CN181956

Overview
NameCN181956
Unique NameCN181956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5967 contig Csv1_Contig5967:6..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.027e-17
Identity = 57/168 (33.93%), Postives = 83/168 (49.40%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MG  I  Q +G G   +++ +H  K   +     FG     ++  + +I HDP R  P+A V      +   +KE  +  EG+  GQ +  G +AT+V GN LPL +IP G  VCN+E   GD G F R SG  AV+I  +       +++PSG  K     C A +G
Sbjct:    1 MGHRISTQSRGKGGPTYRAPSHQYKAELKH----FGSALETVRATVIDIEHDPARHTPIAVVKIEG--KASDKKEYALITEGVGIGQELVWGPEATVVNGNSLPLSAIPTGVAVCNIEARPGDGGKFVRSSGVQAVIIGKSAGK--VGVRMPSGKPKWFNEACLATVG 160          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_BORRA (50S ribosomal protein L2 OS=Borrelia recurrentis (strain A1) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.648e-17
Identity = 55/175 (31.43%), Postives = 93/175 (53.14%), Query Frame = 1
Query:   37 ESIQMGRVIRAQRKGAG--SVFKSHTHHRKGPARFRSLDFGERNGY-LKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQ 552
            +S+  G+V RA R  +G  SV +    H++   R+R +DF  R+ + +   +  I +DP R   +A + +R        K   +A +G+  G  +  G  A + +GN LPL +IP G +V N+E ++G  G   R +G YA++I+   D D   +KLPSG  +++   C A +G+
Sbjct:   32 KSLTKGKVSRAGRDSSGRISVRRRGGGHKR---RYREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYR-----DGDKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGE 196          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_BORDL (50S ribosomal protein L2 OS=Borrelia duttonii (strain Ly) GN=rplB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.648e-17
Identity = 55/175 (31.43%), Postives = 93/175 (53.14%), Query Frame = 1
Query:   37 ESIQMGRVIRAQRKGAG--SVFKSHTHHRKGPARFRSLDFGERNGY-LKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQ 552
            +S+  G+V RA R  +G  SV +    H++   R+R +DF  R+ + +   +  I +DP R   +A + +R        K   +A +G+  G  +  G  A + +GN LPL +IP G +V N+E ++G  G   R +G YA++I+   D D   +KLPSG  +++   C A +G+
Sbjct:   32 KSLTKGKVSRAGRDSSGRISVRRRGGGHKR---RYREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYR-----DGDKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGE 196          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_SULTO (50S ribosomal protein L2P OS=Sulfolobus tokodaii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.099e-17
Identity = 52/168 (30.95%), Postives = 87/168 (51.79%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MG+ +  QR G G + F+S +  R G A+  +++     G   G + +I+H+PG  APLA +      ++        + +G+  GQ +  G+ A +  GN++ + ++PEG ++ N+E   GD G FAR +G Y VV+      D   +KL S     V S  RA++G
Sbjct:    1 MGKKLLQQRAGRGGINFRSPSWRRVGKAKIPNIE-----GEHIGKVIDIVHNPGTNAPLALIKLDDGTKFY-----VPSVQGLVVGQKIQIGKNAAISNGNIVEVGNVPEGTIISNIEKTRGDGGKFARSAGTYGVVVGKT--GDKVLVKLSSEKIAQVSSNARAIVG 156          

HSP 2 Score: 21.9422 bits (45), Expect = 7.099e-17
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 2
Query:  572 TEKPLLKAG 598
            TEKPLLKAG
Sbjct:  164 TEKPLLKAG 172          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_PICTO (50S ribosomal protein L2P OS=Picrophilus torridus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.704e-17
Identity = 59/168 (35.12%), Postives = 87/168 (51.79%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MG+ I AQR+G GS V++S +H   G  ++       R+G  K  I +II  PGR  P+  +        +++K   +A  G Y  Q ++ G   +  +G+V  L +IP+G+ V N+E   GD G F R +G  A+VISH        +KLPSG  K     CRA +G
Sbjct:    1 MGKHIVAQRRGHGSLVYRSPSHRHLGDIKY------PRDGTYK--IEDIIQAPGRNTPVLLIR-----NEKNEKNYMIAFNGAYVNQEIHVGDIDSPAIGDVTYLANIPDGSYVYNIESIPGDGGKFCRAAGTAALVISHGA---YVSLKLPSGVNKEFHPRCRATVG 152          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_METMJ (50S ribosomal protein L2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.704e-17
Identity = 57/166 (34.34%), Postives = 80/166 (48.19%), Query Frame = 1
Query:   55 RVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFV-AAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            R+I   R   G  +++ +H  K   R      G+ +  + G + +I HDP R AP+A        R    ++++V A EG+  G  V  G   T+  GN LPL  IP GA VCN+E    D G F R SG  A+VI    D+    I++PSG  K     C A +G
Sbjct:    4 RIIAQNRGKGGPTYRAPSHRYKAALRHA----GKNDALVSGNVIDIEHDPARHAPIALA------RLDSGEKIYVLATEGLGVGDTVSWGTGGTVKNGNTLPLGEIPVGAYVCNIEARPNDGGKFVRSSGVQALVIG-KADDGRVGIRMPSGKNKWFNGACMATVG 158          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.314e-16
