CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_SPIPL (3-isopropylmalate dehydrogenase OS=Spirulina platensis GN=leuB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.833e-24
Identity = 65/169 (38.46%), Postives = 99/169 (58.58%), Query Frame = -1
Query:  290 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 793
            R+    F  AK   + R+ ++ KAN++  +  L+      +A  YPE+    + +DN  M LV+ P  FD +V  NL+GDI+SD  A L G +G+ PS ++G  G  + E VHGSAPDIAG++ ANP A +LS+  MLR+ L+    +D ++ A+L  +  G Y T D+
Sbjct:  173 RIGRVGFETAKKR-QGRLCSVDKANVLDVSQ-LWRDRIMALAADYPEVELSHLYVDNAAMQLVRWPKQFDTIVTGNLFGDILSDAAAMLTGSIGMLPSASLGASGPGVFEPVHGSAPDIAGQDKANPLAQVLSAAMMLRYGLDEPAASDPVEKAVLKVLDWG-YPTGDI 338          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_CORU7 (3-isopropylmalate dehydrogenase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=leuB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.833e-24
Identity = 62/174 (35.63%), Postives = 102/174 (58.62%), Query Frame = -1
Query:  287 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA---EGKYRTADLG 793
            RV   AF  A+   R++++ +HK N++    GL+ +    + +++P++  +   ID   + +V +P+ +DV+V  NL+GDI++DL   + GG+GL  S NI       ++ E VHGSAPDIAG+ +A+P A +LS   MLRHL     A++I+ A+L   A       RT ++G
Sbjct:  158 RVVRDAFRRAQER-RKKLTWVHKTNVLVNAGGLWQRAIETIGKEFPDVEVDYNHIDAATIYMVTDPSRYDVIVTDNLFGDILTDLAGAVTGGIGLAASGNIDPTHNNPSMFEPVHGSAPDIAGQGIADPCAAILSVALMLRHLGDEANAEKIEKAVLDEAAGRDGSPIRTTEVG 330          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_SYNPX (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain WH8102) GN=leuB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 70/186 (37.63%), Postives = 108/186 (58.06%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 793
            R+A  AF  A+   R  + ++ KAN++  +  L+      +A  Y ++    + +DN  M LV++P  FDVL+  NL+GDI+SD  A L G +G+ PS ++G     L E VHGSAPDIAG++ ANP A++LS+  MLR  L+  + A  ++ A+   +A G +RT DL     T+   +A+ D L
Sbjct:  171 RIARVAFDLARER-RGNLCSVDKANVLDVSQ-LWRDRVDAMAPAYSDVEVSHMYVDNAAMQLVRSPRQFDVLLTGNLFGDILSDEAAMLTGSIGMLPSASLGSDCPGLFEPVHGSAPDIAGQDKANPMAMVLSAAMMLRIGLKQTEAAADLEAAVDKVLAAG-FRTGDLMAEGCTALGCRAMGDAL 353          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_RHOP2 (3-isopropylmalate dehydrogenase OS=Rhodopseudomonas palustris (strain HaA2) GN=leuB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 74/182 (40.66%), Postives = 108/182 (59.34%), Query Frame = -1
Query:  272 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREV-AEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE------GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTT 793
            R+   AF  A+   R +V+++ K N+M KT  L+ +   +V A +Y ++  E  + D+  M LVK P  FDV+V  NL+GD++SD+ A L G LG+ PS ++G          A+ E VHGSAPDIAGK LANP A+L S    LR+ L++ + AD++  AI   +A G  RTAD+    +T
Sbjct:  172 RIGRVAFDLARKR-RNKVTSMEKRNVM-KTGVLWNEVITQVHAREYKDVQLEHQLADSGGMNLVKWPKQFDVIVTDNLFGDMLSDIAAMLTGSLGMLPSASLGAVDDTTGKRKAMYEPVHGSAPDIAGKGLANPVAMLASFGMALRYSLDMGELADKLDEAIAVVLARG-LRTADIKSEGST 350          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_PSEAE (3-isopropylmalate dehydrogenase OS=Pseudomonas aeruginosa GN=leuB PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 62/169 (36.69%), Postives = 97/169 (57.40%), Query Frame = -1
Query:  290 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 793
            R+A   F  A+     R+ ++ KAN++  +  L+ +   EVA+ YP++    + +DN  M LV+ P  FDV+V  N++GDI+SD  + L G +G+ PS ++      + E  HGSAPDIAG+ +ANP A +LS   MLR+       AD I+ A+   + +G  RT D+
Sbjct:  171 RIARVGFDMARVRNN-RLCSVDKANVLASSQ-LWREVVEEVAKDYPDVELSHMYVDNAAMQLVRAPKQFDVMVTDNMFGDILSDEASMLTGSIGMLPSASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFSQATAADAIEQAVSKVLDQG-LRTGDI 336          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_MYCSS (3-isopropylmalate dehydrogenase OS=Mycobacterium sp. (strain MCS) GN=leuB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 64/174 (36.78%), Postives = 103/174 (59.20%), Query Frame = -1
Query:  287 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI---LSTIAEGKYRTADLG 793
            RV E AF  A+   R+ ++ +HK N++     L+ +  +EV  +YP++      +D+  + +V +P  FDV+V  NL+GDI++DL A + GG+GL  S NI       ++ E VHGSAPDIAG+ +A+PTA ++S   +L H+   D A R+  A+   LS+  + +  TA +G
