CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH3B_CAEEL (Probable isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C37E2.1 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.318e-50
Identity = 95/201 (47.26%), Postives = 135/201 (67.16%), Query Frame = -1
Query:  245 VVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 847
            +V GV+E LKI TR  + R+A++AF YA   GR++V+A+HKANIM+  DGLFL+ C  VA++YP+I +E ++IDN CM LV  P  FDV+VMPNLYG+II +L AGL+GG G+ P  ++G   +        S  +  G+++ANPTA++L +  ML HL L    + ++ A+   + EGK RT DLGG +TT DF  A+ D
Sbjct:  175 LVPGVIECLKISTRTKAERIAKFAFDYATKTGRKKVTAVHKANIMKLGDGLFLRTCEGVAKQYPKIQFESMIIDNTCMQLVSKPEQFDVMVMPNLYGNIIDNLAAGLVGGAGVVPGQSVGRDFVIFEPGSRHSFQEAMGRSIANPTAMILCAANMLNHLHLDAWGNSLRQAVADVVKEGKVRTRDLGGYATTVDFADAVID 375          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH1_AJECA (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Ajellomyces capsulata GN=IDH1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.378e-48
Identity = 96/202 (47.52%), Postives = 131/202 (64.85%), Query Frame = -1
Query:  239 VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 844
            V GVVESLKIITR  S R+A++AF +A  + R++V+ IHKANIM+  DGLF     +VAE YP +   ++++DN  M  V  P  FDV+VMPNLYG I+S++ A L+GG G+ P CN+G               DI GK+ ANPTAL+LS   +LRHL L + A+RI  A+   I EG  RT D+GG ++T +FT+A+ D +
Sbjct:  183 VSGVVESLKIITRAKSERIAKFAFSFALANNRKKVTCIHKANIMKLADGLFRSTFHKVAESYPTLETNDMIVDNASMQAVARPQQFDVMVMPNLYGGILSNVGAALVGGPGIVPGCNMGRDVAVFEPGCRHVGLDIKGKDQANPTALILSGSMLLRHLGLDEHANRISKAVYDVIGEGVTRTRDMGGQASTHEFTRAVLDKM 384          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_METTH (3-isopropylmalate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=leuB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.704e-46
Identity = 95/194 (48.97%), Postives = 131/194 (67.53%), Query Frame = -1
Query:  239 KIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 820
            +IITR AS R++++AF YA+  G ++V+A+HKAN+++KTDG+F     +VA +YP++   +  +D   M L+  P  F  +V  NL+GDI+SD  AGLIGGLGL PS NIGE   AL E VHGSAP IAGKN+ANPTA++L++  ML+HL    +A +I+ A+  T+AEG   T DLGG   T +    I  HL
Sbjct:  136 RIITRTASRRISQFAFQYAQKEGMQKVTAVHKANVLKKTDGIFRDEFYKVASEYPQMEATDYYVDATAMYLITQPQEFQTIVTTNLFGDILSDEAAGLIGGLGLAPSANIGEKN-ALFEPVHGSAPQIAGKNIANPTAMILTTTLMLKHLNKKQEAQKIEKALQKTLAEGLV-TPDLGGKLGTMEMAAEIARHL 327          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH1_KLULA (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Kluyveromyces lactis GN=IDH1 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.226e-46
Identity = 98/203 (48.28%), Postives = 129/203 (63.55%), Query Frame = -1
Query:  239 VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREV-AEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 844
            V GVVESLKI+TR  S R+A +AF +A  + R+ V A+HKANIM+  DGLF     E+ A +YPE+  + +++DN  M  V  P  FDVLV PNLYG I+ ++ + LIGG GL P  N G               DI G+N+ANPTA++LSS  MLRHL L+  ADRI  A    I+EGK  T D+GGS++TS+FT A+ + L
Sbjct:  156 VPGVVESLKIMTRAKSERIARFAFDFALKNNRKSVCAVHKANIMKLGDGLFRNTVNEIGANEYPELDVKNIIVDNASMQAVAKPHQFDVLVTPNLYGSILGNIGSALIGGPGLVPGANFGREYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLRHLGLNAYADRISKATYDVISEGKSTTRDIGGSASTSEFTNAVIEKL 358          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH1_YEAST (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Saccharomyces cerevisiae GN=IDH1 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 3.796e-46
Identity = 96/203 (47.29%), Postives = 130/203 (64.04%), Query Frame = -1
Query:  239 VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK-YPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 844
            V GVVESLK++TR  + R+A +AF +AK + R+ V+A+HKANIM+  DGLF     E+ +K YP+I    +++DN  M  V  P  FDVLV P++YG I+ ++ A LIGG GL    N G               DI G+N+ANPTA++LSS  ML HL L++ A RI  A+  TIAEGK+ T D+GGSS+T+DFT  I + L
Sbjct:  155 VPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYATRISKAVHETIAEGKHTTRDIGGSSSTTDFTNEIINKL 357          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH1_SCHPO (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Schizosaccharomyces pombe GN=idh1 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.884e-45
Identity = 98/202 (48.51%), Postives = 126/202 (62.38%), Query Frame = -1
Query:  239 VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 844
            V GVVESLKIIT   S R+A++AF +A  +GR+ V+ IHKANIM+  DGLF +   +VA  Y  IT +++++DN  M  V  P  FDVLVMPNLYG I+S++ + L+GG G+ P  N G                I G+  ANPTA +LS+  MLRHL L D AD I  A  S I EGK  T DLGGS++T DFT AI + +
