CN188821

Overview
NameCN188821
Unique NameCN188821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_SCHPO (Putative DNA helicase ino80 OS=Schizosaccharomyces pombe GN=ino80 PE=1 SV=4)

HSP 1 Score: 85.1149 bits (209), Expect = 4.483e-16
Identity = 45/125 (36.00%), Postives = 72/125 (57.60%), Query Frame = -1
Query:  377 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHE 751
            M+D + +    ++   +R+DG +  + R+ +VTE+Q + ++   +LS +AGG+G+ LTAA TVIF +  W P    QA DRAHRIGQ   V VY  +   T+++ +    + K E    V+ G E
Sbjct: 1457 MIDLMEEYLTFRQYKYLRLDGSSKISQRRDMVTEWQTRPELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQKQVTVYRFITRGTIEERIVIRAKEKEEVQKVVISGGE 1581          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_EMENI (Putative DNA helicase ino80 OS=Emericella nidulans GN=ino80 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.855e-16
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = -1
Query:  383 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 751
            M+D + +    +     R+DG T    R+  V +FQ++ D+   +LS +AGG+G+ LTAA TVIF +  W P    QA DRAHR+GQ   V VY L+   T+++ +      K E    V+ G
Sbjct: 1349 MIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRSTIEERIRKRALQKEEVQRVVISG 1471          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: YFC1_SCHPO (Uncharacterized ATP-dependent helicase C25A8.01c OS=Schizosaccharomyces pombe GN=SPAC25A8.01c PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.646e-16
Identity = 44/129 (34.11%), Postives = 72/129 (55.81%), Query Frame = -1
Query:  365 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLE 751
            +LD +  +     +  +R DG T    RQ L+ +F   + +   +LS KAGG G+ L  A+ VI  ++S+ P D +QAEDRAHR+GQ   V VY  +  DT+++ +  +  +K+  L   L G+  ++E
Sbjct:  789 VLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFYADESINVFLLSTKAGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVTVYKFVVKDTIEEHIQRLANAKIA-LDATLSGNAETVE 916          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_ASPCL (Putative DNA helicase ino80 OS=Aspergillus clavatus GN=ino80 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.646e-16
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = -1
Query:  383 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 751
            M+D + +    +     R+DG T    R+  V +FQ++ D+   +LS +AGG+G+ LTAA TVIF +  W P    QA DRAHR+GQ   V VY L+   T+++ +      K E    V+ G
Sbjct: 1447 MIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1569          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: FUN30_YEAST (Uncharacterized ATP-dependent helicase FUN30 OS=Saccharomyces cerevisiae GN=FUN30 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.646e-16
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = -1
Query:  347 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQI 751
            +LD +  +        +R+DG T    RQ L+ +F E  D+   +LS KAGG G+ L  A+ VI  + S+ P D  QA DRAHR+GQ   VN+  L+  D++++ +  + ++KL  L   +   + S +V  S++
Sbjct:  978 VLDILEMVLSTLDYKFLRLDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLA-LDSYISEDKKSQDVLESKV 1111          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_COCIM (Putative DNA helicase INO80 OS=Coccidioides immitis GN=INO80 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.304e-15
Identity = 44/123 (35.77%), Postives = 68/123 (55.28%), Query Frame = -1
Query:  383 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 751
            M+D + +    +     R+DG T    R+  V++FQ++ ++   +LS +AGG+G+ LTAA TVIF +  W P    QA DRAHR+GQ   V VY L+   T+++ +      K E    V+ G
Sbjct: 1408 MIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVSDFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1530          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: HEPF1_PLAF7 (Probable ATP-dependent helicase PF08_0048 OS=Plasmodium falciparum (isolate 3D7) GN=PF08_0048 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.703e-15
Identity = 52/169 (30.77%), Postives = 82/169 (48.52%), Query Frame = -1
Query:  275 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW--DVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQK--------TLDSFLKRCNNVDDSE 751
            MLD +           IR+DG T    RQ +VT+F     +   + S ++G +G+ LTAA+ VIF +  W P    QA DR HRIGQ   V+V+  +   TV++ +W   + + KL+N+  +  G+ N+    S    + P   K          + F+ + NN DD +
Sbjct: 1796 MLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVEENIWKKQLQKRKLDNI-CINMGNFNNSNTHSKITDTDPTHNKDWFTNVDTIKEVFINKKNNDDDDD 1963          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_NEOFI (Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.225e-15
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = -1
Query:  383 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 751
            M+D + +    +     R+DG T    R+  V +FQ++ ++   +LS +AGG+G+ LTAA TVIF +  W P    QA DRAHR+GQ   V VY L+   T+++ +      K E    V+ G
Sbjct: 1446 MIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1568          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_ASPOR (Putative DNA helicase ino80 OS=Aspergillus oryzae GN=ino80 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.225e-15
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = -1
Query:  383 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 751
            M+D + +    +     R+DG T    R+  V +FQ++ ++   +LS +AGG+G+ LTAA TVIF +  W P    QA DRAHR+GQ   V VY L+   T+++ +      K E    V+ G
Sbjct: 1244 MIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1366          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_ASPFU (Putative DNA helicase ino80 OS=Aspergillus fumigatus GN=ino80 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.225e-15
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = -1
Query:  383 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 751
            M+D + +    +     R+DG T    R+  V +FQ++ ++   +LS +AGG+G+ LTAA TVIF +  W P    QA DRAHR+GQ   V VY L+   T+++ +      K E    V+ G
Sbjct: 1446 MIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1568          
The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
INO80_SCHPO4.483e-1636.00Putative DNA helicase ino80 OS=Schizosaccharomyces... [more]
INO80_EMENI5.855e-1636.59Putative DNA helicase ino80 OS=Emericella nidulans... [more]
YFC1_SCHPO7.646e-1634.11Uncharacterized ATP-dependent helicase C25A8.01c O... [more]
INO80_ASPCL7.646e-1636.59Putative DNA helicase ino80 OS=Aspergillus clavatu... [more]
FUN30_YEAST7.646e-1633.33Uncharacterized ATP-dependent helicase FUN30 OS=Sa... [more]
INO80_COCIM1.304e-1535.77Putative DNA helicase INO80 OS=Coccidioides immiti... [more]
HEPF1_PLAF71.703e-1530.77Probable ATP-dependent helicase PF08_0048 OS=Plasm... [more]
INO80_NEOFI2.225e-1535.77Putative DNA helicase ino80 OS=Neosartorya fischer... [more]
INO80_ASPOR2.225e-1535.77Putative DNA helicase ino80 OS=Aspergillus oryzae ... [more]
INO80_ASPFU2.225e-1535.77Putative DNA helicase ino80 OS=Aspergillus fumigat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bp
CTTTTTTTATAAACGATGTTATTGTATTCATCTACAAAACAGAGGAATAT
CCCTATAAAGCCTCATGTCAGTATTACACTTACACTGCCTGTCATATAGA
GATTCTTGTCTCTCACTAATTTGGAGTAGTAATCAATGTTCTCTGAGGCT
CCGCATATCAAAAGGGCACATTTTCATGTGTCTGTGTACATGTGATGCAT
AGACCGACGCATCTCAAAATATACATTTTATAGTGTGTGGATTAGAGCTT
TCGGTATTTTAGCTTCTGCTGATGTTCAGAGTCATCCACATTGTTGCAAC
GCTTCAGGAAGGAGTCGAGTGTTTTCTGCTTTGCAGGGCTGCTTCTTATT
TGACTGCTTGAAACTTCCAAACTATTTTCATGACCATCAAGCACCTGTCC
CAAATTTTCCAACTTGCTCCGAACAACATCCCATACTATGTCATCAACTG
TGTCATTTGCCAGTAGGTAGTATACATTTACGGAAGATACCTGGCCGATC
CTGTGAGCACGATCTTCAGCTTGAATGAGATCACCTGGAGTCCATGACAA
CTCCGCGAAAATAACAGTGCTTGCAGCCGTTAATGTTAAACCAACACCTC
CGGCTTTCATAGATAGCACTGCTGCCTTGACATCATCTTTCTCCTGAAAT
TCAGTAACCAAAGCTTGTCTTGAAGCAGGAGGGGTACCCCCATCAATCCG
AATGCAATGCACTTTCTTCTTAAGAAAAAGTTTATGTATTGCATCAAGCA
TGGGCTG
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