CN188821

Overview
NameCN188821
Unique NameCN188821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = -1
Query:  410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751
            +LD +    + +     R+DG TP   RQ  +  + E +  K   +LS +AGG+G+ L  A  VI  +  W P   +QA DRAHRIGQ  +V V+  + ++TV++ + +    KL
Sbjct:  511 VLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKL 625          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 45/135 (33.33%), Postives = 70/135 (51.85%), Query Frame = -1
Query:  368 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD--VVRSKLENL----GQVLDGHENSL 751
            MLD +      +  +  R+DG TP   R   + EF   +  K   +LS +AGG+G+ L  A  VI  +  W P   +QA DRAHRIGQ   V V+ L+   TV++ + +   V+ +L+ +    G+++D   N L
Sbjct:  459 MLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQL 593          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: HRP3_SCHPO (Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe GN=hrp3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 53/150 (35.33%), Postives = 79/150 (52.67%), Query Frame = -1
Query:  263 RIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAK--QKTLDSFLK-RCNNVDDSEHQQK 700
            R+DG  P A R+  +  F   +      +LS +AGG+G+ L  A TVI  +  W P   +QA  RAHRIGQ + V VY LL+ DT+++ V +  R K+     +L+    SL V+  Q  S   K   + L + LK   +N+  +E+ QK
Sbjct:  735 RLDGTVPAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKDTIEEDVLERARRKM-----ILEYAIISLGVTDKQKNSKNDKFSAEELSAILKFGASNMFKAENNQK 879          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: HELLS_HUMAN (Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = -1
Query:  401 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD--VVRSKLENL 751
            MLD +      +  +  R+DG    + R+  +  F    +V   ++S +AGG+G+ LTAA TVI  +  W P   +QA+DR HRIGQ   V VY L+  +T+D  + +    + KLE L
Sbjct:  627 MLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKL 745          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ERC6L_HUMAN (DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = -1
Query:  431 MLDAIHKLFLKKKVHCIRIDGG-TPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 751
            +L+ I +L   +    +RIDG  T    R+  +  FQ+  D    +L+ + GGVGLTLTAA+ V+  + SW P    QA DR +RIGQ  +V VY L+   TV++ ++
Sbjct:  488 ILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIY 595          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD7_MOUSE (Chromodomain-helicase-DNA-binding protein 7 OS=Mus musculus GN=Chd7 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 44/130 (33.85%), Postives = 70/130 (53.85%), Query Frame = -1
Query:  371 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL---ENLGQVLDGHENS 748
            LD +    ++++    RIDG      RQA +  F + D D    +L  +AGG+G+ LTAA T I  +  W P + +QA+ R HRIGQ  SV +Y L+  ++ +  ++D    KL   + + Q + G EN+
Sbjct: 1309 LDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENA 1438          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD7_HUMAN (Chromodomain-helicase-DNA-binding protein 7 OS=Homo sapiens GN=CHD7 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 44/130 (33.85%), Postives = 70/130 (53.85%), Query Frame = -1
Query:  371 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL---ENLGQVLDGHENS 748
            LD +    ++++    RIDG      RQA +  F + D D    +L  +AGG+G+ LTAA T I  +  W P + +QA+ R HRIGQ  SV +Y L+  ++ +  ++D    KL   + + Q + G EN+
Sbjct: 1319 LDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENA 1448          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_CANGA (Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = -1
Query:  443 IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 703
            +R+DG T    RQ L   F     +   +LS ++GG+G+ LT A TVIF +  W P    Q +DR HRIGQ   V++Y  ++  T++
Sbjct: 1222 MRLDGATKIEDRQILTERFNSDPKITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIE 1308          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD7_CHICK (Chromodomain-helicase-DNA-binding protein 7 OS=Gallus gallus GN=CHD7 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 44/130 (33.85%), Postives = 69/130 (53.08%), Query Frame = -1
Query:  371 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL---ENLGQVLDGHENS 748
            LD +    ++++    RIDG      RQA +  F   D D    +L  +AGG+G+ LTAA T I  +  W P + +QA+ R HRIGQ  SV +Y L+  ++ +  ++D    KL   + + Q + G EN+
Sbjct: 1320 LDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENA 1449          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_YEAST (Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = -1
Query:  443 IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 703
            +R+DG T    RQ L   F     +   +LS ++GG+G+ LT A TVIF +  W P    Q +DR HRIGQ   V++Y  ++  T++
Sbjct: 1290 MRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIE 1376          
The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SMCA5_HUMAN1.763e-1233.91SWI/SNF-related matrix-associated actin-dependent ... [more]
ISWI_DROME1.763e-1233.33Chromatin-remodeling complex ATPase chain Iswi OS=... [more]
HRP3_SCHPO1.763e-1235.33Chromodomain helicase hrp3 OS=Schizosaccharomyces ... [more]
HELLS_HUMAN1.763e-1235.29Lymphoid-specific helicase OS=Homo sapiens GN=HELL... [more]
ERC6L_HUMAN1.763e-1237.96DNA excision repair protein ERCC-6-like OS=Homo sa... [more]
CHD7_MOUSE2.302e-1233.85Chromodomain-helicase-DNA-binding protein 7 OS=Mus... [more]
CHD7_HUMAN2.302e-1233.85Chromodomain-helicase-DNA-binding protein 7 OS=Hom... [more]
SWR1_CANGA3.007e-1237.93Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=... [more]
CHD7_CHICK3.007e-1233.85Chromodomain-helicase-DNA-binding protein 7 OS=Gal... [more]
SWR1_YEAST3.927e-1237.93Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bp
CTTTTTTTATAAACGATGTTATTGTATTCATCTACAAAACAGAGGAATAT
CCCTATAAAGCCTCATGTCAGTATTACACTTACACTGCCTGTCATATAGA
GATTCTTGTCTCTCACTAATTTGGAGTAGTAATCAATGTTCTCTGAGGCT
CCGCATATCAAAAGGGCACATTTTCATGTGTCTGTGTACATGTGATGCAT
AGACCGACGCATCTCAAAATATACATTTTATAGTGTGTGGATTAGAGCTT
TCGGTATTTTAGCTTCTGCTGATGTTCAGAGTCATCCACATTGTTGCAAC
GCTTCAGGAAGGAGTCGAGTGTTTTCTGCTTTGCAGGGCTGCTTCTTATT
TGACTGCTTGAAACTTCCAAACTATTTTCATGACCATCAAGCACCTGTCC
CAAATTTTCCAACTTGCTCCGAACAACATCCCATACTATGTCATCAACTG
TGTCATTTGCCAGTAGGTAGTATACATTTACGGAAGATACCTGGCCGATC
CTGTGAGCACGATCTTCAGCTTGAATGAGATCACCTGGAGTCCATGACAA
CTCCGCGAAAATAACAGTGCTTGCAGCCGTTAATGTTAAACCAACACCTC
CGGCTTTCATAGATAGCACTGCTGCCTTGACATCATCTTTCTCCTGAAAT
TCAGTAACCAAAGCTTGTCTTGAAGCAGGAGGGGTACCCCCATCAATCCG
AATGCAATGCACTTTCTTCTTAAGAAAAAGTTTATGTATTGCATCAAGCA
TGGGCTG
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