CN181955

Overview
NameCN181955
Unique NameCN181955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_MYCS2 (S-adenosylmethionine synthetase OS=Mycobacterium smegmatis GN=metK PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.187e-39
Identity = 96/164 (58.54%), Postives = 106/164 (64.63%), Query Frame = 2
Query:  104 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVH-GHFTK-----RPEDI-GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            LFTSESV EGHPDK+CD ISD+VLDA LEQDP+S+VA ET   T  V V GE+TT A  D  KIVRD    IG+ S   G D   C V V I  QSPDIAQGV   H T+      P D+ GAGDQG MFGYA  +T E MPL   LA +L  RLTEVRKN  L
Sbjct:    6 LFTSESVTEGHPDKICDAISDSVLDALLEQDPKSRVAVETLVTTGQVHVAGEVTTTAYADIPKIVRDRILDIGYDSSTKGFDGASCGVNVAIGAQSPDIAQGVDTAHETRVEGKADPLDLQGAGDQGLMFGYAIGDTPELMPLPIALAHRLARRLTEVRKNGVL 169          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_DESRM (S-adenosylmethionine synthetase OS=Desulfotomaculum reducens (strain MI-1) GN=metK PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.187e-39
Identity = 90/165 (54.55%), Postives = 108/165 (65.45%), Query Frame = 2
Query:   92 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVH-------GHFTKRP-EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRK 562
            M   LFTSESV EGHPDK+ DQISDA+LD+ L +DP ++VACET   T +V+V GEI+ +  VD  K+VR+T   IG+     G D D C VL  I++QSPDIA GV        G  T+   E IGAGDQG MFGYATDET E MPL   LA  +  RL+EVRK
Sbjct:    1 MSRKLFTSESVTEGHPDKVADQISDAILDSILAKDPMARVACETFVTTGLVLVGGEISCQCYVDIPKVVRETILEIGYTRAKYGFDGDTCAVLTAIDEQSPDIAMGVDKALEAKTGETTEAEIEAIGAGDQGMMFGYATDETPELMPLPISLAHTMARRLSEVRK 165          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_DEHSC (S-adenosylmethionine synthetase OS=Dehalococcoides sp. (strain CBDB1) GN=metK PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.187e-39
Identity = 85/164 (51.83%), Postives = 106/164 (64.63%), Query Frame = 2
Query:  101 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI------GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            +LFTSESV EGHPDK+CDQISDAVLDA + +DP + VACET     +V+V GEITT   V+  ++VR   + IG++  + G D   C VL +I +QSPDIA GV+     +   +      GAGDQG MFGYA  ET E+MPL   LA +L  RL EVRKN  L
Sbjct:   11 YLFTSESVTEGHPDKICDQISDAVLDAIIAKDPTAHVACETAVTNGLVVVMGEITTSCYVEIPELVRGVIKDIGYIKPEYGFDDRTCGVLTSINRQSPDIALGVNKSQEAKSGQVDELDLTGAGDQGMMFGYACTETPEYMPLPISLAHRLSKRLAEVRKNGTL 174          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_DEHSB (S-adenosylmethionine synthetase OS=Dehalococcoides sp. (strain BAV1) GN=metK PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.187e-39
Identity = 85/164 (51.83%), Postives = 106/164 (64.63%), Query Frame = 2
Query:  101 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI------GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            +LFTSESV EGHPDK+CDQISDAVLDA + +DP + VACET     +V+V GEITT   V+  ++VR   + IG++  + G D   C VL +I +QSPDIA GV+     +   +      GAGDQG MFGYA  ET E+MPL   LA +L  RL EVRKN  L
Sbjct:   11 YLFTSESVTEGHPDKICDQISDAVLDAIIAKDPTAHVACETAVTNGLVVVMGEITTSCYVEIPELVRGVIKDIGYIKPEYGFDDRTCGVLTSINRQSPDIALGVNKSQEAKSGQVDELDLTGAGDQGMMFGYACTETPEYMPLPISLAHRLSKRLAEVRKNGTL 174          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_MYXXD (S-adenosylmethionine synthetase OS=Myxococcus xanthus (strain DK 1622) GN=metK PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.495e-39
Identity = 80/157 (50.96%), Postives = 101/157 (64.33%), Query Frame = 2
Query:  101 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSN 571
            FLFTSESV EGHPDK+ DQISD VLDA + +DP+++VA ET  KT + +V GE+TT   VD  K+VR T   IG+    +G D + C V+V IE QS DIA+GV        +D GAGDQG MFG+A DET E MP     A  +  RL +VR+  +
Sbjct:    5 FLFTSESVTEGHPDKIADQISDGVLDAIIAKDPQARVAVETLVKTGLAIVAGEVTTNCYVDIPKLVRSTICRIGYTDSSMGYDGNTCGVMVAIEGQSQDIARGV-----DNKKDQGAGDQGMMFGFACDETPELMPAPIHYAHAITRRLADVRRKQH 156          

