CN181954

Overview
NameCN181954
Unique NameCN181954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:964..1715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181954 vs. ExPASy Swiss-Prot
Match: METK3_SOLLC (S-adenosylmethionine synthetase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.690e-61
Identity = 116/146 (79.45%), Postives = 125/146 (85.62%), Query Frame = -3
Query:  308 GPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 745
            GPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KE+FDFRPGMM+INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILVLIKENFDFRPGMMSINLDLLRGGNYRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
BLAST of CN181954 vs. ExPASy Swiss-Prot
Match: METK2_SOLTU (S-adenosylmethionine synthetase 2 OS=Solanum tuberosum GN=METK2 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.690e-61
Identity = 116/146 (79.45%), Postives = 125/146 (85.62%), Query Frame = -3
Query:  308 GPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 745
            GPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KE+FDFRPGMM+INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILVLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
BLAST of CN181954 vs. ExPASy Swiss-Prot
Match: METK1_PETHY (S-adenosylmethionine synthetase 1 OS=Petunia hybrida GN=SAM1 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.312e-60
Identity = 118/152 (77.63%), Postives = 127/152 (83.55%), Query Frame = -3
Query:  290 GPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 745
            GPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KE+FDFRPGMM+INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK L    PQA
Sbjct:  242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVL---NPQA 390          
BLAST of CN181954 vs. ExPASy Swiss-Prot
Match: METK1_TOBAC (S-adenosylmethionine synthetase 1 OS=Nicotiana tabacum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.713e-60
Identity = 115/146 (78.77%), Postives = 125/146 (85.62%), Query Frame = -3
Query:  308 GPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 745
            GPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KE+FDFRPGMM+INLDL RGGN R+ KTAAYGHFGRDDPDF+WE VK LK
Sbjct:  242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFSWETVKVLK 387          
BLAST of CN181954 vs. ExPASy Swiss-Prot
Match: METK1_ACTCH (S-adenosylmethionine synthetase 1 OS=Actinidia chinensis GN=SAM1 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.713e-60
Identity = 115/146 (78.77%), Postives = 125/146 (85.62%), Query Frame = -3
Query:  308 GPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 745
            GPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA+GLARRC+VQVSYAIGV EPLSVFVD+Y TGKI DK+IL ++KE+FDFRPGM+ INLDLKRGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCLVQVSYAIGVAEPLSVFVDTYKTGKIADKDILALIKENFDFRPGMIAINLDLKRGGNLRYQKTAAYGHFGRDDPDFTWETVKILK 387          
BLAST of CN181954 vs. ExPASy Swiss-Prot
Match: METK2_PETHY (S-adenosylmethionine synthetase 2 OS=Petunia hybrida GN=SAM2 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.110e-59
Identity = 116/152 (76.32%), Postives = 126/152 (82.89%), Query Frame = -3
Query:  290 GPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 745
            GPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGV EPLSVFVD+Y TG IP K++L ++KE+FDFRPGMM+INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK L    PQA
Sbjct:  242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPGKDVLTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVL---NPQA 390          
BLAST of CN181954 vs. ExPASy Swiss-Prot
Match: METK3_CATRO (S-adenosylmethionine synthetase 3 OS=Catharanthus roseus GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.894e-59
Identity = 113/146 (77.40%), Postives = 124/146 (84.93%), Query Frame = -3
Query:  308 GPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 745
            GPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA+GLARRC+VQVSYAIGV EPLSVFVD++ TGKIPDK+IL ++KE+FDFRPGM+ INLDLKRGGN R+ KTAA GH GRDDPDFTWE VK LK
Sbjct:  242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCLVQVSYAIGVAEPLSVFVDTFKTGKIPDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAALGHLGRDDPDFTWETVKILK 387          
BLAST of CN181954 vs. ExPASy Swiss-Prot
Match: METK2_TOBAC (S-adenosylmethionine synthetase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.401e-59
Identity = 113/146 (77.40%), Postives = 122/146 (83.56%), Query Frame = -3
Query:  308 GPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 745
            GPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA GLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KE+FDFRPGM+ INLDL RGGN R+ KTAAYGHFGRD+ DFTWE VK LK
Sbjct:  242 GPHGDAGLTGRKIIIDTYGGWGAHGEGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILALIKENFDFRPGMIAINLDLLRGGNFRYQKTAAYGHFGRDEADFTWETVKALK 387          
BLAST of CN181954 vs. ExPASy Swiss-Prot
Match: METK_CHLRE (S-adenosylmethionine synthetase OS=Chlamydomonas reinhardtii GN=METM PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.315e-57
Identity = 107/146 (73.29%), Postives = 122/146 (83.56%), Query Frame = -3
Query:  308 GPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 745
            GPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYI RQAAKS+VA+GLA+RC+VQVSY+I V EPLSVFVD+YGTG +PD EILK++++ FDFRPG++  NLDLKRGGN R+ KTAAYGHFGRDDPDFTWE VK L+
Sbjct:  245 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSVVASGLAKRCLVQVSYSIAVAEPLSVFVDTYGTGTMPDAEILKLIRKHFDFRPGLIGKNLDLKRGGNKRYQKTAAYGHFGRDDPDFTWETVKKLE 390          
BLAST of CN181954 vs. ExPASy Swiss-Prot
Match: METK_OSTLU (S-adenosylmethionine synthetase OS=Ostreococcus lucimarinus (strain CCE9901) GN=METK-1 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.996e-52
Identity = 107/147 (72.79%), Postives = 114/147 (77.55%), Query Frame = -3
Query:  311 GPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDD--PDFTWEVVKPL 745
            GPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYI RQAAKS+VA GLARRC+ Q+SYAIGV EPLSV VD+YGTGKIPD EIL  VK +FDFRPGMM   LDLKRGGN R+  TAAYGHFGRD+    FTWE V PL
Sbjct:  241 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYISRQAAKSVVAAGLARRCLFQISYAIGVAEPLSVHVDTYGTGKIPDSEILAKVKAAFDFRPGMMGKALDLKRGGNKRYQTTAAYGHFGRDEDLDIFTWEKVVPL 387          
The following BLAST results are available for this feature:
BLAST of CN181954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK3_SOLLC7.690e-6179.45S-adenosylmethionine synthetase 3 OS=Solanum lycop... [more]
METK2_SOLTU7.690e-6179.45S-adenosylmethionine synthetase 2 OS=Solanum tuber... [more]
METK1_PETHY1.312e-6077.63S-adenosylmethionine synthetase 1 OS=Petunia hybri... [more]
METK1_TOBAC1.713e-6078.77S-adenosylmethionine synthetase 1 OS=Nicotiana tab... [more]
METK1_ACTCH1.713e-6078.77S-adenosylmethionine synthetase 1 OS=Actinidia chi... [more]
METK2_PETHY1.110e-5976.32S-adenosylmethionine synthetase 2 OS=Petunia hybri... [more]
METK3_CATRO1.894e-5977.40S-adenosylmethionine synthetase 3 OS=Catharanthus ... [more]
METK2_TOBAC9.401e-5977.40S-adenosylmethionine synthetase 2 OS=Nicotiana tab... [more]
METK_CHLRE2.315e-5773.29S-adenosylmethionine synthetase OS=Chlamydomonas r... [more]
METK_OSTLU4.996e-5272.79S-adenosylmethionine synthetase OS=Ostreococcus lu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L15_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181954 ID=CN181954; Name=CN181954; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTAGCAAAGGAAGAATTTACTAATTCCAGGCACCAGTTGAGCAAAA
TTCTCAATCGATATCACTACACAACAGTGGTGACATGGTACATTAAACCA
AAACCAAAAAAGAAGTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGG
AACATGTATGAGTTCTGAACACAGGAGATTTGCTTAGTATTACAAAGCAG
CAGCAAGATAATATTCAAATTATTCATCCACTACCAATAGAAGCAAACTT
GAACAGCAGGGATAGTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCT
TTTCCCACTTGAGGGGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCC
CTGCCAAAGTGTCCATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCC
CCTTTTGAGATCCAAATTGATGGTCATCATTCCTGGCCTGAAATCAAAGC
TTTCCTTCACAATTTTGAGGATCTCCTTGTCAGGAATCTTGCCGGTTCCA
TATGAGTCCACAAAAACAGACAATGGCTCAGGCACACCAATGGCATAGGA
GACTTGGACAATGCACCTGCGAGCAAGCCCGTTTGCAACAATGCTCTTAG
CAGCCTGCCTAACAATGTATGCACCACTCCTATCCACCTTAGTAGGGTCT
TTTCCAGAGAAAGCACCGCCACCATGGGCTCCCCAGCCACCATAAGTGTC
GATGATGATCTTACGTCCAGTGAGACCAGCATCACCATGAGGGCCCACCA
ATG
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