CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BACHD (3-isopropylmalate dehydrogenase OS=Bacillus halodurans GN=leuB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.699e-34
Identity = 80/198 (40.40%), Postives = 124/198 (62.63%), Query Frame = -1
Query:  245 VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 835
            VV++L + TR    R+   AF  A    +  V+++ KAN+++ +  ++ +   EVA+++PE+T E +++DN  M L++ P  FDVLV  NL+GDI+SD  + + G LG+ PS ++   G  L E +HGSAPDIAGK +ANP A + S   ML++   LH++A  I++AI + + +G YRTAD+      S  TKAI D
Sbjct:  157 VVDTL-LYTRGEMRRIIRKAFELAMVRNKH-VTSVDKANVLESSR-MWREVANEVAQEFPEVTLEHMLVDNAAMQLIRRPKQFDVLVTENLFGDILSDEASMVTGSLGMLPSASLTSDGPGLYEPIHGSAPDIAGKGVANPLATIASCAMMLKYSFGLHEEAKTIEDAIEAVLKQG-YRTADIAKPGEESSSTKAITD 350          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_LISMO (3-isopropylmalate dehydrogenase OS=Listeria monocytogenes GN=leuB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.267e-33
Identity = 79/188 (42.02%), Postives = 118/188 (62.77%), Query Frame = -1
Query:  251 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 811
            TR    R+ E AF  A T  + +V+++ KAN++  +  L+ K   EVA ++P+IT E + ID   M++++ P  FDV+V  NL+GDI+SD  + + G LG+ PS +  E G +L E +HGSAPDIA +N+ANP +++ S   MLR    L  +AD I  A   T+  G + TADLGG++TT+DFT  +
Sbjct:  158 TRAEIERIIEKAFEIAATRNK-KVTSVDKANVLASSK-LWRKIAEEVASRHPDITLEHLYIDAAAMLMIQRPTTFDVIVTENLFGDILSDEASVITGSLGMLPSASHAENGPSLYEPIHGSAPDIANQNIANPMSMISSVSMMLRQSFSLFKEADAIDAAATRTMQAG-FLTADLGGNTTTTDFTNEV 342          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BACHK (3-isopropylmalate dehydrogenase OS=Bacillus thuringiensis subsp. konkukian GN=leuB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.822e-33
Identity = 78/186 (41.94%), Postives = 117/186 (62.90%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTML-RHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 793
            R+  YAF  A    +++V++I KAN+++ +  L+     EVA +YP++  E +++D   M L++NP  FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAGKN ANP A++ S   ML +   L  +   I+ AI + +  GK  TAD+GG+ TT+ FTKA+   +
Sbjct:  162 RIVSYAFQLASKR-KKKVTSIDKANVLESSK-LWRTVTEEVALRYPDVELEHILVDAAAMELIRNPGRFDVIVTENLFGDILSDEASVLAGSLGMLPSASHAEKGPSLYEPIHGSAPDIAGKNKANPIAMMRSVAMMLGQSFGLTREGCAIEEAISAVLKSGKC-TADIGGAETTTSFTKAVMQEM 344          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_PASMU (3-isopropylmalate dehydrogenase OS=Pasteurella multocida GN=leuB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.686e-33
Identity = 78/173 (45.09%), Postives = 111/173 (64.16%), Query Frame = -1
Query:  278 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSS 793
            R+A  AF  A    +  V+++ KAN++  +  L+ +   +VA+ YPE+T + + IDN  M L+K P  FDVL+  N++GDIISD CA + G +G+ PS ++ E G  L E   GSAPDIAGK +ANP A +LS+  MLRH   L+D A  I+NA+ + +AEG +RTADL   S
Sbjct:  173 RIARVAFETAMKRSKH-VTSVDKANVLISSV-LWREVVCDVAKDYPEVTLDHIYIDNATMQLIKQPEFFDVLLCSNIFGDIISDECAMITGSMGMLPSASLNEKGFGLYEPAGGSAPDIAGKGIANPIAQILSAAMMLRHSFNLNDAATAIENAVKNVLAEG-HRTADLADES 342          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_LISMF (3-isopropylmalate dehydrogenase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=leuB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.686e-33
Identity = 77/188 (40.96%), Postives = 119/188 (63.30%), Query Frame = -1
Query:  251 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 811
            TR    R+ E AF  A T  + +V+++ KAN++  +  L+ K   EVA ++P+IT E + +D   M++++ P  FDV+V  NL+GDI+SD  + + G LG+ PS +  E G +L E +HGSAPDIA +N+ANP +++ S   MLR    L ++AD I  A   T+  G + TADLGG+++T+DFT  +
Sbjct:  158 TRAEIERIIEKAFEIAATRNK-KVTSVDKANVLASSK-LWRKIADEVASRHPDITLEHLYVDAAAMLMIQRPTTFDVIVTENLFGDILSDEASVITGSLGMLPSASHAENGPSLYEPIHGSAPDIANQNIANPMSMISSVSMMLRQSFSLFEEADAIDAATARTMQAG-FLTADLGGNTSTTDFTNEV 342          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_HAEIN (3-isopropylmalate dehydrogenase OS=Haemophilus influenzae GN=leuB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.686e-33
Identity = 77/174 (44.25%), Postives = 114/174 (65.52%), Query Frame = -1
Query:  275 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSST 793
            R+A  AF  A    + +V+++ KAN++Q +  L+ +   E+A+ YPE+T E + IDN  M L+K+P +FDVL+  N++GDIISD  A + G +G+ PS ++ E G  L E   GSAPDIAGK +ANP A +LS+  MLR+   L++ AD I++A+   +A G +RTADL   ST
