CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH1_COLMA (Isocitrate dehydrogenase [NADP] 1 OS=Colwellia maris GN=icdI PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.520e-21
Identity = 57/171 (33.33%), Postives = 94/171 (54.97%), Query Frame = -1
Query:  371 LKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKY-------------------PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHL 823
            +K ++++ S R+   A  YA  + ++ V+ +HK NIM+ T+G F     E+A E++                    EI  ++V+ D     ++  PA + V+   NL GD +SD  A  +GG+G+ P  N+G+  +A+ EA HG+AP  AGKN  NP +++LS+  MLRH+
Sbjct:  198 IKPVSKEGSQRLVRQAIQYAIDNNKDSVTLVHKGNIMKFTEGAFKDWGYELAIEEFGASLLHGGPWCSLKNPNTGKEIIIKDVIADAMLQQVLLRPAEYSVIATLNLNGDYLSDALAAQVGGIGIAPGANLGD-EVAVFEATHGTAPKYAGKNKVNPGSVILSAEMMLRHM 367          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH_CALNO (Isocitrate dehydrogenase [NADP] OS=Caldococcus noboribetus GN=icd PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 71/222 (31.98%), Postives = 112/222 (50.45%), Query Frame = -1
Query:  239 LKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCC---------------REVAEKY----PE--ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADL----GGSS--TTSDFTKAICDHL 823
            +K I++  + R    A  +A  +G + V+ +HK NIM+ T+G F +                  EV  KY    PE  I   + + DN    ++  P  ++V+V PNL GD ISD    L+GG+G+    ++G+ GIA+AE VHGSAP  AGKN+ NPTA +LS + +L       +   +    +      K  T DL    GG +  +T+++T  + D++
Sbjct:  198 IKPISKWRTQRHVRRAMEWAIRNGYKHVTIMHKGNIMKYTEGAFRQWAYDLILSEFRDYVVTEEEVNTKYGGKAPEGKIIVNDRIADNMLQQIITRPGEYNVIVTPNLNGDYISDEANALVGGIGMAAGLDMGD-GIAVAEPVHGSAPKYAGKNVINPTAEILSGMYLLSDFVGWPEVKLLVEYAVKQAIAHKQVTYDLAREMGGVTPISTTEYTDVLVDYI 418          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH_HELPJ (Isocitrate dehydrogenase [NADP] OS=Helicobacter pylori J99 GN=icd PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.230e-20
Identity = 58/192 (30.21%), Postives = 100/192 (52.08%), Query Frame = -1
Query:  308 LKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY--------------------PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGK 823
            +K I+++ + R+   A  YA  + +  V+ +HK NIM+ T+G F+K    +A+K                      EI  ++++ D     ++  P+ + V+   NL GD ISD  A ++GG+G+ P  N+ +  + + EA HG+AP  AG +  NP +++LS+  MLRH+   + AD I +A+   I   K
Sbjct:  207 IKPISKEGTERLVRKAIEYAIDNDKPSVTFVHKGNIMKYTEGAFMKWGYALAQKEFNAQVIDKGPWCSLKNPKTGKEIIIKDMIADAFLQQILLRPSEYSVIATMNLNGDYISDALAAMVGGIGIAPGANLND-TVGMFEATHGTAPKYAGLDKVNPGSIILSAEMMLRHMGWVEAADLIVSAMEKAIKSKK 397          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH_HELPY (Isocitrate dehydrogenase [NADP] OS=Helicobacter pylori GN=icd PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.606e-20
Identity = 58/192 (30.21%), Postives = 100/192 (52.08%), Query Frame = -1
Query:  308 LKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY--------------------PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGK 823
