E VHGSAPDIAG+ +A+P A +LS   MLRHL     A+RI+ A+L+       G  +TA++G
Sbjct:  158 RVVRDAFERAQSR-RKKLTWVHKTNVLVNAGSLWQRAIETVGQEYPEVQVDYNHIDAATIYMVTKPQEYDVIVTDNLFGDILTDLAGAVTGGIGLAASGNIDPSRKNPSMFEPVHGSAPDIAGQGIADPCAAILSVALMLRHLGDDANAERIEAAVLAEAGSRDGGPVKTAEVG 330          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_SYMTH (3-isopropylmalate dehydrogenase OS=Symbiobacterium thermophilum GN=leuB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 73/212 (34.43%), Postives = 117/212 (55.19%), Query Frame = -1
Query:  239 RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG----GI--ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSST----TSDFTKAICDHL 841
            RGV  + ++ T     R+A   F  A+   R R++++ K N+M+    L+     EVA ++P++  E ++ DN  M +++ P  FDV++  NL+GD +SD  A L G +GL PS ++G      G+     E +HGSAPDIAG++ ANP A +L    +LRH L   D A  ++ A+ + + EG  RTAD+    T    T+   +A+ D +
Sbjct:  161 RGV--NTEVYTDAEIARIARMGFEIARGR-RRRLTSVDKGNVME-AGKLWRTVVDEVAREFPDVEVEHLLADNAAMQILRRPGDFDVMLASNLFGDFLSDEAAMLTGSIGLLPSASLGAARNRFGLPKGFYEPIHGSAPDIAGQDRANPLAAILCGAMLLRHSLGREDAARAVEQAVAAVLEEG-LRTADITVPGTAVLGTAAMARAVADRV 367          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_NEILA (3-isopropylmalate dehydrogenase (Fragment) OS=Neisseria lactamica GN=leuB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 60/147 (40.82%), Postives = 94/147 (63.95%), Query Frame = -1
Query:  353 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKA 793
            R+A  AF  A+   + +V ++ KAN+++ T+ L+ +   E+ ++YP++    + +DN  M LV+ P  FDV+   N++GDI+SD  + L G LG+ PS ++ E G  L E  HGSAPDIAG+N ANP A +LS   +LR+  L+D+A
Sbjct:  170 RIAHVAFQSAQKRSK-KVCSVGKANVLETTE-LWREIFEEIGKEYPDVELSHMYVDNAAMQLVRAPKQFDVIATGNIFGDILSDEASMLTGSLGMLPSASLDENGKGLYEPSHGSAPDIAGQNKANPLATILSLAMLLRY-SLNDEA 313          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_SILPO (3-isopropylmalate dehydrogenase OS=Silicibacter pomeroyi GN=leuB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.825e-25
Identity = 73/177 (41.24%), Postives = 105/177 (59.32%), Query Frame = -1
Query:  281 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI-----ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGS 793
            RVA  AF  A    + ++ ++ KAN+M+ +  L+ +    VA+ YPE+    +  DN  M LV+ P  FDV++  NL+GDI+SD  A L G LG+ PS ++G         AL E VHGSAPDIAG+  ANP A +LS    LR+  +   +ADR++ A+   +A+G  RTADL G+
Sbjct:  171 RVARSAFELAMRRSK-KLCSMEKANVME-SGILWREVVTRVAKDYPEVELSHMYADNGAMQLVRAPKQFDVILTDNLFGDILSDCAAMLTGSLGMLPSASLGAPMANGRPKALYEPVHGSAPDIAGQGKANPIACILSFAMALRYSFDQGAEADRLEAAVEQVLADG-VRTADLLGT 344          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_XYLFT (3-isopropylmalate dehydrogenase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=leuB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.302e-25
Identity = 64/184 (34.78%), Postives = 105/184 (57.07%), Query Frame = -1
Query:  245 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 793
            R+ +  F  A+  G+ ++ ++ KAN++  +  L+     E+A+ YP++T   + +DN  M LV+ P  FDV+V  N++GDI+SD  + L G +G+ PS ++      + E  HGSAPDIAG+ +ANP A +LS   +LR+ +     AD I+ A+   + +   RTAD+     T   T A+ D
Sbjct:  171 RILKVGFEMARLRGK-KLCSVDKANVLASSQ-LWRTVAGEMAKDYPDVTLSHMYVDNAAMQLVRYPKQFDVIVTENMFGDILSDQASMLTGSIGMLPSASLDANNKGMYEPCHGSAPDIAGQGVANPLATILSVAMLLRYGMGYIKTADAIEYAV-GVVLDSGLRTADIWSEGMTKVGTVAMGD 351          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_RHOPB (3-isopropylmalate dehydrogenase OS=Rhodopseudomonas palustris (strain BisB18) GN=leuB PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 6.302e-25
Identity = 75/182 (41.21%), Postives = 110/182 (60.44%), Query Frame = -1
Query:  272 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREV-AEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI------ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTT 793
            R+A  AF  A+   R +V+++ K N+M K+  L+ +    V AE Y ++  E  + D+  M LVK P  FDV+V  NL+GDI+SD+ A L G LG+ PS ++G          ++ E VHGSAPDIAGK LANP A+L S    LR+ L++ + AD++  AI + +A+G  RTAD+    +T
Sbjct:  172 RIARVAFDLARKR-RNKVTSMEKRNVM-KSGVLWNEVVTRVHAEDYKDVQLEHQLADSGGMNLVKWPKQFDVIVTDNLFGDILSDIAAMLTGSLGMLPSASLGAVDANTGKRKSMYEPVHGSAPDIAGKGLANPVAMLASFGMALRYSLDMGELADKLDAAIAAVLAKG-LRTADIKSEGST 350          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_NEUCR (3-isopropylmalate dehydrogenase OS=Neurospora crassa GN=leu-1 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 6.302e-25
