CN181956
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_META3 (50S ribosomal protein L2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl2p PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 6.288e-27 Identity = 73/169 (43.20%), Postives = 96/169 (56.80%), Query Frame = 1 Query: 49 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKE-LFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 MG+ +++Q +G G+ + S TH RKG ++R D ER + G I +I+HDPGR +P+ARV RY + +E L + EGM + CG A + GNVLPL +PEG V N+E GD G R G YA VI+H D T IKLPSG K + CRA IG Sbjct: 1 MGKRLQSQNRGKGTPRYTSPTHKRKGAVKYRKFDESERKDKIIGTIIDILHDPGRSSPIARV------RYDNGEERLILIPEGMKIKDTIECGISAEIKPGNVLPLGEVPEGIPVYNIETIPGDGGKLVRSGGCYAHVITH--DVSKTIIKLPSGHMKTLNPMCRATIG 161
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_THEGJ (50S ribosomal protein L2P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl2p PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 8.212e-27 Identity = 68/168 (40.48%), Postives = 98/168 (58.33%), Query Frame = 1 Query: 49 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 MG+ + QR+G G+ F++ +H +G ++ L+ + L+GV+ EI+HDPGR AP+ARV F K+L +A EG+ GQ +Y G +A + +GN LPL IPEG V N+E GD G + R G YA+V+S + D ++LPSG K CRA IG Sbjct: 1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVKYVPLNIVKEKT-LRGVVEEILHDPGRTAPVARVKFE-----DGTKKLILAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYNIEGVPGDGGKYVRAGGTYALVVSR--ERDKVIVQLPSGELKQFKPECRATIG 160
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_PYRCJ (50S ribosomal protein L2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.073e-26 Identity = 73/169 (43.20%), Postives = 97/169 (57.40%), Query Frame = 1 Query: 49 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELF-VAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 MG+ I QR+G GS F+S + R GP R+ G +G++ EI+H+PG AP+A++ R ++ E F AAEG+Y GQ + G A VGNVLPL IPEG +V NVE GD G FAR G YA+VI P+ + T ++LPSG V + RA IG Sbjct: 1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPNISG------RGIVVEILHEPGLNAPVAKI------RMENGVEFFNYAAEGLYVGQVIQVGPDAPPAVGNVLPLGKIPEGTMVFNVEKRFGDGGKFARSGGTYALVIGQRPEENKTIVRLPSGRVIEVDARGRATIG 157
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_THEPD (50S ribosomal protein L2P OS=Thermofilum pendens (strain Hrk 5) GN=rpl2p PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.389e-26 Identity = 71/169 (42.01%), Postives = 101/169 (59.76%), Query Frame = 1 Query: 49 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGE-RNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 MG+ + QR+G GSVF++ R GPAR+ + E +N L GV+ +++H+PGRGAPLA V F K + EG+ GQ +Y G KA V+G+++ + ++PEG +V N+E GD G AR SG YA+V++H+ N T I+LPS K V S RA IG Sbjct: 1 MGKRLLVQRRGRGGSVFRNPGWKRLGPARYPPYNPEEFKNKVLVGVVKDLLHEPGRGAPLALVEFE-----DGTKMYMIPPEGLAVGQKIYYGAKAPAVLGSIVEIGNVPEGTIVSNIEIRPGDGGKLARSSGAYALVLAHS--NGKTLIQLPSKKVKEVSSEARATIG 162
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 4.076e-26 Identity = 66/168 (39.29%), Postives = 90/168 (53.57%), Query Frame = 1 Query: 49 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 MG+ IR QR G G +++ +H +G R D E+ G + G + E++HDP R AP+ARV F ++ L + EG G + CG A + GN LPL IPEG + N+E GD G FAR G YA +I+H D T ++LPSG + CRA IG Sbjct: 1 MGKRIRPQRLGRGGPTYRAPSHRYRGRIEHRPYDEQEKKGKVVGKVVELLHDPARNAPVARVRFE-----DGEERLILVPEGTKVGDIIECGVSAEIKPGNTLPLAEIPEGVPIFNIEGQPGDGGKFARAPGCYATIIAH--DVGRTYVQLPSGKVRTFDPRCRATIG 161
