CN181962
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181962 vs. ExPASy Swiss-Prot
Match: RS3_PYRCJ (30S ribosomal protein S3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps3p PE=3 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 3.720e-19 Identity = 55/169 (32.54%), Postives = 89/169 (52.66%), Query Frame = 2 Query: 146 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 649 + E L LA+ GY E+ TP+ T I+I A R ++G KG ++E++S++ + +++ K+ L A + + G+ RR + +R +ME+GAKG E++VSGKL +RAK K G + G + AV HVLL+ G+ GI+V+I Sbjct: 24 IKEFLEYRLAKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSSILANKLGVENPQIDVIDVSKIEAPELFPKVVAYRIANAMARGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERAKFEKITYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192
BLAST of CN181962 vs. ExPASy Swiss-Prot
Match: RS3_METS5 (30S ribosomal protein S3P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps3p PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.720e-19 Identity = 57/181 (31.49%), Postives = 95/181 (52.49%), Query Frame = 2 Query: 107 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 649 K+ F+ + ++E L +E Y+G E+ TPM T + I A R ++G+ G+ I+ L +++K F + ++ + L A A L L G RRA + +R IM +GA G EVIVSGK+ ++RAK K K+G + +G ++ +D A+ L+ G+ G++V I Sbjct: 5 KKYFLQKSMTRVMVDEFLAKEYYNAEYAGSEISKTPMGTRVTIYAGRPAIIIGKDGKTIKRLAQILEKYFNL--ENPQITVTQPEKPELNARVMAFRLAVTLEKGYHFRRAAFMTIRRIMNAGALGAEVIVSGKITSERAKFEKLKEGIVYKTGNNLDVMVDRAIAIATLKMGIYGVEVVI 183
BLAST of CN181962 vs. ExPASy Swiss-Prot
Match: RS3_STAMF (30S ribosomal protein S3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps3p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18 Identity = 57/169 (33.73%), Postives = 92/169 (54.44%), Query Frame = 2 Query: 146 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 652 L+E L + GY+G+E+ TP ++I A ++G G IR+L +++Q F +V + V + L A A + L + RR +LR +ME+GA G E+I+SGKLR++RA+ K K G + +G V+ +D AV LL++GV G++V I+ Sbjct: 20 LDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVVIV 186
BLAST of CN181962 vs. ExPASy Swiss-Prot
Match: RS3_PYRIL (30S ribosomal protein S3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3p PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18 Identity = 51/169 (30.18%), Postives = 91/169 (53.85%), Query Frame = 2 Query: 146 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 649 + E L +L++ GY E+ TP+ T I+I A R ++G+KG ++E+++++ + +++ K+ + A + + G+ RR + +R +ME+GAKG E++VSGKL +RA+ K G + G + AV HVLL+ G+ GI+V+I Sbjct: 24 IKEFLEYKLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGKKGVIVKEISNILVNKLGVENPQIDVIDVSKIEAPEMFPKVIAYRIANAMAKGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERARFEKLTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192
BLAST of CN181962 vs. ExPASy Swiss-Prot
Match: RS3_PICTO (30S ribosomal protein S3P OS=Picrophilus torridus GN=rps3p PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17 Identity = 52/185 (28.11%), Postives = 97/185 (52.43%), Query Frame = 2 Query: 104 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLS 658 K+++FV D + ++E L +E G+ G+E++ TP T I + R V+G G +I+E+T ++KRF +E+ ++VN L ++ + L G R+A LR +++ A G + + GK+ +RA++ KF G + SG+P ++ L+ G++G+ V+I+ S Sbjct: 2 KEKRFVNDNIKRLLVSEYLRKENDNAGFGGMEMKRTPYGTNITLYVNRPGLVIGRHGTKIKEMTETLEKRFAIESPQIEV--KEVNTPDLNPQIASKKIALSLEKGWNYRKAGNTSLRKMIDLNAPGVLIRIGGKISGERARAQKFMFGKIKYSGEPARSGVEYGFSEAKLKTGIIGVSVRILKS 184
BLAST of CN181962 vs. ExPASy Swiss-Prot
Match: RS3_PYRAE (30S ribosomal protein S3P OS=Pyrobaculum aerophilum GN=rps3p PE=3 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17 Identity = 51/169 (30.18%), Postives = 89/169 (52.66%), Query Frame = 2 Query: 146 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 649 + E L L++ GY E+ TP+ T I+I A R ++G KG ++E+++++ + +++ K+ + A + + G+ RR + +R +ME+GAKG E++VSGKL +RA+ K G + G + AV HVLL+ G+ GI+V+I Sbjct: 24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192
BLAST of CN181962 vs. ExPASy Swiss-Prot
Match: RS3_PYRAR (30S ribosomal protein S3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps3p PE=3 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17 Identity = 50/169 (29.59%), Postives = 88/169 (52.07%), Query Frame = 2 Query: 146 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 649 + E L L++ GY E+ TP+ T I+I A R ++G KG ++E+++++ + +++ K+ + A + + G+ RR + +R + E+GAKG E++VSGKL +RA+ K G + G + AV HVLL+ G+ GI+V+I Sbjct: 24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSNILATKLGVENPQIDVIDVSKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFAAIRQLTEAGAKGFEIVVSGKLSTERARFEKQTFGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192
BLAST of CN181962 vs. ExPASy Swiss-Prot
Match: RS3_THEVO (30S ribosomal protein S3P OS=Thermoplasma volcanium GN=rps3p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15 Identity = 50/183 (27.32%), Postives = 97/183 (53.01%), Query Frame = 2 Query: 104 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 652 K+RKFV + V + E L +E G+ + ++ TP T I + R V+G +G +++++T ++K++ +E+ + V + L A+ + L G + R+A L+ +++GA+G + +SGK+ +RA+ KF G + SG+P ++ + L+ G+LG+ VKI+ Sbjct: 2 KERKFVNEAVKRLLVYEYLVKETENAGFGKMSMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTETLEKKYAIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLKRTIDAGARGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMLVGFSTAKLKVGILGVTVKIL 182
BLAST of CN181962 vs. ExPASy Swiss-Prot
Match: RS3_THEAC (30S ribosomal protein S3P OS=Thermoplasma acidophilum GN=rps3p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15 Identity = 49/183 (26.78%), Postives = 97/183 (53.01%), Query Frame = 2 Query: 104 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 652 K+RKF+ + V + E + +E G+ + ++ TP T I + R V+G +G +++++T ++K++ +E+ + V + L A+ + L G + R+A L +++GAKG + +SGK+ +RA+ KF G + SG+P ++ + + L+ G+LG+ VKI+ Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRTIQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGVTVKIL 182
BLAST of CN181962 vs. ExPASy Swiss-Prot
Match: RS3_CENSY (30S ribosomal protein S3P OS=Cenarchaeum symbiosum GN=rps3p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15 Identity = 53/170 (31.18%), Postives = 84/170 (49.41%), Query Frame = 2 Query: 143 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME-SGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 649 +L E L + + G+SGVEV P T+I + TR V+G KG IRELT ++K F V++ +++ L + + G A RRA ++ IME A G ++ +SGKLR R+ K G + +G + + V HV G++GI+++I Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDLKSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITISGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIRIRI 183 The following BLAST results are available for this feature:
BLAST of CN181962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181962 ID=CN181962; Name=CN181962; organism=Citrus sinensis; type=EST; length=695bpback to top |