CN181955

Overview
NameCN181955
Unique NameCN181955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_SCHPO (S-adenosylmethionine synthetase OS=Schizosaccharomyces pombe GN=sam1 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.444e-53
Identity = 101/160 (63.12%), Postives = 129/160 (80.62%), Query Frame = 2
Query:   95 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            +TFLFTSESV EGHPDK+CDQISDA+LDACL+ DP SKVACET +KT MVMVFGEITT++++DY+K++R+T +SIG+   + G D   C VLV IEQQSPDIAQG+  H+ K  E++GAGDQG MFGYATDET E +PL+ +LA KL A ++  R++ +L
Sbjct:    3 QTFLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGL--HYEKALEELGAGDQGIMFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSL 160          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK1_CAEEL (Probable S-adenosylmethionine synthetase 1 OS=Caenorhabditis elegans GN=sams-1 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.062e-53
Identity = 100/158 (63.29%), Postives = 119/158 (75.32%), Query Frame = 2
Query:  101 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            FLFTSESV+EGHPDK+CDQISDAVLDA L+QDP +KVACET TKT MVM+ GEIT+KA VDY+ +VR     IGF    +G D   C VLV +EQQSP+IA GV  H  K  ED+GAGDQG MFGYATDET E MPL+ +L+ K+ A L ++R+N  L
Sbjct:    5 FLFTSESVSEGHPDKMCDQISDAVLDAHLKQDPNAKVACETVTKTGMVMLCGEITSKAVVDYQVLVRRVIEKIGFTDSSIGFDHKTCNVLVALEQQSPEIAAGV--HVNKDGEDVGAGDQGIMFGYATDETEETMPLTLILSHKINAELHKLRRNGTL 160          

HSP 2 Score: 31.9574 bits (71), Expect = 3.062e-53
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  552 RLGRIVTCSWLRPDGKTQVTVEY 620
            +L R  T  W+RPD K+QVT+EY
Sbjct:  153 KLRRNGTLPWVRPDSKSQVTIEY 175          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK1_RAT (S-adenosylmethionine synthetase isoform type-1 OS=Rattus norvegicus GN=Mat1a PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 8.844e-53
Identity = 99/168 (58.93%), Postives = 122/168 (72.62%), Query Frame = 2
Query:   71 CQPQLDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            C   L +   F+FTSESV EGHPDK+CDQISDAVLDA L+QDP +KVACET  KT MV++ GEIT+ A +DY+++VRDT + IG+     G D   C VLV +EQQSPDIAQ V  H  +  ED+GAGDQG MFGYATDET E MPL+ VLA KL  R+ ++R++  L
Sbjct:    9 CDHSLSEEGAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMIDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCV--HLDRNEEDVGAGDQGLMFGYATDETEECMPLTIVLAHKLNTRMADLRRSGVL 174          

HSP 2 Score: 31.5722 bits (70), Expect = 8.844e-53
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 3
Query:  579 WLRPDGKTQVTVEY 620
            WLRPD KTQVTV+Y
Sbjct:  176 WLRPDSKTQVTVQY 189          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK1_MOUSE (S-adenosylmethionine synthetase isoform type-1 OS=Mus musculus GN=Mat1a PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.845e-53
Identity = 100/168 (59.52%), Postives = 122/168 (72.62%), Query Frame = 2
Query:   71 CQPQLDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            C   L +   F+FTSESV EGHPDK+CDQISDAVLDA L+QDP +KVACET  KT MV++ GEIT+ A VDY+++VRDT + IG+     G D   C VLV +EQQSPDIAQ V  H  +  ED+GAGDQG MFGYATDET E MPL+ VLA KL  R+ ++R++  L
Sbjct:    9 CDHSLSEEGAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSVAMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCV--HLDRNEEDVGAGDQGLMFGYATDETEECMPLTIVLAHKLNTRIADLRRSGVL 174          

HSP 2 Score: 31.5722 bits (70), Expect = 8.845e-53
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 3
Query:  579 WLRPDGKTQVTVEY 620
            WLRPD KTQVTV+Y
Sbjct:  176 WLRPDSKTQVTVQY 189          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK1_BOVIN (S-adenosylmethionine synthetase isoform type-1 OS=Bos taurus GN=MAT1A PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.503e-52
Identity = 99/168 (58.93%), Postives = 123/168 (73.21%), Query Frame = 2
Query:   71 CQPQLDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            C   L +   F+FTSESV EGHPDK+CDQISDAVLDA L+QDP +KVACET  KT MV++ GEIT+ A VDY+++VR+T + IG+     G D   C VLV +EQQSPDIAQ V  H  +  ED+GAGDQG MFGYATDET E MPL+ +LA +L AR+ E+R++  L
Sbjct:    9 CDHSLSEEGAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMVDYQRVVRETIQHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCV--HLDRNEEDVGAGDQGLMFGYATDETEECMPLTIMLAHRLNARMAELRRSGQL 174          

HSP 2 Score: 30.8018 bits (68), Expect = 1.503e-52
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 3
Query:  549 RRLGRIVTCSWLRPDGKTQVTVEY 620
            RR G++    WL+PD KTQVTV+Y
Sbjct:  169 RRSGQL---PWLQPDSKTQVTVQY 189          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK1_HUMAN (S-adenosylmethionine synthetase isoform type-1 OS=Homo sapiens GN=MAT1A PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.554e-52
Identity = 98/158 (62.03%), Postives = 120/158 (75.95%), Query Frame = 2
Query:  101 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            F+FTSESV EGHPDK+CDQISDAVLDA L+QDP +KVACET  KT MV++ GEIT+ A VDY+++VRDT + IG+     G D   C VLV +EQQSPDIAQ V  H  +  ED+GAGDQG MFGYATDET E MPL+ +LA KL AR+ ++R++  L
Sbjct:   18 FMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCV--HLDRNEEDVGAGDQGLMFGYATDETEECMPLTIILAHKLNARMADLRRSGLL 173          

HSP 2 Score: 31.5722 bits (70), Expect = 2.554e-52
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 3
Query:  579 WLRPDGKTQVTVEY 620
            WLRPD KTQVTV+Y
Sbjct:  175 WLRPDSKTQVTVQY 188          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_LEIIN (S-adenosylmethionine synthetase OS=Leishmania infantum GN=METK PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 2.723e-52
Identity = 105/165 (63.64%), Postives = 127/165 (76.97%), Query Frame = 2
Query:   92 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNLLLAK 586
            + + LF+SE V EGHPDKLCDQ+SDAVLDACL  DP SKVACE+C KT MVMVFGEITTKA +DY+KIVR+T + IGF S D GLD + C VLV IEQQSPDI QG+ G+F    ED+GAGDQG MFGYATDET   MPL++ LA  L  + +E+R++ +L  A+
Sbjct:    3 VHSILFSSEHVTEGHPDKLCDQVSDAVLDACLAGDPFSKVACESCAKTGMVMVFGEITTKAVLDYQKIVRNTIKDIGFDSADKGLDYESCNVLVAIEQQSPDICQGL-GNFDS--EDLGAGDQGMMFGYATDETETLMPLTYELARGLAKKYSELRRSGSLEWAR 164          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK4_CAEEL (Probable S-adenosylmethionine synthetase 4 OS=Caenorhabditis elegans GN=sams-4 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.128e-51
Identity = 97/158 (61.39%), Postives = 119/158 (75.32%), Query Frame = 2
Query:  101 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            FLFTSESV+EGHPDK+CDQISDAVLDA L QDP +KVACET TKT M+M+ GEIT+KA VDY+ +VR+  + IG+     G D   C VLV +EQQSP+IA GV  H  K  +D+GAGDQG MFGYATDET E MPL+ +L+ KL  +L E+R++  L
Sbjct:    6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVVDYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGV--HVDKDSDDVGAGDQGIMFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGEL 161          

HSP 2 Score: 31.9574 bits (71), Expect = 2.128e-51
Identity = 14/24 (58.33%), Postives = 17/24 (70.83%), Query Frame = 3
Query:  549 RRLGRIVTCSWLRPDGKTQVTVEY 620
            RR G +    W+RPD KTQVT+EY
Sbjct:  156 RRSGEL---EWVRPDSKTQVTIEY 176          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK3_CAEEL (Probable S-adenosylmethionine synthetase 3 OS=Caenorhabditis elegans GN=sams-3 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.128e-51
Identity = 97/158 (61.39%), Postives = 119/158 (75.32%), Query Frame = 2
Query:  101 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            FLFTSESV+EGHPDK+CDQISDAVLDA L QDP +KVACET TKT M+M+ GEIT+KA VDY+ +VR+  + IG+     G D   C VLV +EQQSP+IA GV  H  K  +D+GAGDQG MFGYATDET E MPL+ +L+ KL  +L E+R++  L
Sbjct:    6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVVDYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGV--HVDKDSDDVGAGDQGIMFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGEL 161          

HSP 2 Score: 31.9574 bits (71), Expect = 2.128e-51
Identity = 14/24 (58.33%), Postives = 17/24 (70.83%), Query Frame = 3
Query:  549 RRLGRIVTCSWLRPDGKTQVTVEY 620
            RR G +    W+RPD KTQVT+EY
Sbjct:  156 RRSGEL---EWVRPDSKTQVTIEY 176          
BLAST of CN181955 vs. ExPASy Swiss-Prot
Match: METK_ASCIM (S-adenosylmethionine synthetase OS=Ascobolus immersus PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.011e-51
Identity = 99/159 (62.26%), Postives = 123/159 (77.36%), Query Frame = 2
Query:   98 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSNL 574
            +FLFTSESV EGHPDK+ DQ+SDAVLDACL +DP SKVACET TKT M+MVFGEITTKA +DY+KI+R+  + IG+     G D   C VLV IEQQSPDIAQG+  H+ K  E++GAGDQG MFGYATDET E +PL+ +LA +L A + + R++ +L
Sbjct:   13 SFLFTSESVGEGHPDKIADQVSDAVLDACLAEDPLSKVACETATKTGMIMVFGEITTKAHLDYQKIIRNAVKDIGYDDSAKGFDYKTCNVLVAIEQQSPDIAQGL--HYEKALEELGAGDQGIMFGYATDETPELLPLTLLLAHQLNANMAKARRDGSL 169          
The following BLAST results are available for this feature:
BLAST of CN181955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SCHPO1.444e-5363.13S-adenosylmethionine synthetase OS=Schizosaccharom... [more]
METK1_CAEEL3.062e-5363.29Probable S-adenosylmethionine synthetase 1 OS=Caen... [more]
METK1_RAT8.844e-5358.93S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK1_MOUSE8.845e-5359.52S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK1_BOVIN1.503e-5258.93S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK1_HUMAN2.554e-5262.03S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK_LEIIN2.723e-5263.64S-adenosylmethionine synthetase OS=Leishmania infa... [more]
METK4_CAEEL2.128e-5161.39Probable S-adenosylmethionine synthetase 4 OS=Caen... [more]
METK3_CAEEL2.128e-5161.39Probable S-adenosylmethionine synthetase 3 OS=Caen... [more]
METK_ASCIM3.011e-5162.26S-adenosylmethionine synthetase OS=Ascobolus immer... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181955 ID=CN181955; Name=CN181955; organism=Citrus sinensis; type=EST; length=625bp
GAGGATTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTAAGTCTGAATCT
TAGATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGATGGAGACC
TTTCTATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGACAAGTTGTG
CGACCAGATCTCTGATGCGGTGCTTGACGCCTGCCTTGAGCAGGATCCTG
AGAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTC
TTTGGAGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAGATTGTTCG
CGACACTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGGTCTTGACG
CCGATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCCCGGATATT
GCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGACATTGGTGC
TGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGAGACCTCTGAAT
TTATGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTCGTCTCACG
GAGGTTAGGAAGAATAGTAACCTGCTCTTGGCTAAGGCCCGATGGGAAGA
CCCAGGTCACTGTTGAGTACTACAA
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