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_PYRAE (50S ribosomal protein L2P OS=Pyrobaculum aerophilum GN=rpl2p PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 9.079e-26 Identity = 70/168 (41.67%), Postives = 97/168 (57.74%), Query Frame = 1 Query: 49 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 MG+ I QR+G GS F+S + R GP R+ L G +G KG + +I+H+PG AP+A++ + + + AAEG+Y GQ V G+ A+ GN++ L IPEG ++ NVE GD G FAR G YAVVI P+ + T I+LPSG V S RA +G Sbjct: 1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPL--GVISG--KGYVVDILHEPGLNAPVAKIVTENGVEFFNY-----AAEGLYVGQVVEIGKGASPKTGNIMILGEIPEGTMIFNVEKRAGDGGKFARAGGTYAVVIGQKPEENKTIIRLPSGRTVEVDSRGRATVG 159
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 9.079e-26 Identity = 66/168 (39.29%), Postives = 96/168 (57.14%), Query Frame = 1 Query: 49 MGRVIRAQRKGAGSVFKSHTHHR-KGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 MG+ + QR+G G+ HR K R+RS D E+ G +KG++T+I+HDP R AP+A V F + +K+ +A E + + CG A + GN LPL IPEG + ++E+ GD G F R SG YA +I+H D + + ++LPSG K + CRA IG Sbjct: 1 MGKRLIIQRRGRGTPAHRVASHRFKDKIRYRSYDALEKEGSIKGIVTDIVHDPARTAPIAEVKFENG-----EKKFILAPESIQIDDEIECGISAPIKFGNTLPLAEIPEGTPIYDIENTPGDGGRFVRSSGTYASLITH--DANQSVVELPSGELKYLNPRCRASIG 161
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3) HSP 1 Score: 115.931 bits (289), Expect = 1.476e-25 Identity = 69/168 (41.07%), Postives = 92/168 (54.76%), Query Frame = 1 Query: 49 MGRVIRAQRKGAG-SVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 MGR I+ QR+G G S F++ +H K + E L G + ++ HDP R AP+ARV F + L +A+EG+ G + G AT+ GN LPL IPEG VCNVE H GD G FAR G A +++H + D T ++LPSG K + CRA IG Sbjct: 1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKRT---EDTDVLAGEVIDVEHDPARSAPVARVAFE-----DDDQRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIG 158 HSP 2 Score: 21.1718 bits (43), Expect = 1.476e-25 Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 2 Query: 569 RTEKPLLKAG 598 RTEKP +KAG Sbjct: 165 RTEKPFVKAG 174
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_HALS3 (50S ribosomal protein L2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.476e-25 Identity = 69/168 (41.07%), Postives = 92/168 (54.76%), Query Frame = 1 Query: 49 MGRVIRAQRKGAG-SVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 MGR I+ QR+G G S F++ +H K + E L G + ++ HDP R AP+ARV F + L +A+EG+ G + G AT+ GN LPL IPEG VCNVE H GD G FAR G A +++H + D T ++LPSG K + CRA IG Sbjct: 1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKRT---EDTDVLAGEVIDVEHDPARSAPVARVAFE-----DDDQRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIG 158 HSP 2 Score: 21.1718 bits (43), Expect = 1.476e-25 Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 2 Query: 569 RTEKPLLKAG 598 RTEKP +KAG Sbjct: 165 RTEKPFVKAG 174
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_PYRIL (50S ribosomal protein L2P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl2p PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.549e-25 Identity = 69/168 (41.07%), Postives = 93/168 (55.36%), Query Frame = 1 Query: 49 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 MG+ I QR+G GS F+S + R GP R+ L+ GY + EI+H+PG AP+AR+ + + L AAEG+Y GQ + G A GN++ L +PEG +V NVE GD G FAR G YAVV+ P+ + T I+LPSG V S RA +G Sbjct: 1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPLNVTVGRGY----VVEILHEPGLNAPVARIRLENGVEF-----LNFAAEGLYVGQEIEVGDLAAPKTGNIVILGRVPEGTMVFNVEKRAGDGGKFARAGGTYAVVVGQKPEENKTIIRLPSGKVVEVDSRGRATVG 159 The following BLAST results are available for this feature:
BLAST of CN181956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181956 ID=CN181956; Name=CN181956; organism=Citrus sinensis; type=EST; length=600bpback to top |