CN188821

Overview
NameCN188821
Unique NameCN188821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD1_CHICK (Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus GN=CHD1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 44/155 (28.39%), Postives = 79/155 (50.97%), Query Frame = -1
Query:  302 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS----LEVSSSQIRSSPAKQKTLDSFLK 751
            MLD + +    ++    R+DG      R+  +  F  E  +    +LS +AGG+G+ L +A TV+  +  W P + +QA+ RAHRIGQ   VN+Y L+   +V++ + +  + K+     V+   + +    L   S+   S+P  ++ L + LK
Sbjct:  812 MLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAILK 966          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: YWQA_BACSU (Uncharacterized ATP-dependent helicase ywqA OS=Bacillus subtilis GN=ywqA PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 40/117 (34.19%), Postives = 65/117 (55.56%), Query Frame = -1
Query:  347 IDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQI 697
            ++G      R  LV +FQ K+     +LS+KAGG GL LTAA+ VI  +  W P    QA DRA+RIGQ   V+V+ ++   T+++ +  ++ SK     Q++       E+S+ ++
Sbjct:  796 LNGSLSKQERDTLVEKFQRKE-YPTLILSLKAGGTGLNLTAANHVIHYDRWWNPAVENQATDRAYRIGQERFVHVHKMITTGTIEEKIDVMLESKQTLNDQIIQSENWITELSTQEL 911          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD9_HUMAN (Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 44/131 (33.59%), Postives = 70/131 (53.44%), Query Frame = -1
Query:  368 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL---ENLGQVLDGHENSL 748
            LD +    + K+    RIDG      RQA +  F + D D    +L  +AGG+G+ LTAA T I  +  W P + +QA+ R HRIGQ  +V VY L+  ++ +  ++D    KL   + + Q + G E+++
Sbjct: 1211 LDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1341          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RAD5_CANGA (DNA repair protein RAD5 OS=Candida glabrata GN=RAD5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 40/124 (32.26%), Postives = 69/124 (55.65%), Query Frame = -1
Query:  374 IHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDV--KAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHEN 739
            +++++   K+   + DG      R A++ +F+ KD    K  +LS+KAGGVGL LT AS     +  W+P    QA DR HRIGQ +SV V   + + ++++ +   ++ +   LG+ +D  E+
Sbjct: 1013 LNEVYSSNKLKVYKFDGRLSLKERTAVLEDFKVKDYAVQKVLLLSLKAGGVGLNLTCASYAFMMDPWWSPSMEDQAIDRIHRIGQTNSVKVIRFVIDGSIEEKMLR-IQDRKRTLGEAMDTDED 1135          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD9_MOUSE (Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 41/114 (35.96%), Postives = 61/114 (53.51%), Query Frame = -1
Query:  410 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 748
            LD +    + K+    RIDG      RQA +  F + D D    +L  +AGG+G+ LTAA T I  +  W P + +QA+ R HRIGQ  +V VY L+  ++ +  ++D    KL
Sbjct: 1210 LDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKL 1323          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD6_HUMAN (Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = -1
Query:  410 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 748
            LD +    ++++    RIDG      RQA +  F + D D    +L  +AGG+G+ LTAA T I  +  W P + +QA+ R HRIGQ  +V VY L+  ++ +  ++D    KL
Sbjct:  812 LDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKL 925          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ATRX_PONPY (Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = -1
Query:  428 KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA--VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD 718
