CN188815
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-B PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12 Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -1 Query: 436 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 663 + FVGGL + TTDSSL + F +GDI E+ +I DR+TG+SRG+GFVT D + A + N +DGR VN A Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-A PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12 Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -1 Query: 436 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 663 + FVGGL + TTDSSL + F +GDI E+ +I DR+TG+SRG+GFVT D + A + N +DGR VN A Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: HNRPG_MOUSE (Heterogeneous nuclear ribonucleoprotein G OS=Mus musculus GN=Rbmx PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12 Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = -1 Query: 436 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 678 AD + F+GGL T + +L F YG I+E ++ DRET +SRGF FVT +DA MNG++LDG+ I V +A Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA 84
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12 Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = -1 Query: 436 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 678 AD + F+GGL T + SL F YG I E ++ DRET +SRGF F+TF + A+ MNG++LDG+ I V +A Sbjct: 4 ADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11 Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = -1 Query: 436 DVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 675 D + +V L+WA T L +AF+ + +K+I DR +GRSRGFGF+TF ++M A++ MN L+GR + +N A Sbjct: 214 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11 Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -1 Query: 436 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 663 + FVGGL + TTD+SL + F +GDI E+ +I DR+TG+SRG+GFVT D + A + N +DGR VN A Sbjct: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 109
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11 Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -1 Query: 436 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 663 + FVGGL + TTD+SL + F +GDI E+ +I DR+TG+SRG+GFVT D + A + N +DGR VN A Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: HNRGT_MACFA (RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11 Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = -1 Query: 436 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 678 AD + F+GGL T + +L F YG I+E ++ DRET +SRGF FVTF + + A MNG++LDG+ I V +A Sbjct: 4 ADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDMNGKSLDGKAIKVAQA 84
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11 Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -1 Query: 436 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 663 + FVGGL + TTD+SL + F +GDI E+ +I DR+TG+SRG+GFVT D + A + N +DGR VN A Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPN-PIIDGRKANVNLA 107
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11 Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -1 Query: 436 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 663 + FVGGL + TTDSSL + F +G+I E+ +I DR+TG+SRG+GFVT D + A + N +DGR VN A Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPN-PIIDGRKANVNLA 86 The following BLAST results are available for this feature:
BLAST of CN188815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188815 ID=CN188815; Name=CN188815; organism=Citrus sinensis; type=EST; length=702bpback to top |