CN181956
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.027e-17 Identity = 57/168 (33.93%), Postives = 83/168 (49.40%), Query Frame = 1 Query: 49 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 MG I Q +G G +++ +H K + FG ++ + +I HDP R P+A V + +KE + EG+ GQ + G +AT+V GN LPL +IP G VCN+E GD G F R SG AV+I + +++PSG K C A +G Sbjct: 1 MGHRISTQSRGKGGPTYRAPSHQYKAELKH----FGSALETVRATVIDIEHDPARHTPIAVVKIEG--KASDKKEYALITEGVGIGQELVWGPEATVVNGNSLPLSAIPTGVAVCNIEARPGDGGKFVRSSGVQAVIIGKSAGK--VGVRMPSGKPKWFNEACLATVG 160
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_BORRA (50S ribosomal protein L2 OS=Borrelia recurrentis (strain A1) GN=rplB PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.648e-17 Identity = 55/175 (31.43%), Postives = 93/175 (53.14%), Query Frame = 1 Query: 37 ESIQMGRVIRAQRKGAG--SVFKSHTHHRKGPARFRSLDFGERNGY-LKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQ 552 +S+ G+V RA R +G SV + H++ R+R +DF R+ + + + I +DP R +A + +R K +A +G+ G + G A + +GN LPL +IP G +V N+E ++G G R +G YA++I+ D D +KLPSG +++ C A +G+ Sbjct: 32 KSLTKGKVSRAGRDSSGRISVRRRGGGHKR---RYREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYR-----DGDKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGE 196
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_BORDL (50S ribosomal protein L2 OS=Borrelia duttonii (strain Ly) GN=rplB PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.648e-17 Identity = 55/175 (31.43%), Postives = 93/175 (53.14%), Query Frame = 1 Query: 37 ESIQMGRVIRAQRKGAG--SVFKSHTHHRKGPARFRSLDFGERNGY-LKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQ 552 +S+ G+V RA R +G SV + H++ R+R +DF R+ + + + I +DP R +A + +R K +A +G+ G + G A + +GN LPL +IP G +V N+E ++G G R +G YA++I+ D D +KLPSG +++ C A +G+ Sbjct: 32 KSLTKGKVSRAGRDSSGRISVRRRGGGHKR---RYREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYR-----DGDKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGE 196
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_SULTO (50S ribosomal protein L2P OS=Sulfolobus tokodaii GN=rpl2p PE=3 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 7.099e-17 Identity = 52/168 (30.95%), Postives = 87/168 (51.79%), Query Frame = 1 Query: 49 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 MG+ + QR G G + F+S + R G A+ +++ G G + +I+H+PG APLA + ++ + +G+ GQ + G+ A + GN++ + ++PEG ++ N+E GD G FAR +G Y VV+ D +KL S V S RA++G Sbjct: 1 MGKKLLQQRAGRGGINFRSPSWRRVGKAKIPNIE-----GEHIGKVIDIVHNPGTNAPLALIKLDDGTKFY-----VPSVQGLVVGQKIQIGKNAAISNGNIVEVGNVPEGTIISNIEKTRGDGGKFARSAGTYGVVVGKT--GDKVLVKLSSEKIAQVSSNARAIVG 156 HSP 2 Score: 21.9422 bits (45), Expect = 7.099e-17 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 2 Query: 572 TEKPLLKAG 598 TEKPLLKAG Sbjct: 164 TEKPLLKAG 172
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_PICTO (50S ribosomal protein L2P OS=Picrophilus torridus GN=rpl2p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 7.704e-17 Identity = 59/168 (35.12%), Postives = 87/168 (51.79%), Query Frame = 1 Query: 49 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 MG+ I AQR+G GS V++S +H G ++ R+G K I +II PGR P+ + +++K +A G Y Q ++ G + +G+V L +IP+G+ V N+E GD G F R +G A+VISH +KLPSG K CRA +G Sbjct: 1 MGKHIVAQRRGHGSLVYRSPSHRHLGDIKY------PRDGTYK--IEDIIQAPGRNTPVLLIR-----NEKNEKNYMIAFNGAYVNQEIHVGDIDSPAIGDVTYLANIPDGSYVYNIESIPGDGGKFCRAAGTAALVISHGA---YVSLKLPSGVNKEFHPRCRATVG 152
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_METMJ (50S ribosomal protein L2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 7.704e-17 Identity = 57/166 (34.34%), Postives = 80/166 (48.19%), Query Frame = 1 Query: 55 RVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFV-AAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 R+I R G +++ +H K R G+ + + G + +I HDP R AP+A R ++++V A EG+ G V G T+ GN LPL IP GA VCN+E D G F R SG A+VI D+ I++PSG K C A +G Sbjct: 4 RIIAQNRGKGGPTYRAPSHRYKAALRHA----GKNDALVSGNVIDIEHDPARHAPIALA------RLDSGEKIYVLATEGLGVGDTVSWGTGGTVKNGNTLPLGEIPVGAYVCNIEARPNDGGKFVRSSGVQALVIG-KADDGRVGIRMPSGKNKWFNGACMATVG 158
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.314e-16 Identity = 55/168 (32.74%), Postives = 81/168 (48.21%), Query Frame = 1 Query: 49 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 MG I Q +G G +++ +H K + G+ + G I +I HDP R AP+A V K + EG+ G+ V G + GN LPL+SIP G+ +CN+E D G F R +G AVV+ + D +++PSG K + CRA +G Sbjct: 1 MGHRITTQNRGRGGPTYRAPSHRYKAALKH----IGDGTKSISGSIIDIEHDPARNAPIALVQLE-----DGSKVYILVTEGIGIGETVAWGADVKVKNGNTLPLQSIPTGSYICNIESRPNDGGKFVRSTGVQAVVV--DKIGDRIGVRMPSGKTKWFNARCRATVG 157
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_DESAP (50S ribosomal protein L2 OS=Desulforudis audaxviator (strain MP104C) GN=rplB PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.314e-16 Identity = 55/169 (32.54%), Postives = 85/169 (50.30%), Query Frame = 1 Query: 58 VIRAQRKGAGSVFKSHT--HHRKGPAR--FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQ 552 ++ RK AG F+ HR G + +R +DF + G + I +DP R A +A V + +K VA G+ GQ + G +A + VGN LPLR+IP G ++ N+E + G R +G A +++ + D ++LPSG ++ P CRA IGQ Sbjct: 33 LVEPLRKKAGRNFQGRVTVRHRGGGHKRLYRVIDFKRNKDGVPGKVATIEYDPNRSANIALVNYA-----DGEKRYIVAPAGLKVGQEIMSGPQADIKVGNALPLRNIPPGVLIHNIELYPGHGARVVRSAGGSAQLMA--KEGDYAHVRLPSGEVRLFPLDCRATIGQ 194
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.242e-16 Identity = 58/170 (34.12%), Postives = 92/170 (54.12%), Query Frame = 1 Query: 49 MGRVIRAQRKG-AGSVFKSHTHHRKGP-ARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAE-GMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 MG+ +R+G G+ F+S + + G A + E++ +G I +++H+ GR APLA+V R++ FV A G G+ + G K+ + GNV+ +++IP+G +VCN+E H GD G + +G A V SH + T +KLPSG + RAMIG Sbjct: 1 MGKRPLVRRRGRGGNQFRSTSTGKVGTKANYPRFPLSEQH---EGEIIDLVHERGREAPLAKV------RFEDGSVSFVPAVLGAKVGETLQFGLKSKIEKGNVISIQNIPDGTIVCNIEKHFGDGGAIVKSAGTDATVFSHGDEGVT--VKLPSGKFTTLNPKNRAMIG 159
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.927e-16 Identity = 53/168 (31.55%), Postives = 86/168 (51.19%), Query Frame = 1 Query: 49 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549 MG+ +R+G G + F++ T + A++ + + GE+ +G + +++H+ GR APLA++ F A G G + G K+ + GNV+ +++IP+G VCNVE H GD G + +G A V SH +KLPSG + RAM+G Sbjct: 1 MGKRPLVRRRGRGGMQFRAATTGKIARAKYPAFELGEQR---EGTVIDLVHERGRDAPLAKIRFEDGI-----VSYVPAVLGTRVGSSMNFGLKSEIRDGNVISVQNIPDGTTVCNVEKHYGDGGAIVKSAGGNATVFSHGEGG--VVLKLPSGRFSTLNPKNRAMVG 158 The following BLAST results are available for this feature:
BLAST of CN181956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181956 ID=CN181956; Name=CN181956; organism=Citrus sinensis; type=EST; length=600bpback to top |