CN181961

Overview
NameCN181961
Unique NameCN181961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS3_BOVIN (40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.774e-31
Identity = 66/91 (72.53%), Postives = 71/91 (78.02%), Query Frame = -3
Query:  290 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 562
            IMESGAKGCEV+  GKL  QRAKSMKF +G M+ SG P N Y+D AVRHV LRQGVLGIKVKIML WDP GK GP  PLPD V+I  PKDE
Sbjct:  126 IMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS3_AMBME (40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.774e-31
Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = -3
Query:  290 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 562
            IMESG+KGCEV+  GKL  QRAKSMKF +G M+ SG P N Y+D AVRHV LRQGVLGIKVKIML+WDP+GK GP  PLPD V+I  PKDE
Sbjct:  126 IMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS3_ICTPU (40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.235e-31
Identity = 70/120 (58.33%), Postives = 81/120 (67.50%), Query Frame = -3
Query:  230 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKD---------EEEYVKPTLVATDIGVPIQGA 562
            IMESGAKGCEV+  GKL  QRAKSMKF +G M+ SG P N Y+D AVRHV LRQGVLGIKVKIML WDP+GK GP  PLPD V+I  PK+         E++  KP +     G P+  A
Sbjct:  126 IMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEILPTTPVSEQKGAKPEVPVMPQGAPVPTA 245          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS3_MANSE (40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.536e-29
Identity = 61/98 (62.24%), Postives = 72/98 (73.47%), Query Frame = -3
Query:  269 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPT 562
            IMESGA+GCEV+  GKL  QRAKSMKF +G M+ SG P N+Y++ A RHV LRQGVLGIKVKIML WD  GK GP  P PD + +  PKDE   ++PT
Sbjct:  127 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEPT 224          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS3_DROME (40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.421e-29
Identity = 61/97 (62.89%), Postives = 73/97 (75.26%), Query Frame = -3
Query:  272 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKP 562
            IMESGAKGCEV+  GKL  QRAKSMKF +G M+ SG P N+Y++ A RHV LRQGVLGIKVK+ML +DP  K GP  PLPD V++  PK+E+ Y  P
Sbjct:  128 IMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETP 224          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS3_SCHPO (40S ribosomal protein S3 OS=Schizosaccharomyces pombe GN=rps3 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.030e-25
Identity = 61/111 (54.95%), Postives = 75/111 (67.57%), Query Frame = -3
Query:  230 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVATDIGVPIQGA 562
            +ME+GAKGCEV+  GKL A RAKSMKF +G+M+ SGQP  ++ID A RHV LRQGVLG+KVKIML   P  K      LPD+V +  PK+EE   KP  V   I  P++ A
Sbjct:  128 VMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIML---PEPKTRQKKSLPDIVVVLDPKEEEPITKPYTV---INQPVEAA 232          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS3_CAEEL (40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.997e-25
Identity = 58/91 (63.74%), Postives = 68/91 (74.73%), Query Frame = -3
Query:  290 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 562
            IMESGA+G EVI  GKL  QRAK+MKF +G M+ SG P N+YI  AVRHV LRQGV+GIKVKIML +DP G+ GP   LPD V I  P++E
Sbjct:  128 IMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEE 218          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS3_YEAST (40S ribosomal protein S3 OS=Saccharomyces cerevisiae GN=RPS3 PE=1 SV=5)

