CN188821

Overview
NameCN188821
Unique NameCN188821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_ASPFU (Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.157e-14
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = -1
Query:  443 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 751
            MLD + +         +R+DG T    RQ L   F   D +   +LS ++GG+G+ LT A TVIF +L W P    Q +DR HRIGQ   V++Y  ++  T++
Sbjct: 1406 MLDILEQFLNIHGHRYLRLDGTTKVEQRQILTDRFNNDDRILVFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIE 1508          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SNF22_SCHPO (SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe GN=snf22 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.157e-14
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  389 IRIDGGTPPASRQALVTEFQE-KDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVL 703
            +R+DG T    R +L+ +F + K DV   +LS +AGG+GL L  A TVI  +  W P   +QA+DRAHRIGQ   V +  L+   ++++ +    + KL+  G+V+
Sbjct: 1231 LRLDGSTKSDDRCSLLAQFNDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSIEENILSRAQYKLDLDGKVI 1336          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMRCD_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.157e-14
Identity = 45/131 (34.35%), Postives = 74/131 (56.49%), Query Frame = -1
Query:  368 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL---ENLGQVLDGHENSL 751
            MLD +  L    +   +R+DG T  + R  L+ EF    D+   +LS KAGG+G+ LT+A+ VI  ++   P +  QAEDR HR+GQ   V V  L++  T+++ +  + + KL   +++  V +G E S+
Sbjct:  882 MLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSM 1012          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = -1
Query:  443 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 751
            MLD + +         +R+DG T    RQ L   F   + + A +LS ++GG+G+ LT A TVIF +L W P    Q +DR HRIGQ   V++Y  ++  T++
Sbjct: 1359 MLDVLEQFLNIHGHRYLRLDGTTKVEQRQILTDRFNNDNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEYTIE 1461          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SNF2_YEAST (Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae GN=SNF2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 48/168 (28.57%), Postives = 87/168 (51.79%), Query Frame = -1
Query:  275 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG----HENSLEVSSSQIRS----SPAKQKTLDSFLKRCNNVDDSE 751
            ++D +        +  +R+DG T    R  L+  F   D +    +LS +AGG+GL L  A TVI  +  W P   +QA+DRAHRIGQ + V +  L+  ++V++++ +    KL+  G+V+      ++++ E   + +RS       ++K  +S ++    + DSE
Sbjct: 1115 IMDIMEDFLRYINIKYLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQEALLRSLLDAEEERRKKRESGVEEEEELKDSE 1282          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_MAGGR (Putative DNA helicase INO80 OS=Magnaporthe grisea GN=INO80 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = -1
Query:  383 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDG 751
            M+D + +    +     R+DG T    R+  V +FQ    +   +LS +AGG+G+ LT+A TVIF +  W P    QA DRAHR+GQ   V VY L+   T+++ +      K E    V+ G
Sbjct: 1687 MIDLMEEYLTYRNWKYCRLDGSTKFEDRRDTVHDFQTNPSIFVFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRAMQKEEVQRVVITG 1809          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SNF21_SCHPO (Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe GN=snf21 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 47/150 (31.33%), Postives = 81/150 (54.00%), Query Frame = -1
Query:  260 IRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKT-LDSFLKRCNNVDDSEHQQKL 703
            +R+DG T    R  L+  F +   +V   +LS +AGG+GL L  A TVI  +  W P   +QA+DRAHRIGQ   V +Y L+   +V++ +    + KL+  G+V       ++      +S+P +++  L S L+  N  ++++ + +L
Sbjct:  780 LRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDIDGKV-------IQAGKFDNKSTPEEREAFLRSLLENENGEEENDEKGEL 922          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: DOM_DROME (Helicase domino OS=Drosophila melanogaster GN=dom PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = -1
Query:  443 MLDAIHKLFLKKKVHC-IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 751
            MLD + + FL    H  +R+DG T    RQ L+  F     +   +LS ++GGVG+ LT A TVIF +  W P    QA+DR HRIGQ   V++Y L++  T++
Sbjct: 1686 MLDVL-EAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIE 1788          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMRCD_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Mus musculus GN=Smarcad1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 41/115 (35.65%), Postives = 66/115 (57.39%), Query Frame = -1
Query:  407 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLE 751
            MLD +  L    +   +R+DG T  + R  L+ EF    D+   +LS KAGG+G+ LT+A+ VI  ++   P +  QAEDR HR+GQ   V V  L++  T+++ +  + + KL+
Sbjct:  877 MLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLK 991          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ERCC6_HUMAN (DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = -1
Query:  431 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 751
            MLD +      +K   +++DG T  ASRQ L+T + E   +   +L+ + GG+G+ LT A+ V+  +  W P    QA +RA RIGQ   V VY LL   T+++ ++
Sbjct:  867 MLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIY 973          
The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SWR1_ASPFU7.157e-1436.89Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=... [more]
SNF22_SCHPO7.157e-1437.74SWI/SNF chromatin-remodeling complex subunit snf22... [more]
SMRCD_HUMAN7.157e-1434.35SWI/SNF-related matrix-associated actin-dependent ... [more]
SWR1_EMENI1.221e-1336.89Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 ... [more]
SNF2_YEAST1.221e-1328.57Transcription regulatory protein SNF2 OS=Saccharom... [more]
INO80_MAGGR1.221e-1334.96Putative DNA helicase INO80 OS=Magnaporthe grisea ... [more]
SNF21_SCHPO1.594e-1331.33Chromatin structure-remodeling complex subunit snf... [more]
DOM_DROME1.594e-1340.38Helicase domino OS=Drosophila melanogaster GN=dom ... [more]
SMRCD_MOUSE2.720e-1335.65SWI/SNF-related matrix-associated actin-dependent ... [more]
ERCC6_HUMAN2.720e-1335.51DNA excision repair protein ERCC-6 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bp
CTTTTTTTATAAACGATGTTATTGTATTCATCTACAAAACAGAGGAATAT
CCCTATAAAGCCTCATGTCAGTATTACACTTACACTGCCTGTCATATAGA
GATTCTTGTCTCTCACTAATTTGGAGTAGTAATCAATGTTCTCTGAGGCT
CCGCATATCAAAAGGGCACATTTTCATGTGTCTGTGTACATGTGATGCAT
AGACCGACGCATCTCAAAATATACATTTTATAGTGTGTGGATTAGAGCTT
TCGGTATTTTAGCTTCTGCTGATGTTCAGAGTCATCCACATTGTTGCAAC
GCTTCAGGAAGGAGTCGAGTGTTTTCTGCTTTGCAGGGCTGCTTCTTATT
TGACTGCTTGAAACTTCCAAACTATTTTCATGACCATCAAGCACCTGTCC
CAAATTTTCCAACTTGCTCCGAACAACATCCCATACTATGTCATCAACTG
TGTCATTTGCCAGTAGGTAGTATACATTTACGGAAGATACCTGGCCGATC
CTGTGAGCACGATCTTCAGCTTGAATGAGATCACCTGGAGTCCATGACAA
CTCCGCGAAAATAACAGTGCTTGCAGCCGTTAATGTTAAACCAACACCTC
CGGCTTTCATAGATAGCACTGCTGCCTTGACATCATCTTTCTCCTGAAAT
TCAGTAACCAAAGCTTGTCTTGAAGCAGGAGGGGTACCCCCATCAATCCG
AATGCAATGCACTTTCTTCTTAAGAAAAAGTTTATGTATTGCATCAAGCA
TGGGCTG
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