CN188821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: PKL_ARATH (CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13 Identity = 42/117 (35.90%), Postives = 62/117 (52.99%), Query Frame = -1 Query: 410 QPMLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 757 Q MLD + KK RIDG A RQ + F K+ K +LS +AGG+G+ L A TVI + W P +QA RAHR+GQ + V +Y L+ T+++ + + + K+ Sbjct: 621 QHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKM 737
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: HRP1_SCHPO (Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe GN=hrp1 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13 Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -1 Query: 245 RIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAK--QKTLDSFLK--RCNNVDDSEHQQKLKYRKL 700 R+DG P + R+ + F D +LS +AGG+G+ L A TVI + W P +QA RAHRIGQ + VNVY L+ DTV++ + + R K+ +L+ SL V+ S K + L + LK N +E+Q+KL+ L Sbjct: 749 RLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARRKM-----ILEYAIISLGVTEKSKNSKNDKYDAQELSAILKFGASNMFKATENQKKLENMNL 900
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_NEUCR (Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12 Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = -1 Query: 443 IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 703 +R+DG T RQ L F + +LS ++GG+G+ LT A TVIF + W P Q +DR HRIGQ V++Y L++ T++ Sbjct: 1550 LRLDGATKVEQRQILTDRFNHDPRILCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIGQTRDVHIYRLVSEHTIE 1636
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_CANAL (Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12 Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = -1 Query: 443 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 751 +LD + + +R+DG T RQ L +F + +LS ++GG+G+ LT A TVIF + W P Q +DR HRIGQV V++Y ++ T++ Sbjct: 1394 VLDILEQFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDVHIYRFVSEYTIE 1496
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RA54B_MOUSE (DNA repair and recombination protein RAD54B OS=Mus musculus GN=Rad54b PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12 Identity = 50/145 (34.48%), Postives = 72/145 (49.66%), Query Frame = -1 Query: 317 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTL 748 L+ + ++ + C R+DG TP + RQ +V F K +LS KAGGVGL L S +I ++ W P IQA R R GQ V++Y LL T+++ ++ SK G V+D L SS I+ S + K L Sbjct: 651 LNVLEEVCKRHGYACARLDGQTPVSQRQHIVDSFNSKYSTDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVD-----LTRSSEHIQFSVEELKNL 790
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RA54B_CHICK (DNA repair and recombination protein RAD54B OS=Gallus gallus GN=RAD54B PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12 Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = -1 Query: 353 RIDGGTPPASRQALVTEFQEK-DDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSS 700 R+DG TP + RQ +V F K +LS KAGGVGL L AS +I ++ W P IQA R R GQ +V++Y LL T+++ ++ SK + G V+D + S + S Sbjct: 696 RLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHIHFS 812
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ISW1_CAEEL (Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis elegans GN=isw-1 PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12 Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = -1 Query: 410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751 MLD + + R+DG TP R + + D K +L+ +AGG+G+ L A VI + W P +QA DRAHRIGQ V V+ L+ +TVD+ + + +KL Sbjct: 463 MLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTVDERIIEKAEAKL 577
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_KLULA (Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12 Identity = 46/159 (28.93%), Postives = 73/159 (45.91%), Query Frame = -1 Query: 275 IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENL----GQVLDGHENSLEVSSSQIRSSP----------AKQKTLDSFLKRCNNVDDSE 703 +R+DG T RQ L F + +LS ++GG+G+ LT A TVIF + W P Q +DR HRIGQ V++Y +++ T++ + K L+N+ G + L V +P QK L+ L + + DD++ Sbjct: 1354 MRLDGATKIEDRQILTERFNSDPRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSDHTIESNILKKANQKRHLDNVVIQTGDFTTDYFTKLSVKDLLGAEAPEDIPDDKPLLQDQKNLNKLLAQAEDEDDAK 1512
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_CRYNE (Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12 Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = -1 Query: 440 IHKLFLKKKVH-CIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDD 739 I ++FL H +R+DG T RQ L F + + S ++GGVG+ LT A TV F + W P Q DRAHRIGQ V++Y +++ TV++ Sbjct: 969 ILEMFLSHNGHRYLRLDGSTKIEDRQVLTERFNSDSRIFVFIASSRSGGVGINLTGADTVFFYDSDWNPSMDRQCMDRAHRIGQTREVHIYRFVSSHTVEE 1069
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12 Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = -1 Query: 410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751 +LD + + + R+DG TP RQ + + E + K +LS +AGG+G+ L A VI + W P +QA DRAHRIGQ +V V+ + ++TV++ + + KL Sbjct: 510 VLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKL 624 The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 138
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bpback to top |