CN188826

Overview
NameCN188826
Unique NameCN188826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:627..1471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_NOVAD (3-isopropylmalate dehydrogenase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=leuB PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 2.022e-31
Identity = 80/191 (41.88%), Postives = 116/191 (60.73%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE-----GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 793
            R+A  AF  A    ++R+ ++ KAN+++ T  L+     EVA+ YPE+  E + +DN  M LV+ P  FDV+V  NL+GDI+SD  +  +G +GL  S ++GE     G   L E +HGSAPDIAGK LANP A +LS+  +LRH L L   ADRI+ A+   +A+G     DLGG++ T++   A+   L
Sbjct:  165 RIAHVAFRAAMGR-KKRLCSVDKANVLE-TSQLWRDVMLEVAKDYPEVALEHMYVDNAAMQLVRAPGNFDVVVTGNLFGDILSDQASMCVGSIGLLASASLGERETEYGTFGLYEPIHGSAPDIAGKGLANPMATILSAAMLLRHSLGLEVAADRIEAAVAKALADG-VLGRDLGGTAGTTEIGDAVLARL 352          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BUCUO (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Uroleucon obscurum GN=leuB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.022e-31
Identity = 72/173 (41.62%), Postives = 113/173 (65.32%), Query Frame = -1
Query:  278 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSS 793
            R+A  AF  A++    +V +I K+N++  +  L+ +  ++V++ YP++    + IDN  M ++KNP  FDVL+ PNL+GDIISD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS   ++R+ + L D AD+I  ++LS + +G YRTAD+  ++
Sbjct:  175 RIAHLAFQLAQSRSH-KVCSIDKSNVLNSSI-LWKEIVQKVSKNYPDVDLSHLYIDNAIMQIIKNPNQFDVLLCPNLFGDIISDECAIITGSIGMLPSASLNEKKFGLYEPAGGSAPDIAGKNIANPIAQILSLSMLVRYGMNLKDIADKIDKSVLSVLKKG-YRTADISNNN 344          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_VIBVY (3-isopropylmalate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=leuB PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.641e-31
Identity = 75/171 (43.86%), Postives = 110/171 (64.33%), Query Frame = -1
Query:  284 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGG 793
            R+A+ AF  A+   R++V +I KAN++Q +  L+ +   E+A+ YP++    + IDN  M L+K+PA FDV++  N++GDIISD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS+  MLR+ L     A  I+NA+   +A G+  TADL G
Sbjct:  175 RIAKIAFESARLR-RKKVCSIDKANVLQSSI-LWREVVEEIAKDYPDVELSHMYIDNATMQLIKDPAQFDVMLCSNIFGDIISDECAMITGSMGMLPSASLNESKFGLYEPAGGSAPDIAGKNIANPVAQILSAALMLRYSLGEEAAAQDIENAVSQALAAGEL-TADLAG 342          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_BACSK (3-isopropylmalate dehydrogenase OS=Bacillus clausii (strain KSM-K16) GN=leuB PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.641e-31
Identity = 78/197 (39.59%), Postives = 123/197 (62.44%), Query Frame = -1
Query:  251 GVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 838
            G V++L + TR    R+   AF +A+T  ++RV ++ KAN+++ +  L+ +   EVA +YP++T   +++DN  M L+++P  FDV+V  NL+GDI+SD  + + G LGL PS ++    + L E VHGSAPDIAG   ANP A +LS+  ML++   L D+A  I+ A+   +A+G  RT D+  +S  +  T AI
Sbjct:  156 GAVDTL-LYTRGEIERIVHQAFQFARTR-KKRVVSVDKANVLESSR-LWREIADEVAREYPDVTLSHMLVDNAAMQLIRDPRQFDVIVTENLFGDILSDEASMITGSLGLLPSASMNTSKVGLFEPVHGSAPDIAGTGAANPLATILSAAMMLQYSFGLADEAKAIEVAVDRVLAQG-VRTKDIAKASENAVSTTAI 348          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_AQUAE (3-isopropylmalate dehydrogenase OS=Aquifex aeolicus GN=leuB PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.641e-31
Identity = 77/186 (41.40%), Postives = 114/186 (61.29%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKA-DRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 793
            R+    F  A+   R++++++ KAN+++    L+ +   E  E YP++  E + IDNC M LV+ P +FDV+V  N++GDI+SD    ++G LG+ PS +IG+   AL E VHGSAPDIAGK +ANP A +LS+  ML++    DKA D I+ AI  T+ +G YRT D+         TK I D +
Sbjct:  171 RIVRKGFEIARKR-RKKLTSVDKANVLE-VSALWRQIVEEEKENYPDVELEHLYIDNCAMQLVRRPTSFDVIVTGNIFGDILSDEAGVVVGSLGMLPSASIGD-RYALYEPVHGSAPDIAGKGIANPIATILSAAMMLKYSFNMDKAHDLIEKAIEETLNQG-YRTPDIYSEGCIKVGTKEITDKI 352          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_STRT2 (3-isopropylmalate dehydrogenase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=leuB PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.450e-31
Identity = 76/186 (40.86%), Postives = 120/186 (64.52%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 793
            R+   AF  A+  G+ +V++I K N++  T  L+ K   EV+ ++P++T E  ++D+  M+++ NPA FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAG+ +ANP +++LS   MLR      + A+ I+NA+  T+ +G   T DLGG ++T++ T AI  +L
Sbjct:  163 RIMRRAFKIAQGRGK-KVTSIDKQNVLA-TSKLWRKVADEVSLEFPDVTLEHQLVDSAAMIMITNPARFDVVVTENLFGDILSDESSVLPGTLGVMPSASHSENGPSLYEPIHGSAPDIAGQGIANPISMILSVAMMLRESFNETEGAELIENAVDKTLNQG-ILTRDLGGQASTAEMTAAIISNL 345          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_STRT1 (3-isopropylmalate dehydrogenase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=leuB PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.450e-31