HSP 2 Score: 32.7278 bits (73), Expect = 1.495e-39
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  579 WLRPDGKTQVTVEY 620
            W+RPDGK+QVTVEY
Sbjct:  158 WIRPDGKSQVTVEY 171          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_MYXXA (S-adenosylmethionine synthetase OS=Myxococcus xanthus GN=metK PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.495e-39
Identity = 80/157 (50.96%), Postives = 101/157 (64.33%), Query Frame = 2
Query:  101 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSN 571
            FLFTSESV EGHPDK+ DQISD VLDA + +DP+++VA ET  KT + +V GE+TT   VD  K+VR T   IG+    +G D + C V+V IE QS DIA+GV        +D GAGDQG MFG+A DET E MP     A  +  RL +VR+  +
Sbjct:    5 FLFTSESVTEGHPDKIADQISDGVLDAIIAKDPQARVAVETLVKTGLAIVAGEVTTNCYVDIPKLVRSTICRIGYTDSSMGYDGNTCGVMVAIEGQSQDIARGV-----DNKKDQGAGDQGMMFGFACDETPELMPAPIHYAHAITRRLADVRRKQH 156          

HSP 2 Score: 32.7278 bits (73), Expect = 1.495e-39
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  579 WLRPDGKTQVTVEY 620
            W+RPDGK+QVTVEY
Sbjct:  158 WIRPDGKSQVTVEY 171          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_METCA (S-adenosylmethionine synthetase OS=Methylococcus capsulatus GN=metK PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.495e-39
Identity = 85/159 (53.46%), Postives = 107/159 (67.30%), Query Frame = 2
Query:   98 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            +F+FTSESV+EGHPDK+ DQ+SDAVLDA L QDP+++VA ET  KT MV++ GE+TT A VD E++VR     IG+ + ++G D   C VL  I +QSPDIA GV   F    +  GAGDQG MFGYAT+ET   MP     A +L  R  EVRK+  L
Sbjct:    4 SFIFTSESVSEGHPDKIADQVSDAVLDAILAQDPKARVAVETLVKTGMVVLAGEVTTSAWVDTEELVRKVVHEIGYDNPEIGFDWQSCAVLTAIGKQSPDIAMGV-DEFDDHEQ--GAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKHKVL 159          

HSP 2 Score: 27.335 bits (59), Expect = 1.495e-39
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  579 WLRPDGKTQVTVEY 620
            WLRPD K+QVT  Y
Sbjct:  161 WLRPDAKSQVTFRY 174          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_ROSCS (S-adenosylmethionine synthetase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=metK PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.550e-39
Identity = 87/172 (50.58%), Postives = 110/172 (63.95%), Query Frame = 2
Query:   89 KMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEIT-TKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPE---------DIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            K     FTSESV EGHPDK+CDQ+SDAVLDA L  DP ++VACET T T +++V GE+T  +  +  E+IVR T + IG+     G DAD C V+V I  QSPDIAQGV+     R +          IGAGDQG MFG+A +ET E MPL   LA ++G RL+ +RK+  L
Sbjct:    7 KSPRLFFTSESVTEGHPDKICDQVSDAVLDAFLSHDPRARVACETATTTGLIVVIGEVTYEQGYIPIEEIVRKTIKDIGYTDAAYGFDADTCGVMVAIHGQSPDIAQGVNRALEVRSDGQVTEEEVATIGAGDQGMMFGFACNETPELMPLPIALAHRIGRRLSRLRKDGVL 178          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_DEHE1 (S-adenosylmethionine synthetase OS=Dehalococcoides ethenogenes (strain 195) GN=metK PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.550e-39
Identity = 85/164 (51.83%), Postives = 106/164 (64.63%), Query Frame = 2
Query:  101 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI------GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            +LFTSESV EGHPDK+CDQISDAVLDA + +DP + VACET     +V+V GEITT   V+  ++VR   + IG+   + G D   C VL +I +QSPDIA GV+     +   +      GAGDQG MFGYA  ET E+MPL   LA +L  RL+EVRKN  L
Sbjct:   11 YLFTSESVTEGHPDKICDQISDAVLDAIIAKDPNAHVACETAVTNGLVVVMGEITTSCYVEIPELVRGVIKDIGYTKPEYGFDDRTCGVLTSINRQSPDIALGVNKSQEAKSGQVDELDLTGAGDQGMMFGYACTETPEYMPLPISLAHRLSKRLSEVRKNGTL 174          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_METPP (S-adenosylmethionine synthetase OS=Methylibium petroleiphilum (strain PM1) GN=metK PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.948e-39
Identity = 85/158 (53.80%), Postives = 107/158 (67.72%), Query Frame = 2
Query:  101 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            FLFTSESV+EGHPDK+ DQISDA+LDA   QDP S+VA ET T T +V++ GEITT A VDY ++ RDT + IG+ + + G+D   C VLV  ++QS DIAQGV    +    + GAGDQG MFGYA DET E MP     A +L  R  ++RK+  L
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFAQDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTEYGIDYKGCAVLVAYDKQSNDIAQGV-DQASDDHLNTGAGDQGLMFGYACDETPELMPAPIYYAHRLVERQAQLRKDGRL 161          

HSP 2 Score: 24.6386 bits (52), Expect = 1.948e-39
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 3
Query:  549 RRLGRIVTCSWLRPDGKTQVTVEY 620
            R+ GR+    +LRPD K+QVT+ Y
Sbjct:  156 RKDGRL---PFLRPDAKSQVTMRY 176          
The following BLAST results are available for this feature:
BLAST of CN181955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_MYCS21.187e-3958.54S-adenosylmethionine synthetase OS=Mycobacterium s... [more]
METK_DESRM1.187e-3954.55S-adenosylmethionine synthetase OS=Desulfotomaculu... [more]
METK_DEHSC1.187e-3951.83S-adenosylmethionine synthetase OS=Dehalococcoides... [more]
METK_DEHSB1.187e-3951.83S-adenosylmethionine synthetase OS=Dehalococcoides... [more]
METK_MYXXD1.495e-3950.96S-adenosylmethionine synthetase OS=Myxococcus xant... [more]
METK_MYXXA1.495e-3950.96S-adenosylmethionine synthetase OS=Myxococcus xant... [more]
METK_METCA1.495e-3953.46S-adenosylmethionine synthetase OS=Methylococcus c... [more]
METK_ROSCS1.550e-3950.58S-adenosylmethionine synthetase OS=Roseiflexus cas... [more]
METK_DEHE11.550e-3951.83S-adenosylmethionine synthetase OS=Dehalococcoides... [more]
METK_METPP1.948e-3953.80S-adenosylmethionine synthetase OS=Methylibium pet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181955 ID=CN181955; Name=CN181955; organism=Citrus sinensis; type=EST; length=625bp
GAGGATTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTAAGTCTGAATCT
TAGATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGATGGAGACC
TTTCTATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGACAAGTTGTG
CGACCAGATCTCTGATGCGGTGCTTGACGCCTGCCTTGAGCAGGATCCTG
AGAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTC
TTTGGAGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAGATTGTTCG
CGACACTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGGTCTTGACG
CCGATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCCCGGATATT
GCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGACATTGGTGC
TGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGAGACCTCTGAAT
TTATGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTCGTCTCACG
GAGGTTAGGAAGAATAGTAACCTGCTCTTGGCTAAGGCCCGATGGGAAGA
CCCAGGTCACTGTTGAGTACTACAA
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