CN188821

Overview
NameCN188821
Unique NameCN188821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_SCLS1 (Putative DNA helicase INO80 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=INO80 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.460e-14
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = -1
Query:  440 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDD 751
            M+D + +    +    +R+DG T    R+  V +FQ + ++   +LS +AGG+G+ LT+A TVIF +  W P    QA DRAHR+GQ   V VY ++   T+++
Sbjct: 1450 MIDLMEEYLTYRNYKYLRLDGSTKLEDRRDTVHDFQTRPEIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRMITRGTIEE 1553          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD1L_MOUSE (Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus GN=Chd1l PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.460e-14
Identity = 47/123 (38.21%), Postives = 67/123 (54.47%), Query Frame = -1
Query:  383 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 751
            MLD +      +     R+DG      R   +  F  +  +   +LS +AGGVG+ LTAA TVIF +  + P + +QA  RAHRIGQ  SV V  L+  DTV++IV+    SKL+    V++G
Sbjct:  369 MLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGNQP-IFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEG 490          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD1L_DANRE (Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio GN=chd1l PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.460e-14
Identity = 50/128 (39.06%), Postives = 67/128 (52.34%), Query Frame = -1
Query:  368 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSL 751
            MLD +      +     R+DG      R   +  F  KD V   +LS KAGGVG+ LTAA TVIF +  + P + +QA  RAHRIGQ   V V  LL  DT+++I++    SKL     V++    SL
Sbjct:  364 MLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFSTKD-VFIFLLSTKAGGVGMNLTAADTVIFVDGDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLTDTVIEEGRFSL 490          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_USTMA (Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.213e-14
Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = -1
Query:  440 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDD 751
            +LD +           +R+DG T   SRQAL  +F     + A +LS ++GG+G+ LT A TV+F +L W      Q  DRAHRIGQ   V++Y  +   T+++
Sbjct: 1561 VLDILESFLNYHGYRYLRLDGATKVESRQALTEQFNRDARISAFILSTRSGGLGINLTGADTVLFYDLDWNAAIEAQCMDRAHRIGQTRDVHIYRFVTEHTIEE 1664          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_PHANO (Putative DNA helicase INO80 OS=Phaeosphaeria nodorum GN=INO80 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.213e-14
Identity = 43/123 (34.96%), Postives = 65/123 (52.85%), Query Frame = -1
Query:  383 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 751
            M+D + +    +     R+DG T    R+  V +FQ    +   +LS +AGG+G+ LT+A TVIF +  W P    QA DRAHR+GQ   V VY L+ + T+++ +      K E    V+ G
Sbjct: 1427 MIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQSDPTIFVFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITSGTIEERIRKRALQKEEVQRVVISG 1549          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: Y020_MYCPN (Uncharacterized ATP-dependent helicase MPN_020 OS=Mycoplasma pneumoniae GN=MPN_020 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.196e-14
Identity = 44/129 (34.11%), Postives = 68/129 (52.71%), Query Frame = -1
Query:  365 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLE 751
            ++D     F ++ +     DG   P SR +++ +F    +    + S+KAGGVG+ LTAA  VI  ++ W      QA DRAHRIGQ  +V VY ++A +T+++ V  V   K E + + L    N  E
Sbjct:  890 VIDHFKDTFKEQGIEYFIFDGRKSPKSRHSIIEKFNNAKNPCVLLASLKAGGVGINLTAAEVVIHFDVWWNTAVENQATDRAHRIGQKKTVQVYRIIAKNTIEERVCQVQAEKQELVSKTLVEDVNFFE 1018          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_SCHPO (Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.196e-14
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = -1
Query:  443 IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 703
