CN188821

Overview
NameCN188821
Unique NameCN188821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMAL1_BOVIN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Bos taurus GN=SMARCAL1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.629e-24
Identity = 61/160 (38.12%), Postives = 98/160 (61.25%), Query Frame = -1
Query:  275 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVS-SSQIRSSPAKQKTLDSFLKRCNNVDDSE 751
            +LDAI K   +K+V  IRIDG T  A R+   + F     ++  VLS+ A  +GLT ++A  V+F EL W PG L+QAEDR HRIGQ+SSV+++YL+A  T DD +W +++ K++ LG+      N  E++ ++   S  +KQ+ + +  ++    D ++
Sbjct:  734 VLDAITKELERKRVQHIRIDGSTSSADRETSASSFSCPRALRG-VLSITAANMGLTFSSADLVVFGELFWNPGVLMQAEDRVHRIGQLSSVSIHYLVARGTADDYLWPLIQEKIKVLGEAGLSETNFSEMTEATDYFSKDSKQQKIYNLFQKSFEEDGND 892          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_CRYNE (Putative DNA helicase INO80 OS=Cryptococcus neoformans GN=INO80 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.140e-19
Identity = 54/158 (34.18%), Postives = 89/158 (56.33%), Query Frame = -1
Query:  311 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHEN-----------SLEVSSSQIRSSPAKQKTLDS 751
            M+D I +  + ++   +R+DG +P A R+ +VT +Q   D+    LS +AGG+G+ LTAA TVIF +  W P    QA DRAHR+GQ   V VY L+A  T+++ +  + R K +++  V+ G ++           SL +   ++  S AK+K  ++
Sbjct: 1481 MMDLIEEYLIFRQYKYLRLDGSSPIAERRDMVTSWQTNPDIFVFCLSTRAGGLGINLTAADTVIFYDHDWNPSSDAQAMDRAHRVGQTKQVTVYRLVARGTIEERILQMARGK-KDIQDVVVGTKSVSDVAKPSEIVSLFMDDEELAESVAKRKQAEA 1637          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_HUMAN (Putative DNA helicase INO80 complex homolog 1 OS=Homo sapiens GN=INO80 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.332e-19
Identity = 55/168 (32.74%), Postives = 90/168 (53.57%), Query Frame = -1
Query:  248 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQKLKYRK 751
            M+D + +  + +K   +R+DG +  + R+ +V +FQ ++D+   +LS +AGG+G+ LTAA TVIF +  W P    QA DRAHR+GQ   V VY L+   T+++ +    + K E    V+ G            +    K K + S L     +DD E ++KL+ R+
Sbjct: 1129 MIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG---------GNFKPDTLKPKEVVSLL-----LDDEELEKKLRLRQ 1282          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_MOUSE (Putative DNA helicase INO80 complex homolog 1 OS=Mus musculus GN=Ino80 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.658e-19
Identity = 55/168 (32.74%), Postives = 90/168 (53.57%), Query Frame = -1
Query:  248 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQKLKYRK 751
            M+D + +  + +K   +R+DG +  + R+ +V +FQ ++D+   +LS +AGG+G+ LTAA TVIF +  W P    QA DRAHR+GQ   V VY L+   T+++ +    + K E    V+ G            +    K K + S L     +DD E ++KL+ R+
Sbjct: 1132 MIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG---------GNFKPDTLKPKEVVSLL-----LDDEELEKKLRLRQ 1285          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: FFT2_SCHPO (Uncharacterized ATP-dependent helicase fft2 OS=Schizosaccharomyces pombe GN=fft2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.808e-18
Identity = 44/114 (38.60%), Postives = 72/114 (63.16%), Query Frame = -1
Query:  410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751
            MLD + ++    K+  +R+DG T    RQ ++ +F +++DV   +LS KAGG G+ L  A+ VI  + S+ P D +QAEDRAHR+GQV  V V  L+ ++T+++ +  +  +KL
Sbjct:  952 MLDILEQVLDTLKISYVRLDGSTQVEVRQDIIDQFHKEEDVTVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDNTIEEYIQKLANTKL 1065          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_USTMA (Putative DNA helicase INO80 OS=Ustilago maydis GN=INO80 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.667e-18
Identity = 44/115 (38.26%), Postives = 73/115 (63.48%), Query Frame = -1
Query:  407 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLE 751
            M+D + +  + ++   +R+DG +  + R+ +VT++Q K ++   +LS +AGG+G+ LTAA TVIF +  W P +  QA DRAHR+GQ   V VY L+   T+D+ +  + R+K E
Sbjct: 1607 MIDLMEEYLIYRQYKYLRLDGASKISDRRDMVTDWQTKPELFIFLLSTRAGGLGINLTAADTVIFYDHDWNPSNDSQAMDRAHRLGQTKQVTVYRLITKGTIDERIVRLARNKKE 1721          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: MOT1_YEAST (TATA-binding protein-associated factor MOT1 OS=Saccharomyces cerevisiae GN=MOT1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.789e-18