Identity = 72/180 (40.00%), Postives = 109/180 (60.56%), Query Frame = -1
Query:  239 RVSAIHKANIMQKTDGLFLKCCREVAEK-YPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI--------ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 745
            +V ++ KAN++  T  L+ K   +V  K +P++  E  +ID+  M+LVKNP A + V++  NL+GDIISD  + + G +GL PS ++G  GI         + E +HGSAPDI+GK + NP   +LS   MLR+ L L  +AD ++ A+ + I  G  +T DLGG++TTSD   A+   L
Sbjct:  187 KVWSLDKANVLA-TSRLWRKTVTDVISKEFPQLQLEHQLIDSAAMLLVKNPRALNGVVITSNLFGDIISDEASVIPGSIGLLPSASLG--GIPDGKGKCNGIYEPIHGSAPDISGKGIVNPVGTILSVAMMLRYSLNLPKEADAVEAAVKAAIDNGT-KTKDLGGNATTSDMGNAVVAEL 362          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU31_BORBR (3-isopropylmalate dehydrogenase 1 OS=Bordetella bronchiseptica GN=leuB1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.302e-25
Identity = 73/193 (37.82%), Postives = 111/193 (57.51%), Query Frame = -1
Query:  245 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLF----LKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGG--IALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTAD-LGGSSTTSDFTKAICD 793
            R+A  AF  A+  G  RV ++ K+N+++   GL     ++ CR+   +YP++  E +++DNC + L   PA FDVL+  NL+GDI+SD    + G LG+ PS + G  +GG      E VHGSAPDIAG+ +ANP   +LS    LR       +AD ++ A+   +A G  RT D L G++  +  T+A+ D
Sbjct:  173 RIARVAFELARARGG-RVCSVDKSNVLES--GLLWREEVQACRDA--EYPDVELEHILVDNCALQLCLRPARFDVLLADNLFGDILSDAAGAVAGSLGMLPSASFGAEDGGRRRGFYEPVHGSAPDIAGQGIANPLGAILSLALALRWTFRQPAEADLLERAVERALAGGA-RTLDLLAGAAAPALSTRAMAD 359          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH_STRMU (Isocitrate dehydrogenase [NADP] OS=Streptococcus mutans GN=icd PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 6.302e-25
Identity = 68/207 (32.85%), Postives = 115/207 (55.56%), Query Frame = -1
Query:  239 LKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY-------PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYR---TADLGGSS-TTSDFTKAICDHL 823
            +K I+ + S R+   A  YA  +   +V+ +HK NI + T+G F K   E+A++         ++  ++++ DN    ++  P  FDV+ + NL GD  SD  A  +GG+G++P  NI  + G A+ EA HG+APDIAG++LANP+++LLS   +  ++     +D I  A+   IA G+       +LG  + TT  F++ +  +L
Sbjct:  187 IKPISIEGSQRLIRAAIEYALANNLTKVTLVHKGNIQKFTEGGFRKWGYELAKREYAAELASGQLVVDDIIADNFLQQILLKPERFDVVALTNLNGDYASDALAAQVGGIGISPGANINYQTGHAIFEATHGTAPDIAGQDLANPSSVLLSGCMLFDYIGWSKVSDLIMKAVEKAIANGQVTIDFAKELGVEALTTRQFSEVLLTYL 393          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_MYCGI (3-isopropylmalate dehydrogenase OS=Mycobacterium gilvum (strain PYR-GCK) GN=leuB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 66/188 (35.11%), Postives = 105/188 (55.85%), Query Frame = -1
Query:  287 VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE--GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI---LSTIAEGKYRTADLG 835
            +   + + T     RV + AF  A+   R+ ++ +HK N++     L+ +  + VA +YPE+      +D   + +V +P  FDV+V  NL+GDII+DL A + GG+GL  S NI       ++ E VHGSAPDIAG+ +A+PTA ++S   +L H+   D A R+  A+   L+T  + K  T  +G
Sbjct:  143 IATEVSVNTAYGVRRVVQDAFKRAQQR-RKHLTLVHKNNVLTNAGSLWWRTVQAVAAEYPEVEVAYQHVDAATIHMVTDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATLTNPSMFEPVHGSAPDIAGQGIADPTAAIMSVSLLLAHMAEIDAAARVDKAVAEHLATRGDEKLSTTQVG 329          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
LEU3_CORJK2.829e-2537.363-isopropylmalate dehydrogenase OS=Corynebacterium... [more]
LEU3_SYMTH3.694e-2534.433-isopropylmalate dehydrogenase OS=Symbiobacterium... [more]
LEU3_NEILA3.694e-2540.823-isopropylmalate dehydrogenase (Fragment) OS=Neis... [more]
LEU3_SILPO4.825e-2541.243-isopropylmalate dehydrogenase OS=Silicibacter po... [more]
LEU3_XYLFT6.302e-2534.783-isopropylmalate dehydrogenase OS=Xylella fastidi... [more]
LEU3_RHOPB6.302e-2541.213-isopropylmalate dehydrogenase OS=Rhodopseudomona... [more]
LEU3_NEUCR6.302e-2540.003-isopropylmalate dehydrogenase OS=Neurospora cras... [more]
LEU31_BORBR6.302e-2537.823-isopropylmalate dehydrogenase 1 OS=Bordetella br... [more]
IDH_STRMU6.302e-2532.85Isocitrate dehydrogenase [NADP] OS=Streptococcus m... [more]
LEU3_MYCGI1.404e-2435.113-isopropylmalate dehydrogenase OS=Mycobacterium g... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
back to top