CN188815
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15 Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = -1 Query: 436 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 678 A E + FVGGL++ T + +L + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15 Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = -1 Query: 436 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 669 E + FVGGL++ T + L FS YG I E ++ DRET RSRGFGFVTF + + +DA+ GMNG+ +DGR I V++A Sbjct: 5 EGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15 Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = -1 Query: 436 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 678 A E + FVGGL++ T + +L + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15 Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = -1 Query: 436 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 678 A E + FVGGL++ T + +L + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.558e-15 Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = -1 Query: 436 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 669 E + F+GGL + T + SL + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+ +DGR I V++A Sbjct: 4 EGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15 Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = -1 Query: 436 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 669 E + F+GGL + T + L +AF+ YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15 Identity = 34/77 (44.16%), Postives = 56/77 (72.73%), Query Frame = -1 Query: 433 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 663 R +VG L+W D +L FS G ++E+++I DR++GRS+GFGFVT+ + +++AI+ ++G +LDGR I V+EA+ Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15 Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = -1 Query: 436 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 669 E + FVGGL + T + +L + FS++G I E ++ DRET RSRGFGF+TF + + DA+ MNG++LDGR I V+ A Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14 Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = -1 Query: 433 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 663 R +VG L+W D +L F+ G ++E+++I DR++GRS+GFGFVT + ++ AI +NG +LDGR I V+EA+ Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = -1 Query: 436 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 669 E + FVGGL + T + +L + FS++G I E ++ DRET RSRGFGF+TF + + D + MNG++LDGR I V+ A Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82 The following BLAST results are available for this feature:
BLAST of CN188815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188815 ID=CN188815; Name=CN188815; organism=Citrus sinensis; type=EST; length=702bpback to top |