            + +   R+DG T   SR+    EF ++ +V+    ++S KAG +G+ L AA+ VI  + SW P   IQ+  R +R GQ   V VY  LA  T++D ++D
Sbjct: 2079 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYD 2177          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ATRX_PANTR (Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = -1
Query:  428 KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA--VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD 718
            + +   R+DG T   SR+    EF ++ +V+    ++S KAG +G+ L AA+ VI  + SW P   IQ+  R +R GQ   V VY  LA  T++D ++D
Sbjct: 2079 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYD 2177          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ATRX_HUMAN (Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = -1
Query:  428 KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA--VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD 718
            + +   R+DG T   SR+    EF ++ +V+    ++S KAG +G+ L AA+ VI  + SW P   IQ+  R +R GQ   V VY  LA  T++D ++D
Sbjct: 2079 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYD 2177          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ULS1_YEAST (ATP-dependent helicase ULS1 OS=Saccharomyces cerevisiae GN=ULS1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 38/116 (32.76%), Postives = 62/116 (53.45%), Query Frame = -1
Query:  386 FLKKKVHC--IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLD 727
            FLK K++   ++  G      R  ++ EF    + +  ++SMKAG  GLTLT A+ V+  +  W P    QA+DR +RI Q   V V+ L   D+V+D + ++ + K E +   +D
Sbjct: 1480 FLKNKLNFPYLKYIGSMNAQRRSDVINEFYRDPEKRILLISMKAGNSGLTLTCANHVVIVDPFWNPYVEEQAQDRCYRISQTKKVQVHKLFIKDSVEDRISELQKRKKEMVDSAMD 1595          
The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
CHD1_CHICK1.949e-1128.39Chromodomain-helicase-DNA-binding protein 1 OS=Gal... [more]
YWQA_BACSU2.545e-1134.19Uncharacterized ATP-dependent helicase ywqA OS=Bac... [more]
CHD9_HUMAN2.545e-1133.59Chromodomain-helicase-DNA-binding protein 9 OS=Hom... [more]
RAD5_CANGA3.324e-1132.26DNA repair protein RAD5 OS=Candida glabrata GN=RAD... [more]
CHD9_MOUSE3.324e-1135.96Chromodomain-helicase-DNA-binding protein 9 OS=Mus... [more]
CHD6_HUMAN3.324e-1135.09Chromodomain-helicase-DNA-binding protein 6 OS=Hom... [more]
ATRX_PONPY4.342e-1136.36Transcriptional regulator ATRX OS=Pongo pygmaeus G... [more]
ATRX_PANTR4.342e-1136.36Transcriptional regulator ATRX OS=Pan troglodytes ... [more]
ATRX_HUMAN4.342e-1136.36Transcriptional regulator ATRX OS=Homo sapiens GN=... [more]
ULS1_YEAST5.671e-1132.76ATP-dependent helicase ULS1 OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bp
CTTTTTTTATAAACGATGTTATTGTATTCATCTACAAAACAGAGGAATAT
CCCTATAAAGCCTCATGTCAGTATTACACTTACACTGCCTGTCATATAGA
GATTCTTGTCTCTCACTAATTTGGAGTAGTAATCAATGTTCTCTGAGGCT
CCGCATATCAAAAGGGCACATTTTCATGTGTCTGTGTACATGTGATGCAT
AGACCGACGCATCTCAAAATATACATTTTATAGTGTGTGGATTAGAGCTT
TCGGTATTTTAGCTTCTGCTGATGTTCAGAGTCATCCACATTGTTGCAAC
GCTTCAGGAAGGAGTCGAGTGTTTTCTGCTTTGCAGGGCTGCTTCTTATT
TGACTGCTTGAAACTTCCAAACTATTTTCATGACCATCAAGCACCTGTCC
CAAATTTTCCAACTTGCTCCGAACAACATCCCATACTATGTCATCAACTG
TGTCATTTGCCAGTAGGTAGTATACATTTACGGAAGATACCTGGCCGATC
CTGTGAGCACGATCTTCAGCTTGAATGAGATCACCTGGAGTCCATGACAA
CTCCGCGAAAATAACAGTGCTTGCAGCCGTTAATGTTAAACCAACACCTC
CGGCTTTCATAGATAGCACTGCTGCCTTGACATCATCTTTCTCCTGAAAT
TCAGTAACCAAAGCTTGTCTTGAAGCAGGAGGGGTACCCCCATCAATCCG
AATGCAATGCACTTTCTTCTTAAGAAAAAGTTTATGTATTGCATCAAGCA
TGGGCTG
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