CN188808

Overview
NameCN188808
Unique NameCN188808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.204e-31
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 3
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLR 72          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.674e-29
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 3
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLR
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLR 72          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 8.598e-26
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 3
Query:  492 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 61          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.598e-26
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 3
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLR
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLR 72          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.573e-25
Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 3
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 674
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLR
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLR 72          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.869e-18
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 3
Query:  465 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 671
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVL 71          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.052e-18
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 3
Query:  465 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 671
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVL 71          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.052e-18
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 3
Query:  465 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 671
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVL 71          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.052e-18
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 3
Query:  465 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 671
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVL 71          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 3
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 671
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVL 71          
The following BLAST results are available for this feature:
BLAST of CN188808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_LEIMA5.204e-3193.06Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA1.674e-2990.28Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE8.598e-2695.08Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVOP8.598e-2679.17Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC5.573e-2575.00Ubiquitin-like protein OS=Autographa californica n... [more]
RUB1_DESAN3.869e-1863.77NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ5.052e-1862.32NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ5.052e-1862.32NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH5.052e-1862.32NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
NEDD8_DROME6.599e-1857.75NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188808 ID=CN188808; Name=CN188808; organism=Citrus sinensis; type=EST; length=674bp
AGTAATAAGTATTATTATGTCATTAATAGTATGAAATATGAAAAGAACAA
ATAAATAATTCAATACATTAATCTCCAATCACCCTCGAAAATAATATCCT
AGTAATAGTTTTCTTCCGTTACCAAACGACTTAGTGCTTCAGGAGAGCGA
GAAGAGAAACAAACAGCGAAGATGCAATAACAGCACCGGAAACCGGCAGA
GAAGAGGCTGCTCCGGTGTCCAATGAAGGAGATGGTGCGGGGGCCATCTC
GGTGCTTTGAGCTGAAGCAGCAGCCATTGCAAAAGCTGCCAAAACGAACA
CCATCACGACTGACTTTAAGCTGCTAATTTGCCCCATCTGTGTTAATATT
AATTGCTGAAGAAAAACAAGAAGCAAGAACTATATGTGAAATCACTTGGC
CGATTACAATATCCAGAAGGAATCAACTCTTCACCTCGTGCTTCGTCTCC
GTGGGGGCATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATTACC
CTCGAAGTCGAGAGCTCCGACACGATCGACAACGTCAAGGCCAAGATCCA
GGACAAGGAAGGGATTCCGCCGGACCAGCAGCGTTTGATCTTCGCTGGCA
AGCAGCTGGAGGATGGAAGGACGCTCGCGGATTACAACATTCAGAAGGAA
TCAACTCTTCATCTGGTTTTGCGT
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