HSP 1 Score: 112.849 bits (281), Expect = 1.139e-24
Identity = 57/99 (57.58%), Postives = 72/99 (72.73%), Query Frame = -3
Query:  266 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTL 562
            +MESGAKGCEV+  GKL A RAK+MKF +G+++ SGQP N++ID A RHV +RQGVLGIKVKIM   DP   +     LPD VTI  PK+EE  + P++
Sbjct:  126 VMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMR--DPAKSRTGPKALPDAVTIIEPKEEEPILAPSV 222          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS3_DICDI (40S ribosomal protein S3 OS=Dictyostelium discoideum GN=rps3 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.102e-22
Identity = 54/87 (62.07%), Postives = 62/87 (71.26%), Query Frame = -3
Query:  308 IMESGAKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGK--QGPTTPLPDLVTI 562
            IM  GAKGCEVI  GKL AQRAKSMKF++GYM+ SGQP  ++IDFA RHV LRQG LG+KV IML +D   K       P PD+V I
Sbjct:  129 IMTRGAKGCEVIVSGKLRAQRAKSMKFRDGYMIKSGQPSKDFIDFACRHVLLRQGTLGVKVAIMLPYDETRKIHGACNIPQPDVVVI 215          
BLAST of CN181961 vs. ExPASy Swiss-Prot
Match: RS3_ENCCU (40S ribosomal protein S3 OS=Encephalitozoon cuniculi GN=RPS3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.004e-17
Identity = 41/85 (48.24%), Postives = 58/85 (68.24%), Query Frame = -3
Query:  293 AKGCEVIFRGKLGAQRAKSMKFKEGYMVFSGQPGNEYIDFAVRHVFLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKD 547
            A+GC++I  GKL  QRAKS+KF++G ++ SG    +YI+     V  +QGV+GI+V+IML +DP G  GP  PLPD +TI  P +
Sbjct:  142 AQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIMLPYDPEGVLGPNYPLPDRITILEPSE 226          
The following BLAST results are available for this feature:
BLAST of CN181961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS3_BOVIN4.774e-3172.5340S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=... [more]
RS3_AMBME4.774e-3171.4340S ribosomal protein S3 OS=Ambystoma mexicanum GN... [more]
RS3_ICTPU6.235e-3158.3340S ribosomal protein S3 OS=Ictalurus punctatus GN... [more]
RS3_MANSE1.536e-2962.2440S ribosomal protein S3 OS=Manduca sexta GN=RpS3 ... [more]
RS3_DROME3.421e-2962.8940S ribosomal protein S3 OS=Drosophila melanogaste... [more]
RS3_SCHPO1.030e-2554.9540S ribosomal protein S3 OS=Schizosaccharomyces po... [more]
RS3_CAEEL2.997e-2563.7440S ribosomal protein S3 OS=Caenorhabditis elegans... [more]
RS3_YEAST1.139e-2457.5840S ribosomal protein S3 OS=Saccharomyces cerevisi... [more]
RS3_DICDI3.102e-2262.0740S ribosomal protein S3 OS=Dictyostelium discoide... [more]
RS3_ENCCU3.004e-1748.2440S ribosomal protein S3 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181961 ID=CN181961; Name=CN181961; organism=Citrus sinensis; type=EST; length=564bp
TTACAGCTCTACCCTTTAAAATACCAAAAAAACAATGGGCAACCGATTAA
ACAAGAAAATTGGTTGATAATTATGAAATCTTTAACAATACTGATGACTA
CCGTATATCAAAATTAACCCCATGGAGTCTGAGGTATCCTTCATTAGCAA
CAAAAATGAAAACTAAAGCACTTCCAATACCATTGATAAAATATCAAAAA
AGATGAAACTATACCCCCCTTCGGCCTTAAGCCCCTTGGATTGGGACCCC
AATATCAGTAGCCACCAATGTTGGCTTGACATACTCCTCTTCATCCTTGG
GGGAGTGGATTGTTACCAAATCCGGTAAAGGGGTAGTAGGACCTTGCTTT
CCATTAGGATCCCAACTAAGCATGATCTTGACCTTAATACCAAGTACACC
CTGTCTCAAAAAAACATGTCTCACAGCAAAGTCAATATATTCATTCCCTG
GCTGACCCGAAAAAACCATATATCCCTCCTTAAACTTCATTGATTTTGCA
CGTTGGGCCCCCAACTTTCCCCTGAAAATGACCTCACATCCCTTGGCTCC
ACTTTCCATAATGA
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