Sbjct:  152 VPGVVESLKIITEYKSKRIAQFAFDFALQNGRKSVTCIHKANIMKLADGLFRRTFYDVANGYDAITPKDLIVDNASMQAVSRPQQFDVLVMPNLYGSILSNIGSALVGGPGVIPGANFGRDYALFEPGCRHVGLSITGRGEANPTAAILSACLMLRHLGLKDYADLINAATYSVIEEGKTLTKDLGGSASTGDFTHAILERM 353          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH_THET8 (Isocitrate dehydrogenase [NADP] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=icd PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 4.641e-44
Identity = 92/202 (45.54%), Postives = 136/202 (67.33%), Query Frame = -1
Query:  239 VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGG---SSTTSDFTKAICDHL 835
            V ++LK+I+ + S ++  +AF  A+  GR++V    K+NIM+  +G   +   +VA++YP+I    +++DN    LVK P  F+V+V  N+ GDI+SDL +GLIGGLG  PS NIG   +A+ EAVHGSAP  AGKN+ NPTA+LLS+V MLR+LE    AD I+NA+L T+ EG+  T D+ G    + T+++T+AI  +L
Sbjct:  155 VAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIG-NEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFATADLIENALLYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQNL 355          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_METJA (3-isopropylmalate/3-methylmalate dehydrogenase OS=Methanocaldococcus jannaschii GN=leuB PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 5.310e-40
Identity = 91/200 (45.50%), Postives = 131/200 (65.50%), Query Frame = -1
Query:  251 GVVESLKIITRQASLRVAEYAFHYA---KTHGRE-RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 838
            G+  + ++IT +A  R+  +AF+ A   K  G+E +V+  HKAN+++ TDGLF K   +VAE+Y +I  E+  ID   M ++  P  FDV+V  NL+GDI+SD  AG +GGLGL PS NIG+    L E VHGSAPDIAGK +ANPTA +LS+V MLR+L  ++ AD+++ A+   +A G   T DLGG+  T +  + +
Sbjct:  129 GITIATRVITEKACERIFRFAFNLARERKKMGKEGKVTCAHKANVLKLTDGLFKKIFYKVAEEYDDIKAEDYYIDAMNMYIITKPQVFDVVVTSNLFGDILSDGAAGTVGGLGLAPSANIGDEH-GLFEPVHGSAPDIAGKKIANPTATILSAVLMLRYLGEYEAADKVEKALEEVLALG-LTTPDLGGNLNTFEMAEEV 326          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: AKSF_METJA (Homoisocitrate dehydrogenase OS=Methanocaldococcus jannaschii GN=aksF PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 1.001e-38
Identity = 86/194 (44.33%), Postives = 125/194 (64.43%), Query Frame = -1
Query:  239 KIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 820
            ++ITR+ S R+  +AF YA  + R++VS IHKAN+++ TDGLFL+   E+ + Y  I  ++ ++D+  M L+K+P  FDV+V  N++GDI+SD  + LIGGLGL PS NIG+   AL E VHGSAPDIAGK +ANP A +LS   +  ++   +K D I+ A+   +   K  T DLGG   T D    I +++
Sbjct:  150 RVITRKGSERIIRFAFEYAIKNNRKKVSCIHKANVLRITDGLFLEVFNEIKKHY-NIEADDYLVDSTAMNLIKHPEKFDVIVTTNMFGDILSDEASALIGGLGLAPSANIGDDK-ALFEPVHGSAPDIAGKGIANPMASILSIAMLFDYIGEKEKGDLIREAVKYCLINKKV-TPDLGGDLKTKDVGDEILNYI 340          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LYS12_SCHPO (Probable homoisocitrate dehydrogenase OS=Schizosaccharomyces pombe GN=lys12 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.805e-38
Identity = 87/210 (41.43%), Postives = 120/210 (57.14%), Query Frame = -1
Query:  251 VVESLKIITRQASLRVAEYAFHYAKT------------HGRERVSAIHKANIMQKTDGLFLKCCREVAE---KYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 835
            V E+++ I+ +AS ++ + AF  AK+            H +  V+ IHK+N+M  TDGLF + CR        Y  I  +E ++D+    L + P  FDV+V PNLYGDI+SD  A LIG LGL PS N+G+    ++E VHGSAPDIAG+ +ANP A   S   ML  +   D A  I  A+   + EGK  T DLGG S T++ T A+
Sbjct:  148 VAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGD-NFVMSEPVHGSAPDIAGRGIANPVATFRSVALMLEFMGHQDAAADIYTAVDKVLTEGKVLTPDLGGKSGTNEITDAV 356          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
IDH3B_CAEEL3.318e-5047.26Probable isocitrate dehydrogenase [NAD] subunit be... [more]
IDH1_AJECA2.378e-4847.52Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
LEU3_METTH1.704e-4648.973-isopropylmalate dehydrogenase OS=Methanobacteriu... [more]
IDH1_KLULA2.226e-4648.28Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
IDH1_YEAST3.796e-4647.29Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
IDH1_SCHPO1.884e-4548.51Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
IDH_THET84.641e-4445.54Isocitrate dehydrogenase [NADP] OS=Thermus thermop... [more]
LEU3_METJA5.310e-4045.503-isopropylmalate/3-methylmalate dehydrogenase OS=... [more]
AKSF_METJA1.001e-3844.33Homoisocitrate dehydrogenase OS=Methanocaldococcus... [more]
LYS12_SCHPO3.805e-3841.43Probable homoisocitrate dehydrogenase OS=Schizosac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
back to top