CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_PHACH (3-isopropylmalate dehydrogenase OS=Phanerochaete chrysosporium GN=LEU2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.135e-16
Identity = 59/187 (31.55%), Postives = 98/187 (52.41%), Query Frame = -1
Query:  239 VSAIHKANIMQKTDGLFLKCCRE-VAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI------------ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLEL-HDKADRIQNAILSTIAEGK----YRTADLGGSSTTSDFTKAICDHL 742
            V +I KAN++  +  L+ K   E +  ++P++  +  ++D+  M++V NP   + V++  NL+GDI+SD  + + G LGL PS ++    +             + E +HGSAPDIAG+ +ANP   +LS+  +     +    A  I+ A+     +G      RTADLGGSS T D    + + L
Sbjct:  191 VHSIDKANVLASSR-LWRKVATETIQNEFPQLKLDHHLVDSASMLIVANPKKLNGVILTENLFGDILSDESSVIPGSLGLLPSASLAARPLWPNTAHRRSSPRRVYEPIHGSAPDIAGQGIANPIGTILSAAMLCGTRSVWRSPAKAIEAAVEGARRQGDRREGLRTADLGGSSKTKDIGHKVVEIL 376          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH_SYNY3 (Isocitrate dehydrogenase [NADP] OS=Synechocystis sp. (strain PCC 6803) GN=icd PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.115e-13
Identity = 49/145 (33.79%), Postives = 74/145 (51.03%), Query Frame = -1
Query:  242 EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA--EGKYRTADLGGSST-----TSDFTKAICDH 655
            ++   + + D+    +   P  + +L   NL GD +SD  A ++GGLG+ P  NIG+   A+ EA HG+AP  AG +  NP +++LS V ML  +   + AD I+  I + IA  E  Y  A L           S+F +AI  H
Sbjct:  329 KVMVNDRIADSIFQQIQTRPDEYSILATMNLNGDYLSDAAAAVVGGLGMGPGANIGDSA-AIFEATHGTAPKHAGLDRINPGSVILSGVMMLEFMGWQEAADLIKKGIGAAIANREVTYDLARLMEPKVDKPLKCSEFAQAIVSH 472          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: IDH_ANASP (Isocitrate dehydrogenase [NADP] OS=Anabaena sp. (strain PCC 7120) GN=icd PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.456e-13
Identity = 39/116 (33.62%), Postives = 64/116 (55.17%), Query Frame = -1
Query:  308 EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGK 655
            ++   + + D+    +   P  + +L   NL GD +SD  A ++GGLG+ P  NIG+   A+ EA HG+AP  AG +  NP +++LS V ML ++   + AD I+  +   IA  +
Sbjct:  329 KVLVNDRIADSIFQQIQTRPDEYSILATMNLNGDYLSDAAAAIVGGLGMGPGANIGD-SCAVFEATHGTAPKHAGLDRINPGSVILSGVMMLEYMGWQEAADLIKKGLSDAIANSQ 443          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
LEU3_PHACH3.135e-1631.553-isopropylmalate dehydrogenase OS=Phanerochaete c... [more]
IDH_SYNY31.115e-1333.79Isocitrate dehydrogenase [NADP] OS=Synechocystis s... [more]
IDH_ANASP1.456e-1333.62Isocitrate dehydrogenase [NADP] OS=Anabaena sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
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