CN188815

Overview
NameCN188815
Unique NameCN188815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:62..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-B PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  436 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 663
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  436 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 663
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: HNRPG_MOUSE (Heterogeneous nuclear ribonucleoprotein G OS=Mus musculus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = -1
Query:  436 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 678
            AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVT       +DA   MNG++LDG+ I V +A
Sbjct:    4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = -1
Query:  436 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 678
            AD   + F+GGL   T + SL   F  YG I E  ++ DRET +SRGF F+TF      + A+  MNG++LDG+ I V +A
Sbjct:    4 ADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = -1
Query:  436 DVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 675
            D   + +V  L+WA T   L +AF+     + +K+I DR +GRSRGFGF+TF   ++M  A++ MN   L+GR + +N A
Sbjct:  214 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  436 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 663
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 109          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  436 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 663
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: HNRGT_MACFA (RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  436 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 678
            AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF    + + A   MNG++LDG+ I V +A
Sbjct:    4 ADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDMNGKSLDGKAIKVAQA 84          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  436 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 663
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPN-PIIDGRKANVNLA 107          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  436 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 663
            + FVGGL + TTDSSL + F  +G+I E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPN-PIIDGRKANVNLA 86          
The following BLAST results are available for this feature:
BLAST of CN188815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RB24B_XENLA5.898e-1248.68RNA-binding protein 24-B OS=Xenopus laevis GN=rbm2... [more]
RB24A_XENLA5.898e-1248.68RNA-binding protein 24-A OS=Xenopus laevis GN=rbm2... [more]
HNRPG_MOUSE5.898e-1243.21Heterogeneous nuclear ribonucleoprotein G OS=Mus m... [more]
HNRPG_BOVIN7.703e-1243.21Heterogeneous nuclear ribonucleoprotein G OS=Bos t... [more]
ROC5_NICSY1.006e-1140.0033 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM38_HUMAN1.314e-1147.37RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE... [more]
RBM38_XENTR1.716e-1147.37RNA-binding protein 38 OS=Xenopus tropicalis GN=rb... [more]
HNRGT_MACFA1.716e-1143.21RNA-binding motif protein, X-linked-like-2 OS=Maca... [more]
RBM38_MOUSE2.241e-1147.37RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE... [more]
RBM24_DANRE2.241e-1147.37RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188815 ID=CN188815; Name=CN188815; organism=Citrus sinensis; type=EST; length=702bp
TTTTTTTTTTTTTTTTTGAAAAGAACTGTAATTCATTTCCTTTTTTTTTT
CAACAATTAACCAAACAGGGAGAACGAAACAACACAGGATAACAGGAACC
GATCAAAACGACACATCATAACCCAAGGAAAATATCAAAACACGGAACGG
TAACCTTCAACTCCTAATTTATCCTACAAAACCCTAGTTCCTCCAGCTAC
CGCCATCAAAAGCACCGCTCCTTGAGTATCGGGAACCACCATCACCGCCA
TATCCACCGTCACGGCTGTAACCACCTTCACGGCGGCCACCATATCCACC
GCCGCCACCTCCGTATCCGCGGCTCCCACCGTATCCACCGCCACCACCAC
TTTCACGGCGTCCACCACCTCCATATCCACCACCGCCACGGCTTCCGTAA
CCGCCACCGGCACCGCCACCGCTTCCACGGGACTGGGCCTCGTTGACTGT
TATGTTACGGCCGTCCAAATTCTGGCCGTTCATGCCTTCGATTGCGTCCC
TCATCGACTTCTCATCGCGGAAGGTAACGAATCCAAATCCTCTGGATCTT
CCAGTCTCGCGATCGTTAATAATCTTCGATTCAAGGATATCGCCGTAAGC
ACTGAAGGCCTCATGGAGAGAGCTGTCAGTGGTGGCCCAGGCCAGGCCGC
CTACGAAGCACCGAAACTCGACATCGGCTGAAGCCCTTAGGAGAAAACTT
GA
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