CN188821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11 Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = -1 Query: 410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751 MLD + + RIDGG A RQ + F + +LS +AGG+G+ L A TVI + W P + IQA RAHRIGQ + V +Y + +V++ + V + K+ Sbjct: 1088 MLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKM 1202
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ATRX_MOUSE (Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11 Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = -1 Query: 428 KKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA--VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD 718 + + R+DG T SR+ EF ++ +V+ ++S KAG +G+ L AA+ VI + SW P IQ+ R +R GQ V VY LA T++D ++D Sbjct: 2062 RNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYD 2160
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SM3L3_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11 Identity = 42/124 (33.87%), Postives = 60/124 (48.39%), Query Frame = -1 Query: 377 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHE 748 LD + ++ +R DG R+ ++ EF E ++S+KAGGVGL LTAAS+V + W P QA R HRIGQ +V V + DTV++ + V K + L E Sbjct: 1140 LDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGALTDEE 1263
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RHP26_SCHPO (DNA repair protein rhp26 OS=Schizosaccharomyces pombe GN=rhp26 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11 Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = -1 Query: 431 VHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 712 VH R+DG T A RQ LV F + + +L+ + GG+G+ LT A VI + W P QA +RA R+GQ V VY L+ T+++ ++ Sbjct: 667 VHYCRMDGSTSIALRQDLVDNFNKNEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEKIY 760
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RAD5_KLULA (DNA repair protein RAD5 OS=Kluyveromyces lactis GN=RAD5 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11 Identity = 40/117 (34.19%), Postives = 64/117 (54.70%), Query Frame = -1 Query: 377 KKKVHCIRIDGGTPPASRQALVTEFQEKD--DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHE 721 + +V + DG R ++ +F +KD +K +LS+K GGVGL LT AS + W+PG QA DR HRIGQ +V V + +++V++ + + K LG +++G E Sbjct: 983 RDQVIIYKFDGRLDMKERTRILEQFHDKDLSCIKLLLLSLKTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERK-RMLGDIVEGDE 1098
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: TTF2_MOUSE (Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11 Identity = 38/125 (30.40%), Postives = 59/125 (47.20%), Query Frame = -1 Query: 377 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHE 751 ML + K ++ IDG P R LV F + ++S+ AGGVGL LT + + ++ W P QA DR +R+GQ V ++ + TV++ + + K + QVL G E Sbjct: 997 MLQVVALHLKKNRLTYATIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSE 1121
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11 Identity = 38/115 (33.04%), Postives = 59/115 (51.30%), Query Frame = -1 Query: 410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751 +LD + + RIDG T R + E+ + + K +L+ +AGG+G+ L A TVI + W P +QA DRAHRIGQ V+VY + + +++ V + KL Sbjct: 518 LLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKL 632
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11 Identity = 38/115 (33.04%), Postives = 57/115 (49.57%), Query Frame = -1 Query: 410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751 +LD + + + RIDG T R A + F + K +LS +AGG+G+ L A V+ + W P +QA+DRAHRIGQ V V+ T+++ V + KL Sbjct: 560 LLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 674 The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 138
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bpback to top |