Sbjct:  157 RVVEDAFRRAQQR-RKHLTLVHKNNVLTFAGALWWRTVQEVGAEYPDVEIAYQHVDSAMIHIVTDPGRFDVIVTDNLFGDIVTDLAAAVCGGIGLAASGNIDATRTNPSMFEPVHGSAPDIAGQGIADPTAAIMSVALLLAHVGETDAAARVDKAVEAHLSSRGDQELGTAAVG 329          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_MYCSK (3-isopropylmalate dehydrogenase OS=Mycobacterium sp. (strain KMS) GN=leuB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 64/174 (36.78%), Postives = 103/174 (59.20%), Query Frame = -1
Query:  287 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI---LSTIAEGKYRTADLG 793
            RV E AF  A+   R+ ++ +HK N++     L+ +  +EV  +YP++      +D+  + +V +P  FDV+V  NL+GDI++DL A + GG+GL  S NI       ++ E VHGSAPDIAG+ +A+PTA ++S   +L H+   D A R+  A+   LS+  + +  TA +G
Sbjct:  157 RVVEDAFRRAQQR-RKHLTLVHKNNVLTFAGALWWRTVQEVGAEYPDVEIAYQHVDSAMIHIVTDPGRFDVIVTDNLFGDIVTDLAAAVCGGIGLAASGNIDATRTNPSMFEPVHGSAPDIAGQGIADPTAAIMSVALLLAHVGETDAAARVDKAVEAHLSSRGDQELGTAAVG 329          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_MYCSJ (3-isopropylmalate dehydrogenase OS=Mycobacterium sp. (strain JLS) GN=leuB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 64/174 (36.78%), Postives = 103/174 (59.20%), Query Frame = -1
Query:  287 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI---LSTIAEGKYRTADLG 793
            RV E AF  A+   R+ ++ +HK N++     L+ +  +EV  +YP++      +D+  + +V +P  FDV+V  NL+GDI++DL A + GG+GL  S NI       ++ E VHGSAPDIAG+ +A+PTA ++S   +L H+   D A R+  A+   LS+  + +  TA +G
Sbjct:  157 RVVEDAFRRAQQR-RKHLTLVHKNNVLTFAGALWWRTVQEVGAEYPDVEIAYQHVDSAMIHIVTDPGRFDVIVTDNLFGDIVTDLAAAVCGGIGLAASGNIDATRTNPSMFEPVHGSAPDIAGQGIADPTAAIMSVALLLAHVGETDAAARVDKAVEAHLSSRGDQELGTAAVG 329          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_RHOS4 (3-isopropylmalate dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=leuB PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.127e-24
Identity = 75/186 (40.32%), Postives = 107/186 (57.53%), Query Frame = -1
Query:  284 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA----EKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI-----ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGG 811
            T +   RVA  AF  A+     RV ++ KAN+M+   G+  +   EV      +YP++    +  DN  M LV+ P  FDV+V  NL+GDI+SD  A L G LG+ PS ++G         AL E VHGSAPDIAG+  ANP A +LS    LR+  ++ ++A R++ A+ + +A+G  RTADL G
Sbjct:  166 TTEEIRRVARSAFELARRRNN-RVCSMEKANVMES--GILWR--EEVQWVHDNEYPDVELSHMYADNGAMQLVRWPRQFDVIVTDNLFGDILSDCAAMLTGSLGMLPSASLGAPMANGRPKALYEPVHGSAPDIAGQGKANPIACILSFAMALRYSFDMGEEATRLEKAVETVLADG-VRTADLMG 345          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_RHOPA (3-isopropylmalate dehydrogenase OS=Rhodopseudomonas palustris GN=leuB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.085e-24
Identity = 72/182 (39.56%), Postives = 109/182 (59.89%), Query Frame = -1
Query:  272 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK-YPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI------ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTT 793
            R+   AF  A+   R +V+++ K N+M KT  L+ +    V ++ Y ++  +  + D+  M LVK P  FDV+V  NL+GD++SD+ A L G LG+ PS ++GE         ++ E VHGSAPDIAGK +ANP A+L S    LR+ L++   AD++  AI + +A+G  RTAD+    TT
Sbjct:  172 RIGRVAFDLARKR-RNKVTSMEKRNVM-KTGVLWNEVITAVHDREYKDVQLDHQLADSGGMNLVKWPKQFDVIVTDNLFGDMLSDIAAMLTGSLGMLPSASLGEVDAKTGKRKSMYEPVHGSAPDIAGKGMANPVAMLASFGMALRYSLDMGALADKLDEAIAAVLAKG-LRTADIKSEGTT 350          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
LEU3_SPIPL1.833e-2438.463-isopropylmalate dehydrogenase OS=Spirulina plate... [more]
LEU3_CORU71.833e-2435.633-isopropylmalate dehydrogenase OS=Corynebacterium... [more]
LEU3_SYNPX2.395e-2437.633-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_RHOP22.395e-2440.663-isopropylmalate dehydrogenase OS=Rhodopseudomona... [more]
LEU3_PSEAE2.395e-2436.693-isopropylmalate dehydrogenase OS=Pseudomonas aer... [more]
LEU3_MYCSS2.395e-2436.783-isopropylmalate dehydrogenase OS=Mycobacterium s... [more]
LEU3_MYCSK2.395e-2436.783-isopropylmalate dehydrogenase OS=Mycobacterium s... [more]
LEU3_MYCSJ2.395e-2436.783-isopropylmalate dehydrogenase OS=Mycobacterium s... [more]
LEU3_RHOS43.127e-2440.323-isopropylmalate dehydrogenase OS=Rhodobacter sph... [more]
LEU3_RHOPA4.085e-2439.563-isopropylmalate dehydrogenase OS=Rhodopseudomona... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
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