CN188821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12 Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = -1 Query: 410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751 +LD + + + R+DG TP RQ + + E + K +LS +AGG+G+ L A VI + W P +QA DRAHRIGQ +V V+ + ++TV++ + + KL Sbjct: 511 VLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKL 625
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12 Identity = 45/135 (33.33%), Postives = 70/135 (51.85%), Query Frame = -1 Query: 368 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD--VVRSKLENL----GQVLDGHENSL 751 MLD + + + R+DG TP R + EF + K +LS +AGG+G+ L A VI + W P +QA DRAHRIGQ V V+ L+ TV++ + + V+ +L+ + G+++D N L Sbjct: 459 MLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQL 593
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: HRP3_SCHPO (Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe GN=hrp3 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12 Identity = 53/150 (35.33%), Postives = 79/150 (52.67%), Query Frame = -1 Query: 263 RIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAK--QKTLDSFLK-RCNNVDDSEHQQK 700 R+DG P A R+ + F + +LS +AGG+G+ L A TVI + W P +QA RAHRIGQ + V VY LL+ DT+++ V + R K+ +L+ SL V+ Q S K + L + LK +N+ +E+ QK Sbjct: 735 RLDGTVPAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKDTIEEDVLERARRKM-----ILEYAIISLGVTDKQKNSKNDKFSAEELSAILKFGASNMFKAENNQK 879
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: HELLS_HUMAN (Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12 Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = -1 Query: 401 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD--VVRSKLENL 751 MLD + + + R+DG + R+ + F +V ++S +AGG+G+ LTAA TVI + W P +QA+DR HRIGQ V VY L+ +T+D + + + KLE L Sbjct: 627 MLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKL 745
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ERC6L_HUMAN (DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12 Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = -1 Query: 431 MLDAIHKLFLKKKVHCIRIDGG-TPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 751 +L+ I +L + +RIDG T R+ + FQ+ D +L+ + GGVGLTLTAA+ V+ + SW P QA DR +RIGQ +V VY L+ TV++ ++ Sbjct: 488 ILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIY 595
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD7_MOUSE (Chromodomain-helicase-DNA-binding protein 7 OS=Mus musculus GN=Chd7 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12 Identity = 44/130 (33.85%), Postives = 70/130 (53.85%), Query Frame = -1 Query: 371 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL---ENLGQVLDGHENS 748 LD + ++++ RIDG RQA + F + D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ SV +Y L+ ++ + ++D KL + + Q + G EN+ Sbjct: 1309 LDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENA 1438
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD7_HUMAN (Chromodomain-helicase-DNA-binding protein 7 OS=Homo sapiens GN=CHD7 PE=1 SV=3) HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12 Identity = 44/130 (33.85%), Postives = 70/130 (53.85%), Query Frame = -1 Query: 371 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL---ENLGQVLDGHENS 748 LD + ++++ RIDG RQA + F + D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ SV +Y L+ ++ + ++D KL + + Q + G EN+ Sbjct: 1319 LDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENA 1448
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_CANGA (Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12 Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = -1 Query: 443 IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 703 +R+DG T RQ L F + +LS ++GG+G+ LT A TVIF + W P Q +DR HRIGQ V++Y ++ T++ Sbjct: 1222 MRLDGATKIEDRQILTERFNSDPKITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIE 1308
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD7_CHICK (Chromodomain-helicase-DNA-binding protein 7 OS=Gallus gallus GN=CHD7 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12 Identity = 44/130 (33.85%), Postives = 69/130 (53.08%), Query Frame = -1 Query: 371 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL---ENLGQVLDGHENS 748 LD + ++++ RIDG RQA + F D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ SV +Y L+ ++ + ++D KL + + Q + G EN+ Sbjct: 1320 LDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENA 1449
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_YEAST (Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12 Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = -1 Query: 443 IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 703 +R+DG T RQ L F + +LS ++GG+G+ LT A TVIF + W P Q +DR HRIGQ V++Y ++ T++ Sbjct: 1290 MRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIE 1376 The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 138
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bpback to top |