CN188821

Overview
NameCN188821
Unique NameCN188821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = -1
Query:  410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751
            MLD +      +     RIDGG   A RQ  +  F      +   +LS +AGG+G+ L  A TVI  +  W P + IQA  RAHRIGQ + V +Y  +   +V++ +  V + K+
Sbjct: 1088 MLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKM 1202          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ATRX_MOUSE (Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = -1
Query:  428 KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA--VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD 718
            + +   R+DG T   SR+    EF ++ +V+    ++S KAG +G+ L AA+ VI  + SW P   IQ+  R +R GQ   V VY  LA  T++D ++D
Sbjct: 2062 RNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYD 2160          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SM3L3_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 42/124 (33.87%), Postives = 60/124 (48.39%), Query Frame = -1
Query:  377 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHE 748
            LD +     ++    +R DG      R+ ++ EF E       ++S+KAGGVGL LTAAS+V   +  W P    QA  R HRIGQ  +V V   +  DTV++ +  V   K   +   L   E
Sbjct: 1140 LDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGALTDEE 1263          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RHP26_SCHPO (DNA repair protein rhp26 OS=Schizosaccharomyces pombe GN=rhp26 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = -1
Query:  431 VHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 712
            VH  R+DG T  A RQ LV  F + +     +L+ + GG+G+ LT A  VI  +  W P    QA +RA R+GQ   V VY L+   T+++ ++
Sbjct:  667 VHYCRMDGSTSIALRQDLVDNFNKNEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEKIY 760          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RAD5_KLULA (DNA repair protein RAD5 OS=Kluyveromyces lactis GN=RAD5 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 40/117 (34.19%), Postives = 64/117 (54.70%), Query Frame = -1
Query:  377 KKKVHCIRIDGGTPPASRQALVTEFQEKD--DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHE 721
            + +V   + DG      R  ++ +F +KD   +K  +LS+K GGVGL LT AS     +  W+PG   QA DR HRIGQ  +V V   + +++V++ +  +   K   LG +++G E
Sbjct:  983 RDQVIIYKFDGRLDMKERTRILEQFHDKDLSCIKLLLLSLKTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERK-RMLGDIVEGDE 1098          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: TTF2_MOUSE (Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 38/125 (30.40%), Postives = 59/125 (47.20%), Query Frame = -1
Query:  377 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHE 751
            ML  +     K ++    IDG   P  R  LV  F      +  ++S+ AGGVGL LT  + +   ++ W P    QA DR +R+GQ   V ++  +   TV++ +  +   K +   QVL G E
Sbjct:  997 MLQVVALHLKKNRLTYATIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSE 1121          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 38/115 (33.04%), Postives = 59/115 (51.30%), Query Frame = -1
Query:  410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751
            +LD +      +     RIDG T    R   + E+ + +  K   +L+ +AGG+G+ L  A TVI  +  W P   +QA DRAHRIGQ   V+VY  +  + +++ V +    KL
Sbjct:  518 LLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKL 632          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 38/115 (33.04%), Postives = 57/115 (49.57%), Query Frame = -1
Query:  410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751
            +LD +    + +     RIDG T    R A +  F +    K   +LS +AGG+G+ L  A  V+  +  W P   +QA+DRAHRIGQ   V V+      T+++ V +    KL
Sbjct:  560 LLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 674          
The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
CHD3_HUMAN5.671e-1134.78Chromodomain-helicase-DNA-binding protein 3 OS=Hom... [more]
ATRX_MOUSE5.671e-1136.36Transcriptional regulator ATRX OS=Mus musculus GN=... [more]
SM3L3_ARATH7.406e-1133.87Putative SWI/SNF-related matrix-associated actin-d... [more]
RHP26_SCHPO7.406e-1137.23DNA repair protein rhp26 OS=Schizosaccharomyces po... [more]
RAD5_KLULA7.406e-1134.19DNA repair protein RAD5 OS=Kluyveromyces lactis GN... [more]
TTF2_MOUSE9.673e-1130.40Transcription termination factor 2 OS=Mus musculus... [more]
ISW2_YEAST9.673e-1133.04ISWI chromatin-remodeling complex ATPase ISW2 OS=S... [more]
ISW2_ORYSJ9.673e-1133.04Probable chromatin-remodeling complex ATPase chain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bp
CTTTTTTTATAAACGATGTTATTGTATTCATCTACAAAACAGAGGAATAT
CCCTATAAAGCCTCATGTCAGTATTACACTTACACTGCCTGTCATATAGA
GATTCTTGTCTCTCACTAATTTGGAGTAGTAATCAATGTTCTCTGAGGCT
CCGCATATCAAAAGGGCACATTTTCATGTGTCTGTGTACATGTGATGCAT
AGACCGACGCATCTCAAAATATACATTTTATAGTGTGTGGATTAGAGCTT
TCGGTATTTTAGCTTCTGCTGATGTTCAGAGTCATCCACATTGTTGCAAC
GCTTCAGGAAGGAGTCGAGTGTTTTCTGCTTTGCAGGGCTGCTTCTTATT
TGACTGCTTGAAACTTCCAAACTATTTTCATGACCATCAAGCACCTGTCC
CAAATTTTCCAACTTGCTCCGAACAACATCCCATACTATGTCATCAACTG
TGTCATTTGCCAGTAGGTAGTATACATTTACGGAAGATACCTGGCCGATC
CTGTGAGCACGATCTTCAGCTTGAATGAGATCACCTGGAGTCCATGACAA
CTCCGCGAAAATAACAGTGCTTGCAGCCGTTAATGTTAAACCAACACCTC
CGGCTTTCATAGATAGCACTGCTGCCTTGACATCATCTTTCTCCTGAAAT
TCAGTAACCAAAGCTTGTCTTGAAGCAGGAGGGGTACCCCCATCAATCCG
AATGCAATGCACTTTCTTCTTAAGAAAAAGTTTATGTATTGCATCAAGCA
TGGGCTG
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