CN188808

Overview
NameCN188808
Unique NameCN188808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.911e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.257e-33
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.560e-33
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.484e-33
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.484e-33
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 9.484e-33
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.484e-33
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.484e-33
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.239e-32
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.618e-32
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
The following BLAST results are available for this feature:
BLAST of CN188808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_ARATH1.911e-33100.00Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBIQ_COPCO4.257e-3398.61Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_CHLRE5.560e-3398.61Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_YEAST9.484e-3397.22Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_SCHPO9.484e-3397.22Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA9.484e-3397.22Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE9.484e-3397.22Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL9.484e-3397.22Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBL1_ORYSJ1.239e-3297.22Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_NEUCR1.618e-3297.22Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188808 ID=CN188808; Name=CN188808; organism=Citrus sinensis; type=EST; length=674bp
AGTAATAAGTATTATTATGTCATTAATAGTATGAAATATGAAAAGAACAA
ATAAATAATTCAATACATTAATCTCCAATCACCCTCGAAAATAATATCCT
AGTAATAGTTTTCTTCCGTTACCAAACGACTTAGTGCTTCAGGAGAGCGA
GAAGAGAAACAAACAGCGAAGATGCAATAACAGCACCGGAAACCGGCAGA
GAAGAGGCTGCTCCGGTGTCCAATGAAGGAGATGGTGCGGGGGCCATCTC
GGTGCTTTGAGCTGAAGCAGCAGCCATTGCAAAAGCTGCCAAAACGAACA
CCATCACGACTGACTTTAAGCTGCTAATTTGCCCCATCTGTGTTAATATT
AATTGCTGAAGAAAAACAAGAAGCAAGAACTATATGTGAAATCACTTGGC
CGATTACAATATCCAGAAGGAATCAACTCTTCACCTCGTGCTTCGTCTCC
GTGGGGGCATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATTACC
CTCGAAGTCGAGAGCTCCGACACGATCGACAACGTCAAGGCCAAGATCCA
GGACAAGGAAGGGATTCCGCCGGACCAGCAGCGTTTGATCTTCGCTGGCA
AGCAGCTGGAGGATGGAAGGACGCTCGCGGATTACAACATTCAGAAGGAA
TCAACTCTTCATCTGGTTTTGCGT
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