CN181971

Overview
NameCN181971
Unique NameCN181971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181971 vs. ExPASy Swiss-Prot
Match: Y1061_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At1g50610 OS=Arabidopsis thaliana GN=At1g50610 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 55/167 (32.93%), Postives = 86/167 (51.50%), Query Frame = -3
Query:  187 IDLHSNQITGSLS-----SIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPS-SISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQGRPYSIFPGSAYAHNLCLCGKPLPPC 669
            + L    +TG L+      + N RT SF+       N+F+G +P+     SLK L + +N+ +G IP+ +   +  L+ + +  N   GTIP+SL  L  L  L ++ N   G+IP+     + L+ A+F  N L G IP+    ++ PGS +A N  LC  PL PC
Sbjct:   93 LQLEGMGLTGKLNLDPLVPMKNLRTISFMN------NNFNGPMPQVKRFTSLKSLYLSNNRFSGEIPADAFLGMPLLKKILLANNAFRGTIPSSLASLPMLLELRLNGNQFQGQIPS--FQQKDLKLASFENNDLDGPIPESL-RNMDPGS-FAGNKGLCDAPLSPC 249          
BLAST of CN181971 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = -3
Query:  271 LASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEI 678
            +  I +    ++GSL   + N  S  L  LDVS N+ +G +P +     L  L+   N   G++P S+S + +L  L++ RN + G +      L KL+ +D+S N LTGK+P S   + GL+  + + N+  G I
Sbjct:   73 VTEIKVSGRGLSGSLGYQLGNLKS--LTYLDVSKNNLNGNLP-YQLPDKLTYLDGSENDFNGNVPYSVSLMNDLSYLNLGRNNLNGELSDMFQKLPKLETIDLSSNQLTGKLPQSFANLTGLKTLHLQENQFKGSI 205          
BLAST of CN181971 vs. ExPASy Swiss-Prot
Match: Y5516_ARATH (Probable receptor kinase At5g05160 OS=Arabidopsis thaliana GN=At5g05160 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 58/169 (34.32%), Postives = 81/169 (47.93%), Query Frame = -3
Query:  181 SSFLEALDVSGNHFSGEIPEFTEGL--SLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPT-SLGLLSK-LQWLDVSVNSLTGKIPTSL----------------------LGIRGLRHANFRANRLCGEIPQGRPYSIFPGSAYAHNLCLCGKPLPPCRG 609
            +S + A+ + G    G IP  T G   +LKVL++ SN + G +PS I +L  LE L +Q N  +G + T SL  +SK L  LD+S NSL+G IP+ L                      L +  ++  N   N L G IP+    S  P  ++  N  LCG PL  C G
Sbjct:   72 TSRVVAVRLPGVGLYGSIPPATLGKLDALKVLSLRSNSLFGTLPSDILSLPSLEYLYLQHNNFSGELTTNSLPSISKQLVVLDLSYNSLSGNIPSGLRNLSQITVLYLQNNSFDGPIDSLDLPSVKVVNLSYNNLSGPIPEHLKKS--PEYSFIGNSLLCGPPLNACSG 238          
BLAST of CN181971 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 40/137 (29.20%), Postives = 69/137 (50.36%), Query Frame = -3
Query:  268 LASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIP 678
            + +I L    + G +     N T   L  +D+  N  SG IP     + L++L +  N+++G  P  +  +  L  + ++ N   G +P +LG L  L+ L +S N++TG+IP SL  ++ L +     N L G+IP
Sbjct:   90 VTNIQLRGFNLRGIIPPEFGNLTR--LTEIDLVLNFLSGTIPTTLSQIPLEILAVTGNRLSGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGRIPESLSNLKNLTNFRIDGNSLSGKIP 224          

HSP 2 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 61/186 (32.80%), Postives = 83/186 (44.62%), Query Frame = -3
Query:  163 PDGLASIDLHSNQITGS-LSSIINNRTSSFLEALDV--SGNHFSGEIPEFTEGL-SLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQGRPYSIFPGSAYAHNL-------CLCGKPLPPCRGKNQANL 687
            P  L+ I L    +TG+ LS     +        DV    N F+G++P     L SLK L I SN ITG IP S+SNL  L    I  N ++G IP  +G  ++L  LD+   S+ G IP S+  ++ L     R   L G      P S FP      N+       CL  +P+P   G +   L
Sbjct:  129 PTTLSQIPLEILAVTGNRLSGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGRIPESLSNLKNLTNFRIDGNSLSGKIPDFIGNWTRLVRLDLQGTSMEGPIPASISNLKNL--TELRITDLRG------PTSPFPDLQNMTNMERLVLRNCLIREPIPEYIGTSMTML 306          
BLAST of CN181971 vs. ExPASy Swiss-Prot
Match: Y2278_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g02780 OS=Arabidopsis thaliana GN=At2g02780 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 46/139 (33.09%), Postives = 72/139 (51.80%), Query Frame = -3
Query:  265 LASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGL-SLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQ 678
            L ++ L S  I+GSLS  I  + S  LE+L++S N  SG+IPE    L +LK L +  N   G +   +  L  L+ LD+  N++   +P+   L SKL  + +  NS   KIP  +  +  L+  +  +N   G IP+
Sbjct:  107 LKTLSLTSLGISGSLSPKIITKLSPSLESLNLSSNFISGKIPEEIVSLKNLKSLVLRDNMFWGFVSDDLRGLSNLQELDLGGNKLGPEVPS---LPSKLTTVSLKNNSFRSKIPEQIKKLNNLQSLDLSSNEFTGSIPE 242          
BLAST of CN181971 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 37/111 (33.33%), Postives = 61/111 (54.95%), Query Frame = -3
Query:  268 LEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIP 600
            L+ +D+S N+ +G IP     L L  + +  N++TG IP    N+  L  L ++ NQ++G +P  LG L  +Q + +S N+  G+IP++   +  LR      N+L G IP
Sbjct:   89 LQEIDLSRNYLNGSIPPEWGVLPLVNIWLLGNRLTGPIPKEFGNITTLTSLVLEANQLSGELPLELGNLPNIQQMILSSNNFNGEIPSTFAKLTTLRDFRVSDNQLSGTIP 199          
BLAST of CN181971 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 45/160 (28.12%), Postives = 82/160 (51.25%), Query Frame = -3
Query:  268 NIKLSNNQLK-FDVSE-IRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIP 741
            ++++ NN  K +++ E +R    L +   +S  ++GSL   +       L  L ++ N+  GE+P    G  ++ L +   K+TG I + + N+  L+ + +  N+ +G +P   G L +L+ L +  NS TG +P SLL +  L+  N   N L G +P
Sbjct:  139 SVEIDNNPFKSWEIPESLRNASALQNFSANSANVSGSLPGFLGPDEFPGLSILHLAFNNLEGELPMSLAGSQVQSLWLNGQKLTGDI-TVLQNMTGLKEVWLHSNKFSGPLPDFSG-LKELESLSLRDNSFTGPVPASLLSLESLKVVNLTNNHLQGPVP 296          
BLAST of CN181971 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 50/159 (31.45%), Postives = 80/159 (50.31%), Query Frame = -3
Query:  256 LSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQGRP 732
            +SNN L  D+   + P  L  ++L +NQ TGS    I+      L+ L+++ N       +FT+  SL +L++ SN   G +P++ S+L   + + +Q NQ +GTI     L   L+ L+++ N  TG IP SL GI   +  N   +      P G P
Sbjct:  102 MSNNNLGGDLP-YQLPPNLERLNLANNQFTGSAQYSISMMAP--LKYLNLAHNQLKQLAIDFTKLTSLSILDLSSNAFIGSLPNTCSSLTSAKSIYLQNNQFSGTIDILATL--PLENLNIANNRFTGWIPDSLKGINLQKDGNLLNSGPAPPPPPGTP 255          
The following BLAST results are available for this feature:
BLAST of CN181971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
Y1061_ARATH3.204e-1132.93Probably inactive leucine-rich repeat receptor-lik... [more]
SRF4_ARATH3.204e-1131.62Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
Y5516_ARATH4.185e-1134.32Probable receptor kinase At5g05160 OS=Arabidopsis ... [more]
Y5344_ARATH4.185e-1129.20Probable LRR receptor-like serine/threonine-protei... [more]
Y2278_ARATH4.185e-1133.09Probable LRR receptor-like serine/threonine-protei... [more]
Y1534_ARATH4.185e-1133.33Probable LRR receptor-like serine/threonine-protei... [more]
TMK1_ARATH4.185e-1128.13Probable receptor protein kinase TMK1 OS=Arabidops... [more]
SRF7_ARATH7.138e-1131.45Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181971 ID=CN181971; Name=CN181971; organism=Citrus sinensis; type=EST; length=743bp
TTTTTTTTTCATAATAATCATTATTGATAAAATTAAACTGAAAATTATAA
GTAGATAAAAAATGAACTATGACTGTTGCAGTAAACAGAACCTATTCCCT
CGTGTTACGATGCTCACATGGTATGAGCATGTCTTTGGCTACTGAGTCAG
CATTCACTGGCCCAAATTTGCTTGATTCTTTCCTCTACAAGGTGGCAATG
GCTTGCCACATAAGCACAGATTGTGAGCATAAGCTGATCCAGGAAAGATG
CTGTAAGGTCTCCCTTGTGGGATCTCTCCACATAGTCTGTTTGCCCTGAA
GTTTGCATGTCTCAGTCCTCGAATCCCCAACAAGCTGGTTGGAATTTTTC
CTGTGAGTGAATTGACTGATACATCAAGCCATTGAAGCTTTGACAATAGC
CCTAAGCTTGTAGGGATGGTGCCTGCTATCTGGTTCCTTTGAATATCAAG
CATTTCAAGTTCAATAAGATTTGATATTGAACTTGGAATGTGGCCTGTAA
TCTTGTTGCTTCCTATGTTCAGCACTTTCAAGCTCAACCCTTCTGTGAAT
TCTGGAATCTCACCCGAAAAGTGATTGCCTGACACATCTAAAGCCTCCAA
AAAGCTGCTTGTCCTGTTGTTTATGATGCTAGAGAGAGACCCTGTAATCT
GATTAGAGTGCAGATCAATAGAAGCAAGCCCGTCCGGGAATCTAATCTCT
GAAACATCAAACTTCAACTGGTTGTTCGAAAGTTTGATGTTCT
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