Identity = 55/168 (32.74%), Postives = 81/168 (48.21%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MG  I  Q +G G   +++ +H  K   +      G+    + G I +I HDP R AP+A V           K   +  EG+  G+ V  G    +  GN LPL+SIP G+ +CN+E    D G F R +G  AVV+  +   D   +++PSG  K   + CRA +G
Sbjct:    1 MGHRITTQNRGRGGPTYRAPSHRYKAALKH----IGDGTKSISGSIIDIEHDPARNAPIALVQLE-----DGSKVYILVTEGIGIGETVAWGADVKVKNGNTLPLQSIPTGSYICNIESRPNDGGKFVRSTGVQAVVV--DKIGDRIGVRMPSGKTKWFNARCRATVG 157          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_DESAP (50S ribosomal protein L2 OS=Desulforudis audaxviator (strain MP104C) GN=rplB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.314e-16
Identity = 55/169 (32.54%), Postives = 85/169 (50.30%), Query Frame = 1
Query:   58 VIRAQRKGAGSVFKSHT--HHRKGPAR--FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQ 552
            ++   RK AG  F+      HR G  +  +R +DF      + G +  I +DP R A +A V +        +K   VA  G+  GQ +  G +A + VGN LPLR+IP G ++ N+E + G      R +G  A +++   + D   ++LPSG  ++ P  CRA IGQ
Sbjct:   33 LVEPLRKKAGRNFQGRVTVRHRGGGHKRLYRVIDFKRNKDGVPGKVATIEYDPNRSANIALVNYA-----DGEKRYIVAPAGLKVGQEIMSGPQADIKVGNALPLRNIPPGVLIHNIELYPGHGARVVRSAGGSAQLMA--KEGDYAHVRLPSGEVRLFPLDCRATIGQ 194          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.242e-16
Identity = 58/170 (34.12%), Postives = 92/170 (54.12%), Query Frame = 1
Query:   49 MGRVIRAQRKG-AGSVFKSHTHHRKGP-ARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAE-GMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MG+    +R+G  G+ F+S +  + G  A +      E++   +G I +++H+ GR APLA+V      R++     FV A  G   G+ +  G K+ +  GNV+ +++IP+G +VCN+E H GD G   + +G  A V SH  +  T  +KLPSG    +    RAMIG
Sbjct:    1 MGKRPLVRRRGRGGNQFRSTSTGKVGTKANYPRFPLSEQH---EGEIIDLVHERGREAPLAKV------RFEDGSVSFVPAVLGAKVGETLQFGLKSKIEKGNVISIQNIPDGTIVCNIEKHFGDGGAIVKSAGTDATVFSHGDEGVT--VKLPSGKFTTLNPKNRAMIG 159          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.927e-16
Identity = 53/168 (31.55%), Postives = 86/168 (51.19%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MG+    +R+G G + F++ T  +   A++ + + GE+    +G + +++H+ GR APLA++ F              A  G   G  +  G K+ +  GNV+ +++IP+G  VCNVE H GD G   + +G  A V SH        +KLPSG    +    RAM+G
Sbjct:    1 MGKRPLVRRRGRGGMQFRAATTGKIARAKYPAFELGEQR---EGTVIDLVHERGRDAPLAKIRFEDGI-----VSYVPAVLGTRVGSSMNFGLKSEIRDGNVISVQNIPDGTTVCNVEKHYGDGGAIVKSAGGNATVFSHGEGG--VVLKLPSGRFSTLNPKNRAMVG 158          
The following BLAST results are available for this feature:
BLAST of CN181956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METLZ2.027e-1733.9350S ribosomal protein L2P OS=Methanocorpusculum la... [more]
RL2_BORRA2.648e-1731.4350S ribosomal protein L2 OS=Borrelia recurrentis (... [more]
RL2_BORDL2.648e-1731.4350S ribosomal protein L2 OS=Borrelia duttonii (str... [more]
RL2_SULTO7.099e-1730.9550S ribosomal protein L2P OS=Sulfolobus tokodaii G... [more]
RL2_PICTO7.704e-1735.1250S ribosomal protein L2P OS=Picrophilus torridus ... [more]
RL2_METMJ7.704e-1734.3450S ribosomal protein L2P OS=Methanoculleus marisn... [more]
RL2_METB61.314e-1632.7450S ribosomal protein L2P OS=Methanoregula boonei ... [more]
RL2_DESAP1.314e-1632.5450S ribosomal protein L2 OS=Desulforudis audaxviat... [more]
RL2_NITMS2.242e-1634.1250S ribosomal protein L2P OS=Nitrosopumilus mariti... [more]
RL2_CENSY2.927e-1631.5550S ribosomal protein L2P OS=Cenarchaeum symbiosum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181956 ID=CN181956; Name=CN181956; organism=Citrus sinensis; type=EST; length=600bp
CAAAAAGCCCCAAAACCCTAGACAGAGAGTCACGGCGAGTCGATTCAAAT
GGGACGAGTCATTAGAGCACAGCGTAAGGGAGCGGGCTCCGTCTTCAAGT
CGCACACACACCACCGCAAGGGCCCGGCCAGGTTCCGCTCGCTTGATTTC
GGGGAACGCAACGGCTACCTGAAGGGAGTCATAACGGAGATCATCCATGA
TCCTGGCCGCGGCGCCCCGCTGGCCCGGGTCACGTTTCGTCACCCGTTTA
GGTACCAGCACCAGAAGGAGCTGTTCGTAGCGGCTGAAGGGATGTACACT
GGGCAGTTCGTGTACTGCGGAAGGAAGGCGACTTTGGTTGTCGGAAATGT
GTTGCCCTTGCGATCGATCCCTGAAGGAGCGGTGGTTTGTAATGTGGAGC
ATCACGTGGGTGATCGCGGTGTCTTTGCCAGATGTTCGGGTGATTATGCT
GTTGTCATTAGTCATAATCCAGATAACGACACTACTCGGATTAAGCTCCC
ATCTGGTGCCAAGAAGATTGTGCCGAGTGGGTGCCGTGCTATGATTGGTC
AAAGTTGCCGGTGGAGGCAGAACAGAGAAGCCATTGTTGAAGGCAGGAAA
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