CN188821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_ASPFU (Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 7.157e-14 Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = -1 Query: 443 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 751 MLD + + +R+DG T RQ L F D + +LS ++GG+G+ LT A TVIF +L W P Q +DR HRIGQ V++Y ++ T++ Sbjct: 1406 MLDILEQFLNIHGHRYLRLDGTTKVEQRQILTDRFNNDDRILVFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIE 1508
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SNF22_SCHPO (SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe GN=snf22 PE=1 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 7.157e-14 Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = -1 Query: 389 IRIDGGTPPASRQALVTEFQE-KDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVL 703 +R+DG T R +L+ +F + K DV +LS +AGG+GL L A TVI + W P +QA+DRAHRIGQ V + L+ ++++ + + KL+ G+V+ Sbjct: 1231 LRLDGSTKSDDRCSLLAQFNDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSIEENILSRAQYKLDLDGKVI 1336
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMRCD_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 7.157e-14 Identity = 45/131 (34.35%), Postives = 74/131 (56.49%), Query Frame = -1 Query: 368 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL---ENLGQVLDGHENSL 751 MLD + L + +R+DG T + R L+ EF D+ +LS KAGG+G+ LT+A+ VI ++ P + QAEDR HR+GQ V V L++ T+++ + + + KL +++ V +G E S+ Sbjct: 882 MLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSM 1012
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13 Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = -1 Query: 443 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 751 MLD + + +R+DG T RQ L F + + A +LS ++GG+G+ LT A TVIF +L W P Q +DR HRIGQ V++Y ++ T++ Sbjct: 1359 MLDVLEQFLNIHGHRYLRLDGTTKVEQRQILTDRFNNDNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEYTIE 1461
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SNF2_YEAST (Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae GN=SNF2 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13 Identity = 48/168 (28.57%), Postives = 87/168 (51.79%), Query Frame = -1 Query: 275 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG----HENSLEVSSSQIRS----SPAKQKTLDSFLKRCNNVDDSE 751 ++D + + +R+DG T R L+ F D + +LS +AGG+GL L A TVI + W P +QA+DRAHRIGQ + V + L+ ++V++++ + KL+ G+V+ ++++ E + +RS ++K +S ++ + DSE Sbjct: 1115 IMDIMEDFLRYINIKYLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQEALLRSLLDAEEERRKKRESGVEEEEELKDSE 1282
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_MAGGR (Putative DNA helicase INO80 OS=Magnaporthe grisea GN=INO80 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13 Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = -1 Query: 383 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 751 M+D + + + R+DG T R+ V +FQ + +LS +AGG+G+ LT+A TVIF + W P QA DRAHR+GQ V VY L+ T+++ + K E V+ G Sbjct: 1687 MIDLMEEYLTYRNWKYCRLDGSTKFEDRRDTVHDFQTNPSIFVFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRAMQKEEVQRVVITG 1809
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SNF21_SCHPO (Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe GN=snf21 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13 Identity = 47/150 (31.33%), Postives = 81/150 (54.00%), Query Frame = -1 Query: 260 IRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKT-LDSFLKRCNNVDDSEHQQKL 703 +R+DG T R L+ F + +V +LS +AGG+GL L A TVI + W P +QA+DRAHRIGQ V +Y L+ +V++ + + KL+ G+V ++ +S+P +++ L S L+ N ++++ + +L Sbjct: 780 LRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDIDGKV-------IQAGKFDNKSTPEEREAFLRSLLENENGEEENDEKGEL 922
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: DOM_DROME (Helicase domino OS=Drosophila melanogaster GN=dom PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13 Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = -1 Query: 443 MLDAIHKLFLKKKVHC-IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 751 MLD + + FL H +R+DG T RQ L+ F + +LS ++GGVG+ LT A TVIF + W P QA+DR HRIGQ V++Y L++ T++ Sbjct: 1686 MLDVL-EAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIE 1788
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMRCD_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Mus musculus GN=Smarcad1 PE=1 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13 Identity = 41/115 (35.65%), Postives = 66/115 (57.39%), Query Frame = -1 Query: 407 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLE 751 MLD + L + +R+DG T + R L+ EF D+ +LS KAGG+G+ LT+A+ VI ++ P + QAEDR HR+GQ V V L++ T+++ + + + KL+ Sbjct: 877 MLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLK 991
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ERCC6_HUMAN (DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13 Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = -1 Query: 431 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 751 MLD + +K +++DG T ASRQ L+T + E + +L+ + GG+G+ LT A+ V+ + W P QA +RA RIGQ V VY LL T+++ ++ Sbjct: 867 MLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIY 973 The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 138
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bpback to top |