CN188823

Overview
NameCN188823
Unique NameCN188823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188823_ssr62 microsatellite CN188823_ssr62:62..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1957 contig Csv1_Contig1957:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188823 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.720e-26
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 2
Query:  239 DPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 541
            DPFA+A   +        VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CNGTV++ PE G+V+QLQGDQR+N+  +L + G+ K + +K+HGF
Sbjct:   10 DPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110          
BLAST of CN188823 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 7.914e-26
Identity = 59/101 (58.42%), Postives = 76/101 (75.25%), Query Frame = 2
Query:  239 DPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 541
            DPFA+   +D  A   + +HIR+QQRNGRK+LTTVQGL +EF   +IL+ LKK+F CNGT+V+D +LG+VIQLQGDQR  V  FL Q   ++K+ IKIHGF
Sbjct:   11 DPFADTGDDD--AQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109          
BLAST of CN188823 vs. ExPASy Swiss-Prot
Match: EIF1_CHICK (Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus gallus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.070e-22
Identity = 46/79 (58.23%), Postives = 63/79 (79.75%), Query Frame = 2
Query:  305 VQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 541
            +QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:    1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 79          
The following BLAST results are available for this feature:
BLAST of CN188823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_DROME2.720e-2653.47Protein translation factor SUI1 homolog OS=Drosoph... [more]
SUI1_SCHPO7.914e-2658.42Protein translation factor sui1 OS=Schizosaccharom... [more]
EIF1_CHICK1.070e-2258.23Eukaryotic translation initiation factor 1 (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188823 ID=CN188823; Name=CN188823; organism=Citrus sinensis; type=EST; length=746bp
GCGGTAAGCCCGTCTGCACTTATATAACGACATTATAACCCAAACACAAT
CCTTATCTCTGTCTCTCTCTCGCTTCTCTTGTTTCCGCTCTCGTAAGGCA
GTTTGATTCGCAATCTTCCTCTTAAGCTAAGAGCAATTTAAGTGAATTGA
AGCCAATTTCTTGCTGGTTACGGACTCTTTGACACTCCAACAACCAAGTT
TCATGTCTGAATTTGACACCCAGATTCCATCTGCCTTTGATCCCTTTGCT
GAGGCAAATGCTGAGGACTCAGGTGCTGGTTCAAAAGATTATGTGCATAT
TCGCGTGCAGCAACGTAATGGGAGGAAAAGCCTGACAACTGTGCAAGGGT
TGAAGAAAGAATTCAGCTACAACAAGATTCTCAAGGACCTCAAGAAAGAG
TTCTGCTGTAATGGTACTGTTGTACAGGACCCTGAGTTAGGCCAGGTCAT
ACAGCTTCAGGGTGACCAGAGGAAGAATGTGTCCACCTTCCTCGTTCAGG
CTGGTATTGTGAAGAAGGAATTCATCAAAATTCATGGTTTCTAAATAGTG
GGAGCCAAGTTGCTATATGTTGTTTATCCATCTCCAACTATTGGTAGCAA
GAAGTATATGATCTATATATTAATTTATTATCGACTGTTGTGTAATGTAA
CGCTGTCCAAACAAAAAGTTTGATGCAAGCTTGCTTGTGCGTTTAAACTT
TTTAGTTTGTAGTAGTGTTCTTTTGTTTGGGAATATTATGGTTTCT
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