CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_STAA8 (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain NCTC 8325) GN=leuB PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.186e-31
Identity = 78/192 (40.62%), Postives = 113/192 (58.85%), Query Frame = -1
Query:  239 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 811
            TR+   R+   AF  A +  R +++++ K N++  +  L+ K   EV++ YPE+T   + +D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I S I  G+  TADLGG   T+D  + +   L
Sbjct:  158 TREEIERIVHVAFKLAASR-RGKLTSVDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLFVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYSMIEHGQ-TTADLGGKLNTTDIFEILSQKL 346          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_SODGM (3-isopropylmalate dehydrogenase OS=Sodalis glossinidius (strain morsitans) GN=leuB PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.186e-31
Identity = 75/174 (43.10%), Postives = 112/174 (64.37%), Query Frame = -1
Query:  275 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSST 793
            R+A  AF  A+   R +V++I KAN++Q +  L+ K   +VA  YP++    + IDN  M L+K+P+ FDV++  NL+GDI+SD CA + G +G+ PS ++ E G  + E   GSAPDIAGK++ANP A +LS+  +LR+ L L D AD I+ A+   +  G +RTADL G  +
Sbjct:  175 RIARIAFESARKR-RGKVTSIDKANVLQSSI-LWRKVVSQVAPDYPDVALSHLYIDNATMQLIKDPSQFDVMLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGMYEPAGGSAPDIAGKDIANPVAQILSASLLLRYSLGLDDAADAIELAVNQALEAG-HRTADLAGGGS 345          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_ECO57 (3-isopropylmalate dehydrogenase OS=Escherichia coli O157:H7 GN=leuB PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 1.186e-31
Identity = 78/179 (43.58%), Postives = 114/179 (63.69%), Query Frame = -1
Query:  266 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 793
            R+A  AF  A+   R +V++I KAN++Q +  L+ +   E+A +YP+I    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS   +LR+ L+  D A  I+ AI   + EG  RT DL  G ++ ++D
Sbjct:  174 RIARIAFESARKR-RHKVTSIDKANVLQSSI-LWREIVNEIATEYPDIELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADDAASAIERAINRALEEG-IRTGDLARGAAAVSTD 349          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BLOFL (3-isopropylmalate dehydrogenase OS=Blochmannia floridanus GN=leuB PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.186e-31
Identity = 73/169 (43.20%), Postives = 109/169 (64.50%), Query Frame = -1
Query:  290 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 793
            R+A +AF  A+   R+ V++I KAN++  T  L+ K   EVA  YP +  + + +DN  M L++NP+AFDV++ PNL+GDI+SD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS+  + R+ L+L+  A  I+ A+   +  G YRT D+
Sbjct:  175 RIAHFAFKLAQKR-RKHVTSIDKANVLH-TSMLWRKVVSEVASNYPNVHLQHLYVDNASMQLIRNPSAFDVILCPNLFGDILSDECAEINGSIGILPSASLNEHNFGLYEPAGGSAPDIAGKNIANPIAQILSTALLFRYSLKLNHVAITIEKAVYKALTLG-YRTQDI 340          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_THEAQ (3-isopropylmalate dehydrogenase OS=Thermus aquaticus GN=leuB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.549e-31
Identity = 80/186 (43.01%), Postives = 115/186 (61.83%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 793
            RVA+ AF  A+   R  ++++ KAN+++  +  + K   EV + YP++  +   +D   M LVKNPA FDV+V  N++GDI+SDL + L G LGL PS ++G  G  + E VHGSAPDIAGK +ANPTA +LS+  ML H   L + A R++ A+   + E      DLGGS+ T  FT+ +  HL
Sbjct:  164 RVAKVAFEAARKR-RRHLTSVDKANVLEVGE-FWRKTVEEVHKGYPDVALDHQYVDAMAMHLVKNPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARRVEAAVAKALRETP--PPDLGGSAGTQAFTEEVLRHL 344          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_STAAW (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=leuB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.549e-31
Identity = 77/192 (40.10%), Postives = 114/192 (59.38%), Query Frame = -1
Query:  239 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 811
            TR+   R+   AF  A +  R +++++ K N++  +  L+ K   EV++ YPE+T   +++D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I + I  G+  TADLGG   T+D  + +   L
Sbjct:  158 TREEIERIVHVAFKLAASR-RGKLTSVDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYNMIEHGQ-TTADLGGKLNTTDIFEILSQKL 346          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_STAAS (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=leuB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.549e-31
Identity = 77/192 (40.10%), Postives = 114/192 (59.38%), Query Frame = -1
Query:  239 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 811
            TR+   R+   AF  A +  R +++++ K N++  +  L+ K   EV++ YPE+T   +++D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I + I  G+  TADLGG   T+D  + +   L
Sbjct:  158 TREEIERIVHVAFKLAASR-RGKLTSVDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYNMIEHGQ-TTADLGGKLNTTDIFEILSQKL 346          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_STAAR (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=leuB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.549e-31
Identity = 77/192 (40.10%), Postives = 114/192 (59.38%), Query Frame = -1
Query:  239 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 811
            TR+   R+   AF  A +  R +++++ K N++  +  L+ K   EV++ YPE+T   +++D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I + I  G+  TADLGG   T+D  + +   L
Sbjct:  158 TREEIERIVHVAFKLAASR-RGKLTSVDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVYENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYNMIEHGQ-TTADLGGKLNTTDIFEILSQKL 346          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_STAAN (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain N315) GN=leuB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.549e-31
Identity = 77/192 (40.10%), Postives = 114/192 (59.38%), Query Frame = -1
Query:  239 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 811
            TR+   R+   AF  A +  R +++++ K N++  +  L+ K   EV++ YPE+T   +++D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I + I  G+  TADLGG   T+D  + +   L
Sbjct:  158 TREEIERIVHVAFKLAASR-RGKLTSVDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYNMIEHGQ-TTADLGGKLNTTDIFEILSQKL 346          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_STAAM (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=leuB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.549e-31
Identity = 77/192 (40.10%), Postives = 114/192 (59.38%), Query Frame = -1
Query:  239 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 811
            TR+   R+   AF  A +  R +++++ K N++  +  L+ K   EV++ YPE+T   +++D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I + I  G+  TADLGG   T+D  + +   L
Sbjct:  158 TREEIERIVHVAFKLAASR-RGKLTSVDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYNMIEHGQ-TTADLGGKLNTTDIFEILSQKL 346          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
LEU3_STAA81.186e-3140.633-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_SODGM1.186e-3143.103-isopropylmalate dehydrogenase OS=Sodalis glossin... [more]
LEU3_ECO571.186e-3143.583-isopropylmalate dehydrogenase OS=Escherichia col... [more]
LEU3_BLOFL1.186e-3143.203-isopropylmalate dehydrogenase OS=Blochmannia flo... [more]
LEU3_THEAQ1.549e-3143.013-isopropylmalate dehydrogenase OS=Thermus aquatic... [more]
LEU3_STAAW1.549e-3140.103-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_STAAS1.549e-3140.103-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_STAAR1.549e-3140.103-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_STAAN1.549e-3140.103-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_STAAM1.549e-3140.103-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
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