CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:627..1471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BACCZ (3-isopropylmalate dehydrogenase OS=Bacillus cereus (strain ZK / E33L) GN=leuB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.072e-32
Identity = 77/186 (41.40%), Postives = 116/186 (62.37%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTML-RHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 793
            R+  YAF  A    +++V++I KAN+++ +  L+     EVA +YP++  E +++D   M L++NP  FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAGKN ANP A++ S   ML +   L  +   I+ AI + +  GK  T D+GG+ TT+ FTKA+   +
Sbjct:  162 RIVSYAFQLASKR-KKKVTSIDKANVLESSK-LWRTVTEEVALRYPDVELEHILVDAAAMELIRNPGRFDVIVTENLFGDILSDEASVLAGSLGMLPSASHAEKGPSLYEPIHGSAPDIAGKNKANPIAMMRSVAMMLGQSFGLTREGCAIEEAISAVLKSGKC-TEDIGGTETTTSFTKAVMQEM 344          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_YERPS (3-isopropylmalate dehydrogenase OS=Yersinia pseudotuberculosis GN=leuB PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.389e-32
Identity = 77/171 (45.03%), Postives = 109/171 (63.74%), Query Frame = -1
Query:  284 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGG 793
            R+A  AF  A+   R +V++I KAN++Q +  L+ +    +A  YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS + +LR  L   D AD I+ AI   + +G YRTADL G
Sbjct:  174 RIARIAFESARKR-RSKVTSIDKANVLQSSI-LWREVVNGIAADYPDVALSHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLILLLRFSLGKDDAADAIERAINQALEQG-YRTADLAG 341          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_ERWCT (3-isopropylmalate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=leuB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.389e-32
Identity = 77/173 (44.51%), Postives = 113/173 (65.32%), Query Frame = -1
Query:  278 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSS 793
            R+A  AF  A+   R  V++I KAN++Q +  L+ +   EVA+ YP++    + IDN  M L+K+P+ FDV++  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGK++ANP A +LS   +LR+ L   D A+ I+ A+ + +AEG YRTADL  +S
Sbjct:  174 RIAHIAFESARKR-RSIVTSIDKANVLQSSI-LWREIVTEVAKAYPDVKLSHLYIDNATMQLIKDPSQFDVMLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKDIANPIAQILSLALLLRYSLGADDAAEAIEKAVNTALAEG-YRTADLASAS 343          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_MANSM (3-isopropylmalate dehydrogenase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=leuB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.120e-32
Identity = 76/174 (43.68%), Postives = 114/174 (65.52%), Query Frame = -1
Query:  275 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSST 793
            R+A  AF  A    R++V+++ KAN++Q +  L+ +   E+A++YPE+  E + IDN  M L+K P +FDVL+  N++GDIISD  A + G +G+ PS ++ E G  L E   GSAPDIAGK +ANP A +LS+  MLR+   L++ A  I+NA+   +A+G +RT DL  +ST
Sbjct:  173 RIARAAFDAAMKR-RKQVTSVDKANVLQSSI-LWRETVAEIAKEYPEVQVENMYIDNATMQLIKAPESFDVLLCSNIFGDIISDEAAMITGSMGMLPSASLNEEGFGLYEPAGGSAPDIAGKGIANPIAQILSAAMMLRYSFNLNEAATAIENAVQKVLADG-HRTGDLADNST 343          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_ZYMMO (3-isopropylmalate dehydrogenase OS=Zymomonas mobilis GN=leuB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.322e-32
Identity = 78/182 (42.86%), Postives = 110/182 (60.44%), Query Frame = -1
Query:  251 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 793
            R+A   F  A++      S I K+N+++ T  L+     E+A++YP++    + +DN  M LV+ P  FDV+V  NL+GDI+SDL +  +G +GL PS ++   G  L E +HGSAPDIAG   ANP A +LS   MLR+ L+    ADRI+ A+ ST  E   RTADLGG  TTS+   A+
Sbjct:  166 RIARIGFETARSRSGNLCS-IDKSNVLE-TSQLWRTVVLEIAQEYPDVELSHMYVDNAAMQLVRAPDQFDVIVTGNLFGDILSDLASACVGSIGLLPSASLNSEGKGLYEPIHGSAPDIAGLGKANPLATILSGAMMLRYSLKREADADRIEKAV-STALEKGARTADLGGKMTTSEMGNAV 344          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_YERPE (3-isopropylmalate dehydrogenase OS=Yersinia pestis GN=leuB PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 5.322e-32
Identity = 77/171 (45.03%), Postives = 108/171 (63.16%), Query Frame = -1
Query:  284 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGG 793
            R+A  AF  A+   R +V++I KAN++Q +  L+ +    +A  YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS   +LR  L   D AD I+ AI   + +G YRTADL G
Sbjct:  174 RIARIAFESARKR-RSKVTSIDKANVLQSSI-LWREVVNGIAADYPDVALSHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLTLLLRFSLGKDDAADAIERAINQALEQG-YRTADLAG 341          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BACAN (3-isopropylmalate dehydrogenase OS=Bacillus anthracis GN=leuB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.322e-32
Identity = 77/186 (41.40%), Postives = 116/186 (62.37%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTML-RHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 793
            R+   AF  A    +++V++I KAN+++ +  L+     EVA +YP++  E +++D   M L++NP  FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAGKN ANP A++ S   ML +   L  +   I+ AI + +  GK  TAD+GG+ TT+ FTKA+   +
Sbjct:  162 RIVSCAFQLASKR-KKKVTSIDKANVLESSK-LWRIVTEEVALRYPDVELEHILVDAAAMELIRNPGRFDVIVTENLFGDILSDEASVLAGSLGMLPSASHAEKGPSLYEPIHGSAPDIAGKNKANPIAMMRSVAMMLGQSFGLTREGCAIEEAISAVLKSGKC-TADIGGTETTTSFTKAVMQEM 344          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_STAAC (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain COL) GN=leuB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.951e-32
Identity = 78/192 (40.62%), Postives = 114/192 (59.38%), Query Frame = -1
Query:  239 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 811
            TR+   R+   AF  A +  R +++++ K N++  +  L+ K   EV++ YPE+T   +++D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I S I  G+  TADLGG   T+D  + +   L
Sbjct:  158 TREEIERIVHVAFKLAASR-RGKLTSVDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYSMIEHGQ-TTADLGGKLNTTDIFEILSQKL 346          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_STAA3 (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain USA300) GN=leuB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.951e-32
Identity = 78/192 (40.62%), Postives = 114/192 (59.38%), Query Frame = -1
Query:  239 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 811
            TR+   R+   AF  A +  R +++++ K N++  +  L+ K   EV++ YPE+T   +++D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I S I  G+  TADLGG   T+D  + +   L
Sbjct:  158 TREEIERIVHVAFKLAASR-RGKLTSVDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYSMIEHGQ-TTADLGGKLNTTDIFEILSQKL 346          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_VIBCH (3-isopropylmalate dehydrogenase OS=Vibrio cholerae GN=leuB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.078e-32
Identity = 75/172 (43.60%), Postives = 113/172 (65.70%), Query Frame = -1
Query:  281 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADR-IQNAILSTIAEGKYRTADLGGS 793
            R+A  AF  A+   R++V +I KAN++Q +  L+ +   E+A++YP+++   + IDN  M L+K+PA FDV++  N++GDI+SD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS+  MLR+    + A R I+NA+   +A G+  TADL GS
Sbjct:  175 RIARIAFESARLR-RKKVCSIDKANVLQSSI-LWREVVSEIAKEYPDVSLSHMYIDNATMQLIKDPAQFDVMLCSNIFGDILSDECAMITGSMGMLPSASMNESKFGLYEPAGGSAPDIAGKNIANPVAQILSAALMLRYSLGEEAAARDIENAVSQALAAGEL-TADLAGS 343          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
LEU3_BACCZ1.072e-3241.403-isopropylmalate dehydrogenase OS=Bacillus cereus... [more]
LEU3_YERPS2.389e-3245.033-isopropylmalate dehydrogenase OS=Yersinia pseudo... [more]
LEU3_ERWCT2.389e-3244.513-isopropylmalate dehydrogenase OS=Erwinia carotov... [more]
LEU3_MANSM3.120e-3243.683-isopropylmalate dehydrogenase OS=Mannheimia succ... [more]
LEU3_ZYMMO5.322e-3242.863-isopropylmalate dehydrogenase OS=Zymomonas mobil... [more]
LEU3_YERPE5.322e-3245.033-isopropylmalate dehydrogenase OS=Yersinia pestis... [more]
LEU3_BACAN5.322e-3241.403-isopropylmalate dehydrogenase OS=Bacillus anthra... [more]
LEU3_STAAC6.951e-3240.633-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_STAA36.951e-3240.633-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_VIBCH9.078e-3243.603-isopropylmalate dehydrogenase OS=Vibrio cholerae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
back to top