CN181951

Overview
NameCN181951
Unique NameCN181951
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:18..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181951 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 57/110 (51.82%), Postives = 74/110 (67.27%), Query Frame = 3
Query:  138 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNST-----LKRKCSS 452
            +KG W+ EED  L QLV+K+G R WS I++ +PGR GK CR RW N L P ++   ++ EED ++I  H   GNKWA IA+ L GRT+N+IKNHWN+T      KRKC S
Sbjct:  216 VKGQWTAEEDRVLIQLVEKYGLRKWSHIAQVLPGRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRS 325          
BLAST of CN181951 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  141 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 440
            KGPW+  ED  L   V+KHG  NW+ + K+    R GKSCRLRW N L P ++  AFT EE+ +II+ H++ GNKWA +A  L GRTDN IKN+WN+ +KR
Sbjct:   42 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CN181951 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  141 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 440
            KGPW+  ED  L   V+KHG  NW+ + K+    R GKSCRLRW N L P ++  AFT EE+ +II+ H++ GNKWA +A  L GRTDN IKN+WN+ +KR
Sbjct:   42 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CN181951 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25
Identity = 55/115 (47.83%), Postives = 75/115 (65.22%), Query Frame = 3
Query:  141 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLN 482
            KG WSPEED  L Q +  +G   WS ++K+    R GKSCRLRW N L P ++  AF+P+E+++IIR H+  GN+W+ IA  L GRTDN IKN WNST+K++   M   + +  N
Sbjct:   20 KGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKKMSDTSNLINN 134          
BLAST of CN181951 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24
Identity = 57/116 (49.14%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  141 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSG-----KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLT-ENG 470
            KGPW+PEED  L   +Q+HGP NW    ++IP  +G     KSCRLRW N L P ++   FT  E++MII   A  GN+WA IA  L  RTDN IKN+WN+ LK+K   + + ENG
Sbjct:   14 KGPWTPEEDIILVSYIQEHGPGNW----RAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQSPENG 125          
BLAST of CN181951 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.940e-24
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 3
Query:  141 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG--RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 443
            KG WSPEEDE L   + +HG   WS + K + G  R GKSCRLRW N L P ++  AF+ +E+ +II  HA  GN+W+ IA  L GRTDN IKN WNS LK+K
Sbjct:   14 KGLWSPEEDEKLLNYITRHGHGCWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKK 115          
BLAST of CN181951 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.840e-24
Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 3
Query:  141 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVT 578
            KGPW+PEED+ L   +Q+HG  NW  + K     R GKSCRLRW N L P ++   F+ EE++ II  H   GN+W+ IA  L GRTDN IKN W++ LK++  +            G+ A  G    ++P   K+  +A ++ P +
Sbjct:   14 KGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLDAPAQ--------GGHVAASGGKKHKKPKSAKKPAAAAAAPPAS 152          
BLAST of CN181951 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  141 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 452
            KG W+ EED+ L   ++KHG   W  + ++    R GKSCRLRW N L P ++   FT EEDE+II+ H+  GNKW+ IA  L GRTDN IKN+WN+ +KRK  S
Sbjct:   14 KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLS 118          
BLAST of CN181951 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 54/102 (52.94%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  141 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 443
            +G W+P+ED  L   +QKHG  NW  + K     R GKSCRLRW N L P ++   FT EE+E IIR H   GNKW+ IA  L GRTDN IKN WN+ LK+K
Sbjct:   16 RGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKK 117          
BLAST of CN181951 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.459e-23
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 3
Query:  141 KGPWSPEEDEALQQLVQKHGPRNWSLISK-SIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 443
            KGPW+ +ED  L   V+  G R W  ++K S   R+GKSCRLRW N L P ++H   +P+E+ +II  HAR+GN+W+ IAR L GRTDN IKN+W + +++K
Sbjct:   10 KGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKK 111          
The following BLAST results are available for this feature:
BLAST of CN181951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB98_ARATH9.766e-2851.82Transcription factor MYB98 OS=Arabidopsis thaliana... [more]
GAM1_ORYSJ2.036e-2552.48Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI2.036e-2552.48Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
MYB46_ARATH2.659e-2547.83Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
MYB06_ANTMA1.724e-2449.14Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
MYB86_ARATH2.940e-2453.40Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYB4_ORYSJ3.840e-2438.78Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB3_ARATH5.016e-2450.48Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB1_MAIZE5.016e-2452.94Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
MYBA1_ORYSJ1.459e-2349.02Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181951 ID=CN181951; Name=CN181951; organism=Citrus sinensis; type=EST; length=697bp
CCGGGCTGCAGGGAAAAAAGACCACCTCTCTCGAAGCTAAAAACTGAAAT
TCTCTTGCATGATCAACACCCATTCATTGAAGTTAAATTATTTTTAATTG
TTCATTAATGGCGTTTAATAGAAGAGAAGTGGATCGGATCAAAGGTCCAT
GGAGCCCCGAAGAAGACGAAGCCTTACAGCAGCTGGTTCAAAAACACGGC
CCAAGAAATTGGTCTCTAATCAGCAAATCAATTCCCGGAAGATCGGGAAA
GTCTTGCCGGCTACGGTGGTGCAACCAGCTGTCACCTCAAGTCGAGCACC
GAGCGTTCACGCCCGAAGAAGACGAGATGATCATACGAGCCCACGCTCGG
TTTGGCAACAAGTGGGCCACCATCGCGCGCCTTCTCAACGGCCGAACCGA
TAACGCGATTAAGAATCACTGGAACTCGACCTTAAAACGTAAGTGCTCTT
CGATGTTGACAGAGAACGGTATTTTTTTGAATTGTAATGGATACGATGCG
GATTTTGGGAATAGTATTCAGCAACAGCCGTTGAAATTGAAAAGATCGGT
GAGTGCGGGATCGAGTGTGCCCGTGACCACGGGACTTTATATGAGCCCCG
GTAGTCCATCGGGATCCGACGTCAGCGATTCAAGCGTGCCGGGTTTGTCA
TCGAATTACAATATATACAAACCCGTGGCGAGATCTGGCGGTATCAA
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