Identity = 50/130 (38.46%), Postives = 73/130 (56.15%), Query Frame = -1
Query:  371 MLDAIHKLFLKK---KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS 751
            MLD +     KK    V  +R+DG   P  RQ +V +F E   +   +L+ K GG+GL LT A TVIF E  W P + +QA DRAHRIGQ   VNVY ++   T+++ +  + + K+ N+   +   +NS
Sbjct: 1658 MLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKM-NIASTVVNQQNS 1786          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_DROME (Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.255e-18
Identity = 56/168 (33.33%), Postives = 88/168 (52.38%), Query Frame = -1
Query:  248 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQKLKYRK 751
            M+D + +    +K   +R+DG +  ++R+ +V +FQ + D+   +LS +AGG+G+ LTAA TVIF +  W P    QA DRAHR+GQ   V VY L+   T+++ +    R K E    V+ G            +    K K + S L     +DD E +  +KYR+
Sbjct: 1184 MIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISG---------GNFKPDTLKPKEVVSLL-----LDDEEIE--MKYRQ 1335          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: BTAF1_HUMAN (TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.393e-17
Identity = 48/132 (36.36%), Postives = 71/132 (53.79%), Query Frame = -1
Query:  365 MLDAIHKLFLKK---KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLE 751
            MLD +    LK     V  +R+DG  PP  R ++V+ F     +   +L+   GG+GL LT A TV+F E  W P   +QA DRAHRIGQ   VNVY L+   T+++ +  + + K+     V+    +SL+
Sbjct: 1656 MLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQ 1787          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_ASHGO (Putative DNA helicase INO80 OS=Ashbya gossypii GN=INO80 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.820e-17
Identity = 51/147 (34.69%), Postives = 82/147 (55.78%), Query Frame = -1
Query:  311 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDS 751
            M+D I +    ++   IR+DG +    R+ LV ++Q K D+   +LS +AGG+G+ LT+A TVIF +  W P    QA DRAHR+GQ   V VY LL   T+++ + D  + K      V++G     +   + +++  A  KTL++
Sbjct: 1268 MMDLIEEYLTYRQYKHIRLDGSSKLEDRRDLVHDWQTKSDIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLLIKGTIEERMRDRAKQKEHVQQVVMEG-----KTKENNVQTITANGKTLEN 1409          
The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SMAL1_BOVIN7.629e-2438.13SWI/SNF-related matrix-associated actin-dependent ... [more]
INO80_CRYNE1.140e-1934.18Putative DNA helicase INO80 OS=Cryptococcus neofor... [more]
INO80_HUMAN4.332e-1932.74Putative DNA helicase INO80 complex homolog 1 OS=H... [more]
INO80_MOUSE5.658e-1932.74Putative DNA helicase INO80 complex homolog 1 OS=M... [more]
FFT2_SCHPO2.808e-1838.60Uncharacterized ATP-dependent helicase fft2 OS=Sch... [more]
INO80_USTMA3.667e-1838.26Putative DNA helicase INO80 OS=Ustilago maydis GN=... [more]
MOT1_YEAST4.789e-1838.46TATA-binding protein-associated factor MOT1 OS=Sac... [more]
INO80_DROME6.255e-1833.33Putative DNA helicase Ino80 OS=Drosophila melanoga... [more]
BTAF1_HUMAN1.393e-1736.36TATA-binding protein-associated factor 172 OS=Homo... [more]
INO80_ASHGO1.820e-1734.69Putative DNA helicase INO80 OS=Ashbya gossypii GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bp
CTTTTTTTATAAACGATGTTATTGTATTCATCTACAAAACAGAGGAATAT
CCCTATAAAGCCTCATGTCAGTATTACACTTACACTGCCTGTCATATAGA
GATTCTTGTCTCTCACTAATTTGGAGTAGTAATCAATGTTCTCTGAGGCT
CCGCATATCAAAAGGGCACATTTTCATGTGTCTGTGTACATGTGATGCAT
AGACCGACGCATCTCAAAATATACATTTTATAGTGTGTGGATTAGAGCTT
TCGGTATTTTAGCTTCTGCTGATGTTCAGAGTCATCCACATTGTTGCAAC
GCTTCAGGAAGGAGTCGAGTGTTTTCTGCTTTGCAGGGCTGCTTCTTATT
TGACTGCTTGAAACTTCCAAACTATTTTCATGACCATCAAGCACCTGTCC
CAAATTTTCCAACTTGCTCCGAACAACATCCCATACTATGTCATCAACTG
TGTCATTTGCCAGTAGGTAGTATACATTTACGGAAGATACCTGGCCGATC
CTGTGAGCACGATCTTCAGCTTGAATGAGATCACCTGGAGTCCATGACAA
CTCCGCGAAAATAACAGTGCTTGCAGCCGTTAATGTTAAACCAACACCTC
CGGCTTTCATAGATAGCACTGCTGCCTTGACATCATCTTTCTCCTGAAAT
TCAGTAACCAAAGCTTGTCTTGAAGCAGGAGGGGTACCCCCATCAATCCG
AATGCAATGCACTTTCTTCTTAAGAAAAAGTTTATGTATTGCATCAAGCA
TGGGCTG
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