CN188821

Overview
NameCN188821
Unique NameCN188821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: PKL_ARATH (CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 42/117 (35.90%), Postives = 62/117 (52.99%), Query Frame = -1
Query:  410 QPMLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 757
            Q MLD +      KK    RIDG    A RQ  +  F  K+  K   +LS +AGG+G+ L  A TVI  +  W P   +QA  RAHR+GQ + V +Y L+   T+++ +  + + K+
Sbjct:  621 QHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKM 737          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: HRP1_SCHPO (Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe GN=hrp1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -1
Query:  245 RIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAK--QKTLDSFLK--RCNNVDDSEHQQKLKYRKL 700
            R+DG  P + R+  +  F   D      +LS +AGG+G+ L  A TVI  +  W P   +QA  RAHRIGQ + VNVY  L+ DTV++ + +  R K+     +L+    SL V+     S   K   + L + LK    N    +E+Q+KL+   L
Sbjct:  749 RLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARRKM-----ILEYAIISLGVTEKSKNSKNDKYDAQELSAILKFGASNMFKATENQKKLENMNL 900          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_NEUCR (Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = -1
Query:  443 IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 703
            +R+DG T    RQ L   F     +   +LS ++GG+G+ LT A TVIF +  W P    Q +DR HRIGQ   V++Y L++  T++
Sbjct: 1550 LRLDGATKVEQRQILTDRFNHDPRILCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIGQTRDVHIYRLVSEHTIE 1636          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_CANAL (Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = -1
Query:  443 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 751
            +LD + +         +R+DG T    RQ L  +F     +   +LS ++GG+G+ LT A TVIF +  W P    Q +DR HRIGQV  V++Y  ++  T++
Sbjct: 1394 VLDILEQFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDVHIYRFVSEYTIE 1496          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RA54B_MOUSE (DNA repair and recombination protein RAD54B OS=Mus musculus GN=Rad54b PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 50/145 (34.48%), Postives = 72/145 (49.66%), Query Frame = -1
Query:  317 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTL 748
            L+ + ++  +    C R+DG TP + RQ +V  F  K       +LS KAGGVGL L   S +I  ++ W P   IQA  R  R GQ   V++Y LL   T+++ ++    SK    G V+D     L  SS  I+ S  + K L
Sbjct:  651 LNVLEEVCKRHGYACARLDGQTPVSQRQHIVDSFNSKYSTDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVD-----LTRSSEHIQFSVEELKNL 790          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RA54B_CHICK (DNA repair and recombination protein RAD54B OS=Gallus gallus GN=RAD54B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = -1
Query:  353 RIDGGTPPASRQALVTEFQEK-DDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSS 700
            R+DG TP + RQ +V  F  K       +LS KAGGVGL L  AS +I  ++ W P   IQA  R  R GQ  +V++Y LL   T+++ ++    SK +  G V+D  + S  +  S
Sbjct:  696 RLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHIHFS 812          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ISW1_CAEEL (Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis elegans GN=isw-1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = -1
Query:  410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751
            MLD +      +     R+DG TP   R   +  +   D  K   +L+ +AGG+G+ L  A  VI  +  W P   +QA DRAHRIGQ   V V+ L+  +TVD+ + +   +KL
Sbjct:  463 MLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTVDERIIEKAEAKL 577          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_KLULA (Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 46/159 (28.93%), Postives = 73/159 (45.91%), Query Frame = -1
Query:  275 IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENL----GQVLDGHENSLEVSSSQIRSSP----------AKQKTLDSFLKRCNNVDDSE 703
            +R+DG T    RQ L   F     +   +LS ++GG+G+ LT A TVIF +  W P    Q +DR HRIGQ   V++Y  +++ T++  +      K  L+N+    G     +   L V       +P            QK L+  L +  + DD++
Sbjct: 1354 MRLDGATKIEDRQILTERFNSDPRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSDHTIESNILKKANQKRHLDNVVIQTGDFTTDYFTKLSVKDLLGAEAPEDIPDDKPLLQDQKNLNKLLAQAEDEDDAK 1512          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_CRYNE (Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = -1
Query:  440 IHKLFLKKKVH-CIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDD 739
            I ++FL    H  +R+DG T    RQ L   F     +   + S ++GGVG+ LT A TV F +  W P    Q  DRAHRIGQ   V++Y  +++ TV++
Sbjct:  969 ILEMFLSHNGHRYLRLDGSTKIEDRQVLTERFNSDSRIFVFIASSRSGGVGINLTGADTVFFYDSDWNPSMDRQCMDRAHRIGQTREVHIYRFVSSHTVEE 1069          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = -1
Query:  410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751
            +LD +    + +     R+DG TP   RQ  +  + E +  K   +LS +AGG+G+ L  A  VI  +  W P   +QA DRAHRIGQ  +V V+  + ++TV++ + +    KL
Sbjct:  510 VLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKL 624          
The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
PKL_ARATH7.913e-1335.90CHD3-type chromatin-remodeling factor PICKLE OS=Ar... [more]
HRP1_SCHPO7.913e-1334.39Chromodomain helicase hrp1 OS=Schizosaccharomyces ... [more]
SWR1_NEUCR1.033e-1239.08Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 ... [more]
SWR1_CANAL1.033e-1234.95Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=... [more]
RA54B_MOUSE1.350e-1234.48DNA repair and recombination protein RAD54B OS=Mus... [more]
RA54B_CHICK1.350e-1237.61DNA repair and recombination protein RAD54B OS=Gal... [more]
ISW1_CAEEL1.350e-1234.78Chromatin-remodeling complex ATPase chain isw-1 OS... [more]
SWR1_KLULA1.763e-1228.93Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3... [more]
SWR1_CRYNE1.763e-1237.62Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 P... [more]
SMCA5_MOUSE1.763e-1233.91SWI/SNF-related matrix-associated actin-dependent ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006N06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bp
CTTTTTTTATAAACGATGTTATTGTATTCATCTACAAAACAGAGGAATAT
CCCTATAAAGCCTCATGTCAGTATTACACTTACACTGCCTGTCATATAGA
GATTCTTGTCTCTCACTAATTTGGAGTAGTAATCAATGTTCTCTGAGGCT
CCGCATATCAAAAGGGCACATTTTCATGTGTCTGTGTACATGTGATGCAT
AGACCGACGCATCTCAAAATATACATTTTATAGTGTGTGGATTAGAGCTT
TCGGTATTTTAGCTTCTGCTGATGTTCAGAGTCATCCACATTGTTGCAAC
GCTTCAGGAAGGAGTCGAGTGTTTTCTGCTTTGCAGGGCTGCTTCTTATT
TGACTGCTTGAAACTTCCAAACTATTTTCATGACCATCAAGCACCTGTCC
CAAATTTTCCAACTTGCTCCGAACAACATCCCATACTATGTCATCAACTG
TGTCATTTGCCAGTAGGTAGTATACATTTACGGAAGATACCTGGCCGATC
CTGTGAGCACGATCTTCAGCTTGAATGAGATCACCTGGAGTCCATGACAA
CTCCGCGAAAATAACAGTGCTTGCAGCCGTTAATGTTAAACCAACACCTC
CGGCTTTCATAGATAGCACTGCTGCCTTGACATCATCTTTCTCCTGAAAT
TCAGTAACCAAAGCTTGTCTTGAAGCAGGAGGGGTACCCCCATCAATCCG
AATGCAATGCACTTTCTTCTTAAGAAAAAGTTTATGTATTGCATCAAGCA
TGGGCTG
back to top