CX044140

Overview
NameCX044140
Unique NameCX044140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length414
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX044140 vs. ExPASy Swiss-Prot
Match: RUXG_SCHPO (Probable small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe GN=smg1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.100e-13
Identity = 37/79 (46.84%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:   52 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDIGMVVIRGNSVVTVEALEPVS 282
            MS++G P DLKKY+D+++ ++LN +R + G LRG+D F+N+V+++++E  V+G EK  IG V IRGNSV+ +E L+ ++
Sbjct:    1 MSKAGAP-DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG-EKVKIGSVAIRGNSVIMIETLDKMT 77
The following BLAST results are available for this feature:
BLAST of CX044140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RUXG_SCHPO2.100e-1346.84Probable small nuclear ribonucleoprotein G OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_15F06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15F06-K11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044140 ID=CX044140; Name=CX044140; organism=Citrus sinensis; type=EST; length=414bp
CTTTGCTTTCTTCCGTGCTTTTTCTCTGAAACGATCCGCTAGGCTTCGAC
AATGAGCAGATCAGGCCAGCCTCCGGATCTCAAGAAGTACATGGATAAGA
AGCTTCAGATCAAGCTCAATGCTAATAGGATGATTGTTGGAACACTTCGT
GGATTTGATCAGTTTATGAATCTTGTGATTGACAACACAGTTGAGGTCAA
TGGCAATGAGAAAAATGATATAGGGATGGTGGTTATCAGAGGGAATAGTG
TAGTCACTGTTGAAGCCCTTGAACCGGTAAGCAAATCACAGTGACGTGGT
TTGCCACTGGGGTCGATGTAATGTGCTTTCTGATCTTCTTTGTGTACTAT
TATGAATATTAAGGCTGTTAGTATGCAATGGGAGATGTTTCATGCTGTTG
TACCTGAGAAAAAA
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