CN188821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD1_CHICK (Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus GN=CHD1 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11 Identity = 44/155 (28.39%), Postives = 79/155 (50.97%), Query Frame = -1 Query: 302 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS----LEVSSSQIRSSPAKQKTLDSFLK 751 MLD + + ++ R+DG R+ + F E + +LS +AGG+G+ L +A TV+ + W P + +QA+ RAHRIGQ VN+Y L+ +V++ + + + K+ V+ + + L S+ S+P ++ L + LK Sbjct: 812 MLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAILK 966
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: YWQA_BACSU (Uncharacterized ATP-dependent helicase ywqA OS=Bacillus subtilis GN=ywqA PE=3 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11 Identity = 40/117 (34.19%), Postives = 65/117 (55.56%), Query Frame = -1 Query: 347 IDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQI 697 ++G R LV +FQ K+ +LS+KAGG GL LTAA+ VI + W P QA DRA+RIGQ V+V+ ++ T+++ + ++ SK Q++ E+S+ ++ Sbjct: 796 LNGSLSKQERDTLVEKFQRKE-YPTLILSLKAGGTGLNLTAANHVIHYDRWWNPAVENQATDRAYRIGQERFVHVHKMITTGTIEEKIDVMLESKQTLNDQIIQSENWITELSTQEL 911
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD9_HUMAN (Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9 PE=1 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11 Identity = 44/131 (33.59%), Postives = 70/131 (53.44%), Query Frame = -1 Query: 368 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL---ENLGQVLDGHENSL 748 LD + + K+ RIDG RQA + F + D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ +V VY L+ ++ + ++D KL + + Q + G E+++ Sbjct: 1211 LDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1341
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RAD5_CANGA (DNA repair protein RAD5 OS=Candida glabrata GN=RAD5 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11 Identity = 40/124 (32.26%), Postives = 69/124 (55.65%), Query Frame = -1 Query: 374 IHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDV--KAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHEN 739 +++++ K+ + DG R A++ +F+ KD K +LS+KAGGVGL LT AS + W+P QA DR HRIGQ +SV V + + ++++ + ++ + LG+ +D E+ Sbjct: 1013 LNEVYSSNKLKVYKFDGRLSLKERTAVLEDFKVKDYAVQKVLLLSLKAGGVGLNLTCASYAFMMDPWWSPSMEDQAIDRIHRIGQTNSVKVIRFVIDGSIEEKMLR-IQDRKRTLGEAMDTDED 1135
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD9_MOUSE (Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11 Identity = 41/114 (35.96%), Postives = 61/114 (53.51%), Query Frame = -1 Query: 410 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 748 LD + + K+ RIDG RQA + F + D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ +V VY L+ ++ + ++D KL Sbjct: 1210 LDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKL 1323
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD6_HUMAN (Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6 PE=1 SV=3) HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11 Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = -1 Query: 410 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 748 LD + ++++ RIDG RQA + F + D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ +V VY L+ ++ + ++D KL Sbjct: 812 LDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKL 925
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ATRX_PONPY (Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11 Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = -1 Query: 428 KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA--VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD 718 + + R+DG T SR+ EF ++ +V+ ++S KAG +G+ L AA+ VI + SW P IQ+ R +R GQ V VY LA T++D ++D Sbjct: 2079 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYD 2177
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ATRX_PANTR (Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11 Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = -1 Query: 428 KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA--VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD 718 + + R+DG T SR+ EF ++ +V+ ++S KAG +G+ L AA+ VI + SW P IQ+ R +R GQ V VY LA T++D ++D Sbjct: 2079 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYD 2177
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ATRX_HUMAN (Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=4) HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11 Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = -1 Query: 428 KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA--VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD 718 + + R+DG T SR+ EF ++ +V+ ++S KAG +G+ L AA+ VI + SW P IQ+ R +R GQ V VY LA T++D ++D Sbjct: 2079 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYD 2177
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ULS1_YEAST (ATP-dependent helicase ULS1 OS=Saccharomyces cerevisiae GN=ULS1 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11 Identity = 38/116 (32.76%), Postives = 62/116 (53.45%), Query Frame = -1 Query: 386 FLKKKVHC--IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLD 727 FLK K++ ++ G R ++ EF + + ++SMKAG GLTLT A+ V+ + W P QA+DR +RI Q V V+ L D+V+D + ++ + K E + +D Sbjct: 1480 FLKNKLNFPYLKYIGSMNAQRRSDVINEFYRDPEKRILLISMKAGNSGLTLTCANHVVIVDPFWNPYVEEQAQDRCYRISQTKKVQVHKLFIKDSVEDRISELQKRKKEMVDSAMD 1595 The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 138
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bpback to top |