CN188808

Overview
NameCN188808
Unique NameCN188808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
[Close]
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 3 
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
The following BLAST results are available for this feature:
BLAST of CN188808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_ICTPU4.707e-3295.83Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]
UBIQ_HUMAN4.707e-3295.83Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]
UBIQ_HORSE4.707e-3295.83Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]
UBIQ_GORGO4.707e-3295.83Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]
UBIQ_FELCA4.707e-3295.83Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1[more]
UBIQ_DROME4.707e-3295.83Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]
UBIQ_CRIGR4.707e-3295.83Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_CHICK4.707e-3295.83Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA4.707e-3295.83Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO4.707e-3295.83Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188808 ID=CN188808; Name=CN188808; organism=Citrus sinensis; type=EST; length=674bp
AGTAATAAGTATTATTATGTCATTAATAGTATGAAATATGAAAAGAACAA
ATAAATAATTCAATACATTAATCTCCAATCACCCTCGAAAATAATATCCT
AGTAATAGTTTTCTTCCGTTACCAAACGACTTAGTGCTTCAGGAGAGCGA
GAAGAGAAACAAACAGCGAAGATGCAATAACAGCACCGGAAACCGGCAGA
GAAGAGGCTGCTCCGGTGTCCAATGAAGGAGATGGTGCGGGGGCCATCTC
GGTGCTTTGAGCTGAAGCAGCAGCCATTGCAAAAGCTGCCAAAACGAACA
CCATCACGACTGACTTTAAGCTGCTAATTTGCCCCATCTGTGTTAATATT
AATTGCTGAAGAAAAACAAGAAGCAAGAACTATATGTGAAATCACTTGGC
CGATTACAATATCCAGAAGGAATCAACTCTTCACCTCGTGCTTCGTCTCC
GTGGGGGCATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATTACC
CTCGAAGTCGAGAGCTCCGACACGATCGACAACGTCAAGGCCAAGATCCA
GGACAAGGAAGGGATTCCGCCGGACCAGCAGCGTTTGATCTTCGCTGGCA
AGCAGCTGGAGGATGGAAGGACGCTCGCGGATTACAACATTCAGAAGGAA
TCAACTCTTCATCTGGTTTTGCGT
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