CN181956

Overview
NameCN181956
Unique NameCN181956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5967 contig Csv1_Contig5967:6..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_META3 (50S ribosomal protein L2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.288e-27
Identity = 73/169 (43.20%), Postives = 96/169 (56.80%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKE-LFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MG+ +++Q +G G+  + S TH RKG  ++R  D  ER   + G I +I+HDPGR +P+ARV      RY + +E L +  EGM     + CG  A +  GNVLPL  +PEG  V N+E   GD G   R  G YA VI+H  D   T IKLPSG  K +   CRA IG
Sbjct:    1 MGKRLQSQNRGKGTPRYTSPTHKRKGAVKYRKFDESERKDKIIGTIIDILHDPGRSSPIARV------RYDNGEERLILIPEGMKIKDTIECGISAEIKPGNVLPLGEVPEGIPVYNIETIPGDGGKLVRSGGCYAHVITH--DVSKTIIKLPSGHMKTLNPMCRATIG 161          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_THEGJ (50S ribosomal protein L2P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.212e-27
Identity = 68/168 (40.48%), Postives = 98/168 (58.33%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MG+ +  QR+G G+  F++ +H  +G  ++  L+  +    L+GV+ EI+HDPGR AP+ARV F         K+L +A EG+  GQ +Y G +A + +GN LPL  IPEG  V N+E   GD G + R  G YA+V+S   + D   ++LPSG  K     CRA IG
Sbjct:    1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVKYVPLNIVKEKT-LRGVVEEILHDPGRTAPVARVKFE-----DGTKKLILAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYNIEGVPGDGGKYVRAGGTYALVVSR--ERDKVIVQLPSGELKQFKPECRATIG 160          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_PYRCJ (50S ribosomal protein L2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.073e-26
Identity = 73/169 (43.20%), Postives = 97/169 (57.40%), Query Frame = 1
Query:   49 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELF-VAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MG+ I  QR+G  GS F+S +  R GP R+     G      +G++ EI+H+PG  AP+A++      R ++  E F  AAEG+Y GQ +  G  A   VGNVLPL  IPEG +V NVE   GD G FAR  G YA+VI   P+ + T ++LPSG    V +  RA IG
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPNISG------RGIVVEILHEPGLNAPVAKI------RMENGVEFFNYAAEGLYVGQVIQVGPDAPPAVGNVLPLGKIPEGTMVFNVEKRFGDGGKFARSGGTYALVIGQRPEENKTIVRLPSGRVIEVDARGRATIG 157          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_THEPD (50S ribosomal protein L2P OS=Thermofilum pendens (strain Hrk 5) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.389e-26
Identity = 71/169 (42.01%), Postives = 101/169 (59.76%), Query Frame = 1
Query:   49 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGE-RNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MG+ +  QR+G  GSVF++    R GPAR+   +  E +N  L GV+ +++H+PGRGAPLA V F         K   +  EG+  GQ +Y G KA  V+G+++ + ++PEG +V N+E   GD G  AR SG YA+V++H+  N  T I+LPS   K V S  RA IG
Sbjct:    1 MGKRLLVQRRGRGGSVFRNPGWKRLGPARYPPYNPEEFKNKVLVGVVKDLLHEPGRGAPLALVEFE-----DGTKMYMIPPEGLAVGQKIYYGAKAPAVLGSIVEIGNVPEGTIVSNIEIRPGDGGKLARSSGAYALVLAHS--NGKTLIQLPSKKVKEVSSEARATIG 162          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.076e-26
Identity = 66/168 (39.29%), Postives = 90/168 (53.57%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MG+ IR QR G G   +++ +H  +G    R  D  E+ G + G + E++HDP R AP+ARV F        ++ L +  EG   G  + CG  A +  GN LPL  IPEG  + N+E   GD G FAR  G YA +I+H  D   T ++LPSG  +     CRA IG
Sbjct:    1 MGKRIRPQRLGRGGPTYRAPSHRYRGRIEHRPYDEQEKKGKVVGKVVELLHDPARNAPVARVRFE-----DGEERLILVPEGTKVGDIIECGVSAEIKPGNTLPLAEIPEGVPIFNIEGQPGDGGKFARAPGCYATIIAH--DVGRTYVQLPSGKVRTFDPRCRATIG 161          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_PYRAE (50S ribosomal protein L2P OS=Pyrobaculum aerophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.079e-26
Identity = 70/168 (41.67%), Postives = 97/168 (57.74%), Query Frame = 1
Query:   49 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MG+ I  QR+G  GS F+S +  R GP R+  L  G  +G  KG + +I+H+PG  AP+A++   +   + +      AAEG+Y GQ V  G+ A+   GN++ L  IPEG ++ NVE   GD G FAR  G YAVVI   P+ + T I+LPSG    V S  RA +G
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPL--GVISG--KGYVVDILHEPGLNAPVAKIVTENGVEFFNY-----AAEGLYVGQVVEIGKGASPKTGNIMILGEIPEGTMIFNVEKRAGDGGKFARAGGTYAVVIGQKPEENKTIIRLPSGRTVEVDSRGRATVG 159          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.079e-26
Identity = 66/168 (39.29%), Postives = 96/168 (57.14%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGSVFKSHTHHR-KGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MG+ +  QR+G G+       HR K   R+RS D  E+ G +KG++T+I+HDP R AP+A V F +      +K+  +A E +     + CG  A +  GN LPL  IPEG  + ++E+  GD G F R SG YA +I+H  D + + ++LPSG  K +   CRA IG
Sbjct:    1 MGKRLIIQRRGRGTPAHRVASHRFKDKIRYRSYDALEKEGSIKGIVTDIVHDPARTAPIAEVKFENG-----EKKFILAPESIQIDDEIECGISAPIKFGNTLPLAEIPEGTPIYDIENTPGDGGRFVRSSGTYASLITH--DANQSVVELPSGELKYLNPRCRASIG 161          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.476e-25
Identity = 69/168 (41.07%), Postives = 92/168 (54.76%), Query Frame = 1
Query:   49 MGRVIRAQRKGAG-SVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MGR I+ QR+G G S F++ +H  K     +     E    L G + ++ HDP R AP+ARV F         + L +A+EG+  G  +  G  AT+  GN LPL  IPEG  VCNVE H GD G FAR  G  A +++H  + D T ++LPSG  K +   CRA IG
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKRT---EDTDVLAGEVIDVEHDPARSAPVARVAFE-----DDDQRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIG 158          