            +K I+++ + R+   A  YA  + +  V+ +HK NIM+ T+G F+K    +A+K                      EI  ++++ D     ++  P+ + V+   NL GD ISD  A ++GG+G+ P  N+ +  + + EA HG+AP  AG +  NP +++LS+  MLRH+   + AD I +A+   I   K
Sbjct:  207 VKPISKEGTERLVRKAIEYAIDNDKPSVTFVHKGNIMKYTEGAFMKWGYALAQKEFNAQVIDKGPWCSLKNPKNGKEIIIKDMIADAFLQQILLRPSEYSVIATMNLNGDYISDALAAMVGGIGIAPGANLND-TVGMFEATHGTAPKYAGLDKVNPGSIILSAEMMLRHMGWVEAADLIVSAMEKAIKSKK 397          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_ARXAD (3-isopropylmalate dehydrogenase OS=Arxula adeninivorans GN=LEU2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 73/202 (36.14%), Postives = 113/202 (55.94%), Query Frame = -1
Query:  251 VESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK-YPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE-----GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 832
            VE +K ITR A       AF   +++    V ++ KAN++  +  L+ K   E  EK +P++T    +ID+  M+L++NP+  + V+V  N++GDIISD  + + G LGL PS ++           L E  HGSAPD+   N  NP A +LS+  MLR  L L ++AD ++ A+   I  G   TADL G+S+T++   A+
Sbjct:  162 VEEVKRITRMA-------AFLALQSNPPLPVWSLDKANVLASSR-LWRKTVTETIEKEFPQLTLNHQLIDSAAMILIQNPSKMNGVIVTSNMFGDIISDEASVIPGSLGLLPSASLSSLPDKNTAFGLYEPCHGSAPDLP-PNKVNPIATILSAAMMLRLSLNLKEEADAVEKAVSKVIDNG-IVTADLKGASSTTEVGDAV 353          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BACFR (3-isopropylmalate dehydrogenase OS=Bacteroides fragilis GN=leuB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20
Identity = 54/174 (31.03%), Postives = 99/174 (56.90%), Query Frame = -1
Query:  290 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADL 811
            TR    R+ +  F YA    R+ ++ + KAN++  +  L+ +  +E+A +YPE+T + + +DN  M +++ P  FDV+V  N +GDI++D  + + G +GL PS + GE    + E +HGS P   G N+ANP A +LS   +  + +   +   I+ A+ +++ +   RT ++
Sbjct:  160 TRPEIERILKVGFEYAMKR-RKHLTVVDKANVLASSR-LWRQIAQEMAPQYPEVTTDYMFVDNAAMKMIQEPKFFDVMVTENTFGDILTDEGSVISGSMGLLPSASTGE-STPVFEPIHGSWPQAKGLNIANPLAQILSVAMLFEYFDCKAEGALIRKAVDASL-DANVRTPEI 329          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BACFN (3-isopropylmalate dehydrogenase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=leuB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20
Identity = 54/174 (31.03%), Postives = 99/174 (56.90%), Query Frame = -1
Query:  290 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADL 811
            TR    R+ +  F YA    R+ ++ + KAN++  +  L+ +  +E+A +YPE+T + + +DN  M +++ P  FDV+V  N +GDI++D  + + G +GL PS + GE    + E +HGS P   G N+ANP A +LS   +  + +   +   I+ A+ +++ +   RT ++
Sbjct:  160 TRPEIERILKVGFEYAMKR-RKHLTVVDKANVLASSR-LWRQIAQEMAPQYPEVTTDYMFVDNAAMKMIQEPKFFDVMVTENTFGDILTDEGSVISGSMGLLPSASTGE-STPVFEPIHGSWPQAKGLNIANPLAQILSVAMLFEYFDCKAEGALIRKAVDASL-DANVRTPEI 329          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_CANRU (3-isopropylmalate dehydrogenase OS=Candida rugosa GN=LEU2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19
Identity = 69/190 (36.32%), Postives = 103/190 (54.21%), Query Frame = -1
Query:  251 RVAEYAFHYAKTHGR-ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-----EGGIALAEAVHGSAPDI-AGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 793
            R+   A   A  H   + V ++ KAN++  +        R + E++P + ++  +ID+  M+LV+ P   + V++  N++GDIISD  + + G LGL PS ++           L E  HGSAPD+ AGK   NP A +LS+  MLR  L+    ADRI+ A+   I  G   TADLGGSS+T +   AI
Sbjct:  167 RITRMAAFLALQHNPPQTVWSLDKANVLASSRLWRKTVTRVMTEEFPTVPFQHQLIDSAAMILVQKPTKLNGVVLTSNMFGDIISDEASVIPGSLGLLPSASLASLPDTNTAFGLYEPCHGSAPDLPAGK--VNPLACILSAAMMLRLSLDNAAAADRIEQAVREVIDSG-VATADLGGSSSTGEVGDAI 353          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3B_ASPNG (3-isopropylmalate dehydrogenase B OS=Aspergillus niger GN=leu2B PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.813e-19
Identity = 61/192 (31.77%), Postives = 104/192 (54.17%), Query Frame = -1
Query:  251 RVAEYAFHYAKTHGRE-RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--------EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 793
            R+A  A   A  H     V ++ KAN++  +          ++ +YP++     + D+  +++  +P   + V++  N +GD++SD    LIG LG+ PS ++         E    L E  HGSAP IAGKN+ANPTA++L    M R+   + ++A +I++A+ + +  G  RT DLGG+S+T +F  A+
Sbjct:  173 RIARLAAELALRHDPPWPVISLDKANVLASSRLWRRVVENTISVEYPQVKLVHQLADSASLIMATDPRVLNGVILADNTFGDMLSDQAGSLIGTLGVLPSASLDGLPHPGKQEKVRGLYEPTHGSAPTIAGKNIANPTAMILCVSLMFRYSFNMENEARQIEDAVRAVLDRG-LRTPDLGGNSSTQEFGDAV 363          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BUCUL (3-isopropylmalate dehydrogenase (Fragment) OS=Buchnera aphidicola subsp. Uroleucon rurale GN=leuB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.151e-18
Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = -1
Query:  239 FDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSST---TSDFTKAICDHL 589
            FD+L+  NL+GDIISD CA + G +G+ PS +  E    L E   GSAPDIAGKN+ANP A +LS   ++R+ ++L   AD+I  ++ S +  G YRTAD+  +++   T++    I D L
Sbjct:    3 FDILLCSNLFGDIISDECAVITGSIGMLPSASFNEKNFGLYEPAGGSAPDIAGKNIANPIAQILSLSMLVRYGMKLKKIADKIDKSVASALKAG-YRTADISNNNSYLKTNEMGDVISDFL 122          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
IDH1_COLMA5.520e-2133.33Isocitrate dehydrogenase [NADP] 1 OS=Colwellia mar... [more]
IDH_CALNO9.416e-2131.98Isocitrate dehydrogenase [NADP] OS=Caldococcus nob... [more]
IDH_HELPJ1.230e-2030.21Isocitrate dehydrogenase [NADP] OS=Helicobacter py... [more]
IDH_HELPY1.606e-2030.21Isocitrate dehydrogenase [NADP] OS=Helicobacter py... [more]
LEU3_ARXAD2.098e-2036.143-isopropylmalate dehydrogenase OS=Arxula adeniniv... [more]
LEU3_BACFR6.104e-2031.033-isopropylmalate dehydrogenase OS=Bacteroides fra... [more]
LEU3_BACFN6.104e-2031.033-isopropylmalate dehydrogenase OS=Bacteroides fra... [more]
LEU3_CANRU3.029e-1936.323-isopropylmalate dehydrogenase OS=Candida rugosa ... [more]
LEU3B_ASPNG8.813e-1931.773-isopropylmalate dehydrogenase B OS=Aspergillus n... [more]
LEU3_BUCUL1.151e-1842.983-isopropylmalate dehydrogenase (Fragment) OS=Buch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
back to top