CN181955 | Citrus Genome Database

Overview


Name	CN181955
Unique Name	CN181955
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	625

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_ECOSM (S-adenosylmethionine synthetase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=metK PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.464e-46
Identity = 97/161 (60.25%), Postives = 112/161 (69.57%), Query Frame = 2

Query:   92 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            M   LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MV+V GEITT A VD E+I R+T R IG+V  D+G DA+ C VL  I +QSPDI QGV       P + GAGDQG MFGYAT+ET   MP     A +L  R  EVRKN  L
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTL 158

HSP 2 Score: 29.261 bits (64), Expect = 2.464e-46
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 3

Query:  570 TCSWLRPDGKTQVTVEY 620
            T  WLRPD K+QVT +Y
Sbjct:  157 TLPWLRPDAKSQVTFQY 173

BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_ECOSE (S-adenosylmethionine synthetase OS=Escherichia coli (strain SE11) GN=metK PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.464e-46
Identity = 97/161 (60.25%), Postives = 112/161 (69.57%), Query Frame = 2

Query:   92 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            M   LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MV+V GEITT A VD E+I R+T R IG+V  D+G DA+ C VL  I +QSPDI QGV       P + GAGDQG MFGYAT+ET   MP     A +L  R  EVRKN  L
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTL 158

HSP 2 Score: 29.261 bits (64), Expect = 2.464e-46
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 3

Query:  570 TCSWLRPDGKTQVTVEY 620
            T  WLRPD K+QVT +Y
Sbjct:  157 TLPWLRPDAKSQVTFQY 173

BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_ECOLU (S-adenosylmethionine synthetase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=metK PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.464e-46
Identity = 97/161 (60.25%), Postives = 112/161 (69.57%), Query Frame = 2

Query:   92 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            M   LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MV+V GEITT A VD E+I R+T R IG+V  D+G DA+ C VL  I +QSPDI QGV       P + GAGDQG MFGYAT+ET   MP     A +L  R  EVRKN  L
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTL 158

HSP 2 Score: 29.261 bits (64), Expect = 2.464e-46
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 3

Query:  570 TCSWLRPDGKTQVTVEY 620
            T  WLRPD K+QVT +Y
Sbjct:  157 TLPWLRPDAKSQVTFQY 173

BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_ECOLI (S-adenosylmethionine synthetase OS=Escherichia coli (strain K12) GN=metK PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 2.464e-46
Identity = 97/161 (60.25%), Postives = 112/161 (69.57%), Query Frame = 2

Query:   92 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            M   LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MV+V GEITT A VD E+I R+T R IG+V  D+G DA+ C VL  I +QSPDI QGV       P + GAGDQG MFGYAT+ET   MP     A +L  R  EVRKN  L
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTL 158

HSP 2 Score: 29.261 bits (64), Expect = 2.464e-46
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 3

Query:  570 TCSWLRPDGKTQVTVEY 620
            T  WLRPD K+QVT +Y
Sbjct:  157 TLPWLRPDAKSQVTFQY 173

BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_ECOLC (S-adenosylmethionine synthetase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=metK PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.464e-46
Identity = 97/161 (60.25%), Postives = 112/161 (69.57%), Query Frame = 2

Query:   92 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            M   LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MV+V GEITT A VD E+I R+T R IG+V  D+G DA+ C VL  I +QSPDI QGV       P + GAGDQG MFGYAT+ET   MP     A +L  R  EVRKN  L
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTL 158

HSP 2 Score: 29.261 bits (64), Expect = 2.464e-46
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 3

Query:  570 TCSWLRPDGKTQVTVEY 620
            T  WLRPD K+QVT +Y
Sbjct:  157 TLPWLRPDAKSQVTFQY 173

BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_ECOL6 (S-adenosylmethionine synthetase OS=Escherichia coli O6 GN=metK PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 2.464e-46
Identity = 97/161 (60.25%), Postives = 112/161 (69.57%), Query Frame = 2

Query:   92 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            M   LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MV+V GEITT A VD E+I R+T R IG+V  D+G DA+ C VL  I +QSPDI QGV       P + GAGDQG MFGYAT+ET   MP     A +L  R  EVRKN  L
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTL 158

HSP 2 Score: 29.261 bits (64), Expect = 2.464e-46
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 3

Query:  570 TCSWLRPDGKTQVTVEY 620
            T  WLRPD K+QVT +Y
Sbjct:  157 TLPWLRPDAKSQVTFQY 173

BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_ECOL5 (S-adenosylmethionine synthetase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=metK PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.464e-46
Identity = 97/161 (60.25%), Postives = 112/161 (69.57%), Query Frame = 2

Query:   92 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            M   LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MV+V GEITT A VD E+I R+T R IG+V  D+G DA+ C VL  I +QSPDI QGV       P + GAGDQG MFGYAT+ET   MP     A +L  R  EVRKN  L
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTL 158

HSP 2 Score: 29.261 bits (64), Expect = 2.464e-46
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 3

Query:  570 TCSWLRPDGKTQVTVEY 620
            T  WLRPD K+QVT +Y
Sbjct:  157 TLPWLRPDAKSQVTFQY 173

BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_ECOHS (S-adenosylmethionine synthetase OS=Escherichia coli O9:H4 (strain HS) GN=metK PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.464e-46
Identity = 97/161 (60.25%), Postives = 112/161 (69.57%), Query Frame = 2

Query:   92 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            M   LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MV+V GEITT A VD E+I R+T R IG+V  D+G DA+ C VL  I +QSPDI QGV       P + GAGDQG MFGYAT+ET   MP     A +L  R  EVRKN  L
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTL 158

HSP 2 Score: 29.261 bits (64), Expect = 2.464e-46
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 3

Query:  570 TCSWLRPDGKTQVTVEY 620
            T  WLRPD K+QVT +Y
Sbjct:  157 TLPWLRPDAKSQVTFQY 173

BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_ECODH (S-adenosylmethionine synthetase OS=Escherichia coli (strain K12 / DH10B) GN=metK PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.464e-46
Identity = 97/161 (60.25%), Postives = 112/161 (69.57%), Query Frame = 2

Query:   92 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            M   LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MV+V GEITT A VD E+I R+T R IG+V  D+G DA+ C VL  I +QSPDI QGV       P + GAGDQG MFGYAT+ET   MP     A +L  R  EVRKN  L
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTL 158

HSP 2 Score: 29.261 bits (64), Expect = 2.464e-46
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 3

Query:  570 TCSWLRPDGKTQVTVEY 620
            T  WLRPD K+QVT +Y
Sbjct:  157 TLPWLRPDAKSQVTFQY 173

BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_ECOBW (S-adenosylmethionine synthetase OS=Escherichia coli (strain K12 / BW2952) GN=metK PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.464e-46
Identity = 97/161 (60.25%), Postives = 112/161 (69.57%), Query Frame = 2

Query:   92 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            M   LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MV+V GEITT A VD E+I R+T R IG+V  D+G DA+ C VL  I +QSPDI QGV       P + GAGDQG MFGYAT+ET   MP     A +L  R  EVRKN  L
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTL 158

HSP 2 Score: 29.261 bits (64), Expect = 2.464e-46
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 3

Query:  570 TCSWLRPDGKTQVTVEY 620
            T  WLRPD K+QVT +Y
Sbjct:  157 TLPWLRPDAKSQVTFQY 173

The following BLAST results are available for this feature:

BLAST of CN181955 vs. ExPASy Swiss-Prot

BLAST of CN181955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
METK_ECOSM	2.464e-46	60.25	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECOSE	2.464e-46	60.25	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECOLU	2.464e-46	60.25	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECOLI	2.464e-46	60.25	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECOLC	2.464e-46	60.25	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECOL6	2.464e-46	60.25	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECOL5	2.464e-46	60.25	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECOHS	2.464e-46	60.25	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECODH	2.464e-46	60.25	S-adenosylmethionine synthetase OS=Escherichia col...	[more]
METK_ECOBW	2.464e-46	60.25	S-adenosylmethionine synthetase OS=Escherichia col...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS04_0001L15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L15, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN181955 ID=CN181955; Name=CN181955; organism=Citrus sinensis; type=EST; length=625bp
GAGGATTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTAAGTCTGAATCT
TAGATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGATGGAGACC
TTTCTATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGACAAGTTGTG
CGACCAGATCTCTGATGCGGTGCTTGACGCCTGCCTTGAGCAGGATCCTG
AGAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTC
TTTGGAGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAGATTGTTCG
CGACACTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGGTCTTGACG
CCGATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCCCGGATATT
GCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGACATTGGTGC
TGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGAGACCTCTGAAT
TTATGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTCGTCTCACG
GAGGTTAGGAAGAATAGTAACCTGCTCTTGGCTAAGGCCCGATGGGAAGA
CCCAGGTCACTGTTGAGTACTACAA