HSP 2 Score: 21.1718 bits (43), Expect = 1.476e-25
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  569 RTEKPLLKAG 598
            RTEKP +KAG
Sbjct:  165 RTEKPFVKAG 174          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_HALS3 (50S ribosomal protein L2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.476e-25
Identity = 69/168 (41.07%), Postives = 92/168 (54.76%), Query Frame = 1
Query:   49 MGRVIRAQRKGAG-SVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MGR I+ QR+G G S F++ +H  K     +     E    L G + ++ HDP R AP+ARV F         + L +A+EG+  G  +  G  AT+  GN LPL  IPEG  VCNVE H GD G FAR  G  A +++H  + D T ++LPSG  K +   CRA IG
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKRT---EDTDVLAGEVIDVEHDPARSAPVARVAFE-----DDDQRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIG 158          

HSP 2 Score: 21.1718 bits (43), Expect = 1.476e-25
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  569 RTEKPLLKAG 598
            RTEKP +KAG
Sbjct:  165 RTEKPFVKAG 174          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_PYRIL (50S ribosomal protein L2P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.549e-25
Identity = 69/168 (41.07%), Postives = 93/168 (55.36%), Query Frame = 1
Query:   49 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MG+ I  QR+G  GS F+S +  R GP R+  L+     GY    + EI+H+PG  AP+AR+   +   +     L  AAEG+Y GQ +  G  A    GN++ L  +PEG +V NVE   GD G FAR  G YAVV+   P+ + T I+LPSG    V S  RA +G
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPLNVTVGRGY----VVEILHEPGLNAPVARIRLENGVEF-----LNFAAEGLYVGQEIEVGDLAAPKTGNIVILGRVPEGTMVFNVEKRAGDGGKFARAGGTYAVVVGQKPEENKTIIRLPSGKVVEVDSRGRATVG 159          
The following BLAST results are available for this feature:
BLAST of CN181956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_META36.288e-2743.2050S ribosomal protein L2P OS=Methanococcus aeolicu... [more]
RL2_THEGJ8.212e-2740.4850S ribosomal protein L2P OS=Thermococcus gammatol... [more]
RL2_PYRCJ1.073e-2643.2050S ribosomal protein L2P OS=Pyrobaculum calidifon... [more]
RL2_THEPD2.389e-2642.0150S ribosomal protein L2P OS=Thermofilum pendens (... [more]
RL2_METKA4.076e-2639.2950S ribosomal protein L2P OS=Methanopyrus kandleri... [more]
RL2_PYRAE9.079e-2641.6750S ribosomal protein L2P OS=Pyrobaculum aerophilu... [more]
RL2_METS39.079e-2639.2950S ribosomal protein L2P OS=Methanobrevibacter sm... [more]
RL2_HALSA1.476e-2541.0750S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_HALS31.476e-2541.0750S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_PYRIL1.549e-2541.0750S ribosomal protein L2P OS=Pyrobaculum islandicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181956 ID=CN181956; Name=CN181956; organism=Citrus sinensis; type=EST; length=600bp
CAAAAAGCCCCAAAACCCTAGACAGAGAGTCACGGCGAGTCGATTCAAAT
GGGACGAGTCATTAGAGCACAGCGTAAGGGAGCGGGCTCCGTCTTCAAGT
CGCACACACACCACCGCAAGGGCCCGGCCAGGTTCCGCTCGCTTGATTTC
GGGGAACGCAACGGCTACCTGAAGGGAGTCATAACGGAGATCATCCATGA
TCCTGGCCGCGGCGCCCCGCTGGCCCGGGTCACGTTTCGTCACCCGTTTA
GGTACCAGCACCAGAAGGAGCTGTTCGTAGCGGCTGAAGGGATGTACACT
GGGCAGTTCGTGTACTGCGGAAGGAAGGCGACTTTGGTTGTCGGAAATGT
GTTGCCCTTGCGATCGATCCCTGAAGGAGCGGTGGTTTGTAATGTGGAGC
ATCACGTGGGTGATCGCGGTGTCTTTGCCAGATGTTCGGGTGATTATGCT
GTTGTCATTAGTCATAATCCAGATAACGACACTACTCGGATTAAGCTCCC
ATCTGGTGCCAAGAAGATTGTGCCGAGTGGGTGCCGTGCTATGATTGGTC
AAAGTTGCCGGTGGAGGCAGAACAGAGAAGCCATTGTTGAAGGCAGGAAA
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