Identity = 76/186 (40.86%), Postives = 120/186 (64.52%), Query Frame = -1
Query:  239 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 793
            R+   AF  A+  G+ +V++I K N++  T  L+ K   EV+ ++P++T E  ++D+  M+++ NPA FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAG+ +ANP +++LS   MLR      + A+ I+NA+  T+ +G   T DLGG ++T++ T AI  +L
Sbjct:  163 RIMRRAFKIAQGRGK-KVTSIDKQNVLA-TSKLWRKVADEVSLEFPDVTLEHQLVDSAAMIMITNPARFDVVVTENLFGDILSDESSVLPGTLGVMPSASHSENGPSLYEPIHGSAPDIAGQGIANPISMILSVAMMLRESFNETEGAELIENAVDKTLNQG-ILTRDLGGQASTAEMTAAIISNL 345          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_SHISS (3-isopropylmalate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=leuB PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.450e-31
Identity = 77/179 (43.02%), Postives = 114/179 (63.69%), Query Frame = -1
Query:  266 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 793
            R+A  AF  A+   R +V++I KAN++Q +  L+ +   E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS   +LR+ L+  D A  I+ AI   + EG  RT DL  G ++ ++D
Sbjct:  174 RIARIAFESARKR-RHKVTSIDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADDAACAIERAINRALEEG-IRTGDLARGAAAVSTD 349          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_ECOLI (3-isopropylmalate dehydrogenase OS=Escherichia coli (strain K12) GN=leuB PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 3.450e-31
Identity = 77/179 (43.02%), Postives = 114/179 (63.69%), Query Frame = -1
Query:  266 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 793
            R+A  AF  A+   R +V++I KAN++Q +  L+ +   E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS   +LR+ L+  D A  I+ AI   + EG  RT DL  G ++ ++D
Sbjct:  174 RIARIAFESARKR-RHKVTSIDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADDAACAIERAINRALEEG-IRTGDLARGAAAVSTD 349          
BLAST of CN188826 vs. ExPASy Swiss-Prot
Match: LEU3_VIBVU (3-isopropylmalate dehydrogenase OS=Vibrio vulnificus GN=leuB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.506e-31
Identity = 75/171 (43.86%), Postives = 110/171 (64.33%), Query Frame = -1
Query:  284 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGG 793
            R+A+ AF  A+   R++V +I KAN++Q +  L+ +   E+A+ YP++    + IDN  M L+K+PA FDV++  N++GDIISD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS+  MLR+ L     A  I+NA+   +A G+  TADL G
Sbjct:  175 RIAKIAFESARLR-RKKVCSIDKANVLQSSI-LWREVVEELAKDYPDVELSHMYIDNATMQLIKDPAQFDVMLCSNIFGDIISDECAMITGSMGMLPSASLNESKFGLYEPAGGSAPDIAGKNIANPVAQILSAALMLRYSLGEEAAAQDIENAVSQALAAGEL-TADLAG 342          
The following BLAST results are available for this feature:
BLAST of CN188826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
LEU3_NOVAD2.022e-3141.883-isopropylmalate dehydrogenase OS=Novosphingobium... [more]
LEU3_BUCUO2.022e-3141.623-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_VIBVY2.641e-3143.863-isopropylmalate dehydrogenase OS=Vibrio vulnific... [more]
LEU3_BACSK2.641e-3139.593-isopropylmalate dehydrogenase OS=Bacillus clausi... [more]
LEU3_AQUAE2.641e-3141.403-isopropylmalate dehydrogenase OS=Aquifex aeolicu... [more]
LEU3_STRT23.450e-3140.863-isopropylmalate dehydrogenase OS=Streptococcus t... [more]
LEU3_STRT13.450e-3140.863-isopropylmalate dehydrogenase OS=Streptococcus t... [more]
LEU3_SHISS3.450e-3143.023-isopropylmalate dehydrogenase OS=Shigella sonnei... [more]
LEU3_ECOLI3.450e-3143.023-isopropylmalate dehydrogenase OS=Escherichia col... [more]
LEU3_VIBVU4.506e-3143.863-isopropylmalate dehydrogenase OS=Vibrio vulnific... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188826 ID=CN188826; Name=CN188826; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTAATTTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACAC
TCTGTGCTGAACAGTTTCATCAGAAAAAAACTTCTAAATAGTCACCAAGG
TGATGGGTCTTATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGAAAA
AAACAAATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTT
GAACACGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCA
GATTGCCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAG
TTCGATACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTA
TCAGCCTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAA
CAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTG
AACCATGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAA
CTAGGTGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAAT
GATGTCACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGAT
TCTTCACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTT
ATCTCAGGGTACTTCTCGGCAACCTCACGACAACACTTCAAAAAAAGCCC
ATCAGTTTTCTGCATAATATTTGCTTTGTGTATTGCAGATACTCTTTCTC
TTCCATGTGTCTTCGCATAGTGAAACGCATATTCAGCAACTCTCAAACTA
GCCTGACGAGTAATGATTTTGAGACTTTCAACCACACCTCTCACCAC
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