            +R+DG T    RQ L   F   D +   +LS ++GG+G+ LT A TVIF +  W P    QA+DR+HRIGQ   V++Y L++  TV+
Sbjct: 1035 LRLDGATKIEQRQILTERFNNDDKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVE 1121          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RHP16_SCHPO (ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe GN=rhp16 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.196e-14
Identity = 42/128 (32.81%), Postives = 66/128 (51.56%), Query Frame = -1
Query:  368 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSL 751
            MLD IH    K   +C+++DGG  P +R A +  F    ++   ++S+KAGGV L LT AS V   +  W      QA DR HRIGQ   + V  L   ++++  + ++   K + +   +D  E +L
Sbjct:  720 MLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSNDINITIFLVSLKAGGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIENSIESKIIELQEKKAQMIHATIDQDEKAL 847          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD1L_BOVIN (Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus GN=CHD1L PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.196e-14
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = -1
Query:  383 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 751
            MLD +      +     R+DG      R   +  F ++  +   +LS +AGGVG+ LTAA TVIF +  + P + +QA  RAHRIGQ  SV V  L+  DTV++IV+    SKL+    +++G
Sbjct:  377 MLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFTFLLSTRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIEG 498          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: YF2C_SCHPO (Uncharacterized ATP-dependent helicase C17A2.12 OS=Schizosaccharomyces pombe GN=SPAC17A2.12 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.157e-14
Identity = 46/122 (37.70%), Postives = 65/122 (53.28%), Query Frame = -1
Query:  371 HKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS 736
            H L L+   H +R DG      RQ  +  F    DV   ++S+KAG VGL LT A+ VI  E  + P    QA DR HR+GQ   V VY  +  DT+++ +  V R K + + + LD +EN+
Sbjct:  759 HMLKLENIRH-VRYDGTMSANQRQKSLHSFNNDKDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIVSVQRKKRQLVKEALDSNENN 879          
The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
INO80_SCLS12.460e-1436.54Putative DNA helicase INO80 OS=Sclerotinia sclerot... [more]
CHD1L_MOUSE2.460e-1438.21Chromodomain-helicase-DNA-binding protein 1-like O... [more]
CHD1L_DANRE2.460e-1439.06Chromodomain-helicase-DNA-binding protein 1-like O... [more]
SWR1_USTMA3.213e-1436.54Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1[more]
INO80_PHANO3.213e-1434.96Putative DNA helicase INO80 OS=Phaeosphaeria nodor... [more]
Y020_MYCPN4.196e-1434.11Uncharacterized ATP-dependent helicase MPN_020 OS=... [more]
SWR1_SCHPO4.196e-1442.53Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1... [more]
RHP16_SCHPO4.196e-1432.81ATP-dependent helicase rhp16 OS=Schizosaccharomyce... [more]
CHD1L_BOVIN4.196e-1437.40Chromodomain-helicase-DNA-binding protein 1-like O... [more]
YF2C_SCHPO7.157e-1437.70Uncharacterized ATP-dependent helicase C17A2.12 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006N06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bp
CTTTTTTTATAAACGATGTTATTGTATTCATCTACAAAACAGAGGAATAT
CCCTATAAAGCCTCATGTCAGTATTACACTTACACTGCCTGTCATATAGA
GATTCTTGTCTCTCACTAATTTGGAGTAGTAATCAATGTTCTCTGAGGCT
CCGCATATCAAAAGGGCACATTTTCATGTGTCTGTGTACATGTGATGCAT
AGACCGACGCATCTCAAAATATACATTTTATAGTGTGTGGATTAGAGCTT
TCGGTATTTTAGCTTCTGCTGATGTTCAGAGTCATCCACATTGTTGCAAC
GCTTCAGGAAGGAGTCGAGTGTTTTCTGCTTTGCAGGGCTGCTTCTTATT
TGACTGCTTGAAACTTCCAAACTATTTTCATGACCATCAAGCACCTGTCC
CAAATTTTCCAACTTGCTCCGAACAACATCCCATACTATGTCATCAACTG
TGTCATTTGCCAGTAGGTAGTATACATTTACGGAAGATACCTGGCCGATC
CTGTGAGCACGATCTTCAGCTTGAATGAGATCACCTGGAGTCCATGACAA
CTCCGCGAAAATAACAGTGCTTGCAGCCGTTAATGTTAAACCAACACCTC
CGGCTTTCATAGATAGCACTGCTGCCTTGACATCATCTTTCTCCTGAAAT
TCAGTAACCAAAGCTTGTCTTGAAGCAGGAGGGGTACCCCCATCAATCCG
AATGCAATGCACTTTCTTCTTAAGAAAAAGTTTATGTATTGCATCAAGCA
TGGGCTG
back to top