Sbjct:  173 RIARAAFEAAMKRNK-KVTSVDKANVLQSSI-LWRETVTEMAKDYPEVTLEHIYIDNATMQLIKSPESFDVLLCSNIFGDIISDEAAMITGSMGMLPSASLNEEGFGLYEPAGGSAPDIAGKGIANPIAQILSAAMMLRYSFNLNEAADAIESAVQKVLASG-HRTADLADDST 343          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_LISIN (3-isopropylmalate dehydrogenase OS=Listeria innocua GN=leuB PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.814e-33
Identity = 77/188 (40.96%), Postives = 118/188 (62.77%), Query Frame = -1
Query:  251 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 811
            TR    R+ E AF  A T  + +V+++ KAN++  +  L+ K   EVA ++P+IT E + +D   M++++ P  FDV+V  NL+GDI+SD  + + G LG+ PS +  E G +L E +HGSAPDIA +N+ANP +++ S   MLR    L  +AD I  A   T+  G + TADLGG+++T+DFT  +
Sbjct:  158 TRVEIERIIEKAFEIASTRNK-KVTSVDKANVLASSK-LWRKIAEEVASRHPDITLEHLYVDAAAMLMIQRPTTFDVIVTENLFGDILSDEASVITGSLGMLPSASHAENGPSLYEPIHGSAPDIANQNIANPMSMISSVSMMLRQSFSLFKEADAIDAATARTMQAG-FLTADLGGNTSTTDFTNEV 342          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_HAEI8 (3-isopropylmalate dehydrogenase OS=Haemophilus influenzae (strain 86-028NP) GN=leuB PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.814e-33
Identity = 77/174 (44.25%), Postives = 113/174 (64.94%), Query Frame = -1
Query:  275 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSST 793
            R+A  AF  A    + +V+++ KAN++Q +  L+ +   E+A+ YPE+T E + IDN  M L+K P +FDVL+  N++GDIISD  A + G +G+ PS ++ E G  L E   GSAPDIAGK +ANP A +LS+  MLR+   L++ AD I++A+   +A G +RTADL   ST
Sbjct:  173 RIARAAFEAAMKRNK-KVTSVDKANVLQSSI-LWRETVTEMAKDYPEVTLEHIYIDNATMQLIKAPESFDVLLCSNIFGDIISDEAAMITGSMGMLPSASLNEAGFGLYEPAGGSAPDIAGKGIANPIAQILSAAMMLRYSFNLNEAADAIESAVQKVLASG-HRTADLADDST 343          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BACCR (3-isopropylmalate dehydrogenase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=leuB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.287e-33
Identity = 77/186 (41.40%), Postives = 116/186 (62.37%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTML-RHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 793
            R+  YAF  A    +++V++I KAN+++ +  L+     EVA +YP +  E +++D   M L++NP  FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAGKN ANP A++ S   ML +   L  +   I+ A+ + +  GK  TAD+GG+ TT+ FTKA+   +
Sbjct:  162 RIVSYAFQLANKR-KKKVTSIDKANVLESSK-LWRTVTEEVALRYPNVEVEHILVDAAAMELIRNPGRFDVIVTENLFGDILSDEASVLAGSLGMLPSASHAEKGPSLYEPIHGSAPDIAGKNKANPIAMMRSVAMMLGQSFGLTREGYAIEEAVSAVLKSGKC-TADIGGTETTTSFTKAVIQEM 344          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BACC1 (3-isopropylmalate dehydrogenase OS=Bacillus cereus (strain ATCC 10987) GN=leuB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.287e-33
Identity = 78/186 (41.94%), Postives = 117/186 (62.90%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTML-RHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 793
            R+  YAF  A    +++V++I KAN+++ +  L+     EVA +YP++  E +++D   M L++NP  FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAGKN ANP A++ S   ML +   L  +   I+ AI + +  GK  TAD+GG+ TT+ FTKA+   +
Sbjct:  162 RIVSYAFQLASKR-KKKVTSIDKANVLESSK-LWRTVTEEVALRYPDVELEHILVDAAAMELIRNPGRFDVIVTENLFGDILSDEASVLAGSLGMLPSASHAEKGPSLYEPIHGSAPDIAGKNKANPIAMMRSVAMMLGQSFGLTREGCAIEEAISAVLKLGKC-TADIGGTETTTSFTKAVMQEM 344          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
LEU3_BACHD9.699e-3440.403-isopropylmalate dehydrogenase OS=Bacillus halodu... [more]
LEU3_LISMO1.267e-3342.023-isopropylmalate dehydrogenase OS=Listeria monocy... [more]
LEU3_BACHK2.822e-3341.943-isopropylmalate dehydrogenase OS=Bacillus thurin... [more]
LEU3_PASMU3.686e-3345.093-isopropylmalate dehydrogenase OS=Pasteurella mul... [more]
LEU3_LISMF3.686e-3340.963-isopropylmalate dehydrogenase OS=Listeria monocy... [more]
LEU3_HAEIN3.686e-3344.253-isopropylmalate dehydrogenase OS=Haemophilus inf... [more]
LEU3_LISIN4.814e-3340.963-isopropylmalate dehydrogenase OS=Listeria innocu... [more]
LEU3_HAEI84.814e-3344.253-isopropylmalate dehydrogenase OS=Haemophilus inf... [more]
LEU3_BACCR6.287e-3341.403-isopropylmalate dehydrogenase OS=Bacillus cereus... [more]
LEU3_BACC16.287e-3341.943-isopropylmalate dehydrogenase OS=